Wall clock time and date at job start Mon Mar 30 2020 04:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 N 1.29438 * 119.60045 * 0.02562 * 5 4 2 7 7 N 1.40225 * 120.31368 * 180.02562 * 6 5 4 8 8 C 1.36837 * 120.48784 * 196.40086 * 7 6 5 9 9 H 1.08005 * 119.99655 * 180.02562 * 8 7 6 10 10 C 1.38818 * 120.00364 * 359.97438 * 8 7 6 11 11 N 1.31468 * 119.99986 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99968 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47176 * 60.00270 * 12 10 8 14 14 H 1.48500 * 109.47094 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46961 * 300.00063 * 12 10 8 16 16 C 1.35245 * 119.01743 * 16.37117 * 7 6 5 17 17 O 1.21300 * 120.77857 * 180.28630 * 16 7 6 18 18 C 1.51095 * 118.44552 * 0.31139 * 16 7 6 19 19 H 1.09002 * 109.61502 * 90.47843 * 18 16 7 20 20 C 1.52998 * 109.61708 * 211.00893 * 18 16 7 21 21 O 1.35118 * 119.59809 * 179.72215 * 5 4 2 22 22 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 24 24 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 25 25 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 26 26 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 28 28 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 29 29 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 30 30 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 31 31 H 0.97004 * 119.99646 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.46924 * 59.99608 * 20 18 16 33 33 H 1.09000 * 109.47440 * 180.02562 * 20 18 16 34 34 H 1.09005 * 109.46608 * 300.00221 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1734 1.1887 6 7 0.9694 -2.6102 0.1723 7 7 0.5902 -3.9583 0.1010 8 6 0.1856 -4.5037 -1.0870 9 1 -0.1051 -5.5429 -1.1328 10 6 0.1479 -3.7213 -2.2330 11 7 0.5014 -2.4562 -2.1772 12 14 -0.4051 -4.4659 -3.8546 13 1 -1.7950 -4.9707 -3.7190 14 1 -0.3557 -3.4299 -4.9174 15 1 0.4964 -5.5890 -4.2165 16 6 0.6308 -4.7115 1.2235 17 8 0.3147 -5.8823 1.1972 18 6 1.0786 -4.0603 2.5113 19 1 0.2140 -3.6527 3.0352 20 6 1.7776 -5.0958 3.3945 21 8 1.9950 -3.0049 2.1933 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9562 0.8901 29 1 1.6055 -0.2619 2.1369 30 1 3.1264 -0.6444 1.2950 31 1 0.4753 -1.9096 -2.9781 32 1 2.6456 -5.4945 2.8695 33 1 2.0992 -4.6237 4.3229 34 1 1.0854 -5.9070 3.6205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:44 Heat of formation + Delta-G solvation = -38.855490 kcal Electronic energy + Delta-G solvation = -18262.566302 eV Core-core repulsion = 15389.827048 eV Total energy + Delta-G solvation = -2872.739253 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.87755 -39.14153 -37.52803 -36.71563 -34.20647 -33.00087 -31.59828 -28.76175 -27.69406 -27.19689 -24.87551 -23.31063 -21.04349 -20.57616 -19.67312 -18.56244 -17.38337 -16.93991 -16.46753 -15.86319 -15.59559 -15.35239 -15.31239 -14.55084 -13.99651 -13.76817 -13.63797 -13.45093 -13.04558 -13.03373 -12.87627 -12.77422 -12.59452 -12.39584 -12.17467 -12.04885 -11.77458 -11.52588 -11.29437 -11.18213 -10.74078 -10.16107 -9.36970 -8.16975 -5.97387 0.78904 1.37841 1.40418 1.48338 1.81746 1.99938 2.26578 2.54840 3.07477 3.19428 3.81447 3.87660 4.14648 4.22959 4.30436 4.59601 4.72678 4.79743 4.87185 4.89585 4.97827 5.04466 5.07428 5.17681 5.25233 5.35523 5.46122 5.55956 5.61602 5.81208 5.97881 6.13350 6.62170 7.00834 7.52805 7.92717 8.74167 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.015888 B = 0.013462 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.886528 B = 2079.482766 C = 3658.572566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.023 4.023 5 C 0.195 3.805 6 N -0.213 5.213 7 N -0.294 5.294 8 C -0.371 4.371 9 H 0.088 0.912 10 C 0.014 3.986 11 N -0.810 5.810 12 Si 0.989 3.011 13 H -0.272 1.272 14 H -0.263 1.263 15 H -0.275 1.275 16 C 0.356 3.644 17 O -0.606 6.606 18 C 0.089 3.911 19 H 0.099 0.901 20 C -0.117 4.117 21 O -0.354 6.354 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.268 0.732 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 8.899 6.411 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.062 4.062 5 C -0.031 4.031 6 N -0.040 5.040 7 N -0.099 5.099 8 C -0.497 4.497 9 H 0.106 0.894 10 C -0.196 4.196 11 N -0.442 5.442 12 Si 0.812 3.188 13 H -0.198 1.198 14 H -0.187 1.187 15 H -0.200 1.200 16 C 0.146 3.854 17 O -0.491 6.491 18 C 0.029 3.971 19 H 0.117 0.883 20 C -0.174 4.174 21 O -0.261 6.261 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.091 8.663 5.640 10.790 hybrid contribution -0.391 -1.219 -0.452 1.357 sum 2.701 7.444 5.188 9.467 Atomic orbital electron populations 1.21745 0.95898 1.01720 0.99668 1.20800 0.95931 0.96086 0.96854 1.21770 1.01176 0.94018 1.02265 1.20551 1.02908 0.81686 1.01035 1.26846 0.96366 0.95412 0.84482 1.76296 1.14667 0.95405 1.17591 1.44947 1.52027 1.04705 1.08267 1.19521 1.48704 0.96762 0.84731 0.89392 1.26087 0.95993 0.95879 1.01620 1.70307 1.39418 1.05274 1.29153 0.85103 0.78663 0.78104 0.76942 1.19769 1.18735 1.20017 1.22159 0.86662 0.88359 0.88243 1.90468 1.55408 1.17161 1.86064 1.22712 0.93724 0.87853 0.92789 0.88299 1.21596 1.00606 0.96336 0.98840 1.85973 1.46967 1.40346 1.52855 0.93349 0.93100 0.94279 0.92045 0.91795 0.92818 0.91257 0.87058 0.87520 0.92169 0.92948 0.87373 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.91 71.98 0.64 -3.99 16 2 C -0.08 -2.45 2.54 -10.79 -0.03 -2.48 16 3 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 4 C -0.02 -0.68 5.28 29.85 0.16 -0.52 16 5 C 0.20 8.09 7.30 88.46 0.65 8.73 16 6 N -0.21 -10.72 5.31 -165.46 -0.88 -11.60 16 7 N -0.29 -16.86 3.61 -306.27 -1.11 -17.97 16 8 C -0.37 -22.29 9.68 84.05 0.81 -21.48 16 9 H 0.09 5.54 7.23 -2.91 -0.02 5.52 16 10 C 0.01 0.75 5.49 84.89 0.47 1.22 16 11 N -0.81 -42.91 11.16 21.64 0.24 -42.67 16 12 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C 0.36 19.17 7.39 87.71 0.65 19.82 16 17 O -0.61 -35.74 16.01 -3.09 -0.05 -35.79 16 18 C 0.09 3.62 3.79 29.97 0.11 3.74 16 19 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 20 C -0.12 -3.77 9.21 71.98 0.66 -3.11 16 21 O -0.35 -14.16 10.08 -83.94 -0.85 -15.01 16 22 H 0.05 2.14 5.73 -2.39 -0.01 2.12 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 2.42 7.73 -2.39 -0.02 2.40 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.27 13.23 8.31 -92.70 -0.77 12.46 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.76 7.90 -2.38 -0.02 2.74 16 Total: -1.00 -70.95 284.15 5.26 -65.69 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.08 Total: 12.72 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.78 Total: -0.44 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.74 Total: -72.24 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.90 Total: -50.80 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.95 5.26 -65.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.834 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds