Wall clock time and date at job start Mon Mar 30 2020 04:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46847 * 2 1 4 4 C 1.53001 * 109.47164 * 119.99918 * 2 1 3 5 5 C 1.50695 * 109.47164 * 65.00409 * 4 2 1 6 6 N 1.29441 * 119.60063 * 359.97438 * 5 4 2 7 7 N 1.40225 * 120.31575 * 180.09829 * 6 5 4 8 8 C 1.36832 * 120.48989 * 196.35530 * 7 6 5 9 9 H 1.08006 * 120.00074 * 180.02562 * 8 7 6 10 10 C 1.38826 * 120.00508 * 359.97438 * 8 7 6 11 11 N 1.31462 * 119.99869 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00390 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47116 * 89.99948 * 12 10 8 14 14 H 1.48493 * 109.47054 * 210.00328 * 12 10 8 15 15 H 1.48505 * 109.47036 * 330.00101 * 12 10 8 16 16 C 1.35243 * 119.01668 * 16.37762 * 7 6 5 17 17 O 1.21300 * 120.78156 * 180.28790 * 16 7 6 18 18 C 1.51095 * 118.44571 * 0.30817 * 16 7 6 19 19 H 1.08999 * 109.61707 * 210.83253 * 18 16 7 20 20 C 1.52996 * 109.61972 * 90.47926 * 18 16 7 21 21 O 1.35118 * 119.60401 * 179.97438 * 5 4 2 22 22 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47001 * 299.99821 * 1 2 3 24 24 H 1.08999 * 109.47464 * 59.99935 * 1 2 3 25 25 H 1.09001 * 109.47001 * 240.00179 * 2 1 3 26 26 H 1.09003 * 109.47056 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47142 * 300.00262 * 3 2 1 28 28 H 1.09001 * 109.47174 * 60.00285 * 3 2 1 29 29 H 1.08998 * 109.47038 * 304.99858 * 4 2 1 30 30 H 1.09001 * 109.46742 * 185.00289 * 4 2 1 31 31 H 0.96995 * 120.00515 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.47161 * 59.99718 * 20 18 16 33 33 H 1.08996 * 109.47799 * 180.02562 * 20 18 16 34 34 H 1.08999 * 109.47054 * 300.00520 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6415 -2.1733 1.1889 6 7 0.9688 -2.6099 0.1729 7 7 0.5883 -3.9577 0.1023 8 6 0.1820 -4.5032 -1.0850 9 1 -0.1097 -5.5421 -1.1303 10 6 0.1436 -3.7210 -2.2313 11 7 0.4982 -2.4563 -2.1762 12 14 -0.4118 -4.4654 -3.8520 13 1 -1.8814 -4.3045 -3.9928 14 1 0.2717 -3.7739 -4.9743 15 1 -0.0673 -5.9097 -3.8772 16 6 0.6285 -4.7104 1.2252 17 8 0.3114 -5.8809 1.1996 18 6 1.0773 -4.0590 2.5125 19 1 1.5720 -4.7976 3.1433 20 6 -0.1355 -3.4854 3.2480 21 8 1.9906 -3.0037 2.1959 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6054 -0.2617 2.1369 30 1 3.1264 -0.6442 1.2951 31 1 0.4710 -1.9096 -2.9769 32 1 -0.8368 -4.2887 3.4740 33 1 0.1909 -3.0157 4.1759 34 1 -0.6247 -2.7427 2.6178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:48 Heat of formation + Delta-G solvation = -39.796520 kcal Electronic energy + Delta-G solvation = -18406.677966 eV Core-core repulsion = 15533.897907 eV Total energy + Delta-G solvation = -2872.780059 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.95595 -39.13421 -37.48528 -36.67691 -34.16597 -33.02157 -31.59902 -28.79833 -27.68589 -27.07563 -25.14297 -23.46951 -20.95647 -20.58433 -19.50480 -18.17043 -17.30243 -17.01234 -16.61225 -15.99034 -15.66104 -15.49037 -15.25519 -14.47172 -14.08082 -13.82610 -13.55188 -13.36062 -13.20219 -13.04051 -12.96650 -12.76071 -12.66324 -12.39703 -12.17995 -12.00998 -11.78667 -11.51552 -11.28448 -11.16831 -10.72182 -10.13519 -9.35821 -8.16964 -5.97369 0.81473 1.38064 1.39531 1.49946 1.83853 2.00827 2.29346 2.56848 3.07566 3.20181 3.84245 3.87257 4.16145 4.20984 4.31054 4.51730 4.61517 4.80697 4.85884 4.90009 4.95947 4.99271 5.04967 5.18689 5.25763 5.36223 5.46983 5.56864 5.62704 5.81953 5.98714 6.13829 6.63317 7.01084 7.53427 7.94394 8.74039 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.013025 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.540714 B = 2149.205511 C = 3468.673420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.024 4.024 5 C 0.199 3.801 6 N -0.212 5.212 7 N -0.289 5.289 8 C -0.370 4.370 9 H 0.087 0.913 10 C 0.015 3.985 11 N -0.809 5.809 12 Si 0.989 3.011 13 H -0.269 1.269 14 H -0.265 1.265 15 H -0.277 1.277 16 C 0.357 3.643 17 O -0.616 6.616 18 C 0.091 3.909 19 H 0.153 0.847 20 C -0.159 4.159 21 O -0.353 6.353 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 9.884 6.323 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.193 4.193 4 C -0.063 4.063 5 C -0.028 4.028 6 N -0.038 5.038 7 N -0.094 5.094 8 C -0.497 4.497 9 H 0.105 0.895 10 C -0.195 4.195 11 N -0.440 5.440 12 Si 0.811 3.189 13 H -0.195 1.195 14 H -0.189 1.189 15 H -0.202 1.202 16 C 0.147 3.853 17 O -0.502 6.502 18 C 0.031 3.969 19 H 0.170 0.830 20 C -0.217 4.217 21 O -0.260 6.260 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.183 9.656 5.543 11.346 hybrid contribution -0.326 -1.346 -0.411 1.445 sum 1.857 8.310 5.133 9.942 Atomic orbital electron populations 1.21742 0.95868 1.01755 0.99631 1.20798 0.95947 0.96053 0.96866 1.21773 1.01162 0.94069 1.02251 1.20556 1.02888 0.81857 1.01023 1.26764 0.96263 0.95364 0.84366 1.76305 1.14565 0.95232 1.17746 1.44897 1.51687 1.04745 1.08103 1.19546 1.48619 0.96735 0.84792 0.89541 1.26072 0.95980 0.95882 1.01563 1.70304 1.39313 1.05270 1.29124 0.85043 0.78621 0.78115 0.77084 1.19478 1.18925 1.20199 1.22108 0.86761 0.88105 0.88293 1.90480 1.56089 1.17544 1.86108 1.22869 0.92773 0.88441 0.92848 0.83018 1.22229 0.96076 1.01741 1.01605 1.85953 1.46832 1.40548 1.52677 0.93268 0.93110 0.94345 0.92063 0.91826 0.92846 0.91258 0.87051 0.87589 0.92168 0.90269 0.86815 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.91 71.98 0.64 -3.93 16 2 C -0.08 -2.42 2.54 -10.79 -0.03 -2.45 16 3 C -0.14 -3.01 9.19 71.98 0.66 -2.35 16 4 C -0.02 -0.71 5.28 29.85 0.16 -0.55 16 5 C 0.20 8.09 6.75 88.46 0.60 8.69 16 6 N -0.21 -10.53 5.31 -165.46 -0.88 -11.41 16 7 N -0.29 -16.47 3.61 -306.27 -1.11 -17.58 16 8 C -0.37 -22.23 9.68 84.05 0.81 -21.42 16 9 H 0.09 5.47 7.23 -2.91 -0.02 5.45 16 10 C 0.01 0.80 5.49 84.89 0.47 1.27 16 11 N -0.81 -42.58 11.16 21.64 0.24 -42.34 16 12 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 16 C 0.36 19.19 6.98 87.71 0.61 19.80 16 17 O -0.62 -36.94 16.83 -3.09 -0.05 -36.99 16 18 C 0.09 3.61 3.92 29.97 0.12 3.73 16 19 H 0.15 5.27 8.14 -2.39 -0.02 5.25 16 20 C -0.16 -5.11 9.34 71.98 0.67 -4.44 16 21 O -0.35 -13.90 10.15 -83.94 -0.85 -14.75 16 22 H 0.05 2.15 5.72 -2.39 -0.01 2.13 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 2.40 7.74 -2.39 -0.02 2.38 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.04 1.55 7.82 -2.39 -0.02 1.54 16 Total: -1.00 -71.33 284.25 5.18 -66.15 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.08 Total: 13.57 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.71 Total: -1.65 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.74 Total: -71.33 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.90 Total: -51.74 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.33 5.18 -66.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.357 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds