Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30252 * 125.61680 * 2 1 4 4 C 1.34476 * 108.70091 * 179.73436 * 3 2 1 5 5 C 1.50706 * 126.16429 * 180.27092 * 4 3 2 6 6 C 1.34330 * 107.66692 * 0.39724 * 4 3 2 7 7 C 1.50698 * 126.43898 * 179.87504 * 6 4 3 8 8 H 1.09003 * 109.47642 * 14.71687 * 7 6 4 9 9 O 1.42904 * 109.46756 * 134.70909 * 7 6 4 10 10 C 1.52997 * 109.47191 * 254.70873 * 7 6 4 11 11 N 1.46501 * 109.47217 * 180.02562 * 10 7 6 12 12 C 1.46494 * 120.00025 * 89.99940 * 11 10 7 13 13 C 1.36939 * 120.00056 * 270.00184 * 11 10 7 14 14 H 1.08004 * 119.99865 * 334.63375 * 13 11 10 15 15 C 1.38815 * 120.00201 * 154.63183 * 13 11 10 16 16 N 1.31622 * 119.99508 * 3.98550 * 15 13 11 17 17 Si 1.86797 * 120.00036 * 183.98264 * 15 13 11 18 18 H 1.48502 * 109.46887 * 85.00282 * 17 15 13 19 19 H 1.48494 * 109.47106 * 205.00158 * 17 15 13 20 20 H 1.48498 * 109.47139 * 325.00161 * 17 15 13 21 21 O 1.33961 * 125.62101 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47079 * 270.01966 * 1 2 3 23 23 H 1.09001 * 109.47249 * 30.02771 * 1 2 3 24 24 H 1.09003 * 109.46522 * 150.02413 * 1 2 3 25 25 H 1.08998 * 109.47158 * 270.14561 * 5 4 3 26 26 H 1.09004 * 109.47143 * 30.14974 * 5 4 3 27 27 H 1.09005 * 109.46597 * 150.14622 * 5 4 3 28 28 H 0.96704 * 113.99598 * 60.00337 * 9 7 6 29 29 H 1.09002 * 109.46913 * 60.00385 * 10 7 6 30 30 H 1.09003 * 109.47061 * 300.00265 * 10 7 6 31 31 H 1.09001 * 109.47389 * 264.47268 * 12 11 10 32 32 H 1.08998 * 109.47514 * 24.48020 * 12 11 10 33 33 H 1.09001 * 109.47054 * 144.47588 * 12 11 10 34 34 H 0.97000 * 119.99193 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 0.0059 5 6 4.7570 1.5729 0.0138 6 6 3.5698 -0.6756 0.0007 7 6 4.7938 -1.5547 0.0017 8 1 5.6678 -0.9604 0.2682 9 8 4.6242 -2.6061 0.9545 10 6 4.9911 -2.1558 -1.3914 11 7 6.1807 -3.0109 -1.3902 12 6 6.0599 -4.4334 -1.0617 13 6 7.4055 -2.4804 -1.6962 14 1 7.4723 -1.5969 -2.3138 15 6 8.5613 -3.0783 -1.2127 16 7 8.4848 -4.1986 -0.5261 17 14 10.2249 -2.2928 -1.5365 18 1 10.4955 -1.2624 -0.5020 19 1 11.2821 -3.3343 -1.4863 20 1 10.2194 -1.6574 -2.8787 21 8 2.2873 -1.0890 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8897 -0.5143 24 1 -0.3632 -0.8903 -0.5135 25 1 5.0512 1.7951 -1.0120 26 1 4.5110 2.5007 0.5304 27 1 5.5802 1.0775 0.5287 28 1 3.8633 -3.1766 0.7794 29 1 5.1205 -1.3537 -2.1181 30 1 4.1171 -2.7501 -1.6578 31 1 6.2812 -4.5823 -0.0049 32 1 5.0445 -4.7698 -1.2713 33 1 6.7642 -5.0066 -1.6647 34 1 9.2925 -4.6166 -0.1886 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259682790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -7.913041 kcal Electronic energy + Delta-G solvation = -17610.169252 eV Core-core repulsion = 14738.771764 eV Total energy + Delta-G solvation = -2871.397488 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.12455 -37.30235 -34.96583 -34.77102 -32.73852 -31.30611 -29.50973 -28.58232 -26.02177 -25.62259 -22.95093 -21.54046 -20.81204 -20.25472 -17.25415 -16.62030 -16.52866 -15.61411 -14.98476 -14.68933 -14.34890 -13.80812 -13.44406 -13.25320 -13.00325 -12.87768 -12.70644 -12.53109 -12.09456 -11.76906 -11.22371 -11.10786 -10.87846 -10.69937 -10.65129 -10.43042 -10.29963 -10.07033 -9.99443 -9.66372 -8.53078 -8.30488 -6.74861 -5.76543 -3.23358 1.64918 2.81710 2.85155 3.37005 3.42889 3.43843 4.11805 4.45734 4.86039 4.95793 5.05691 5.25049 5.27341 5.36031 5.45901 5.60671 5.68866 5.81044 5.87283 5.97385 5.98228 6.12108 6.24023 6.48948 6.56737 6.65741 6.80375 7.50003 7.76158 7.89714 7.92386 8.12308 8.38215 9.21743 9.81588 10.31745 11.27454 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035708 B = 0.006448 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.945297 B = 4341.481342 C = 4842.498406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.169 3.831 3 N -0.481 5.481 4 C -0.021 4.021 5 C -0.071 4.071 6 C -0.058 4.058 7 C 0.169 3.831 8 H 0.127 0.873 9 O -0.536 6.536 10 C 0.129 3.871 11 N -0.590 5.590 12 C 0.168 3.832 13 C -0.266 4.266 14 H 0.070 0.930 15 C 0.011 3.989 16 N -0.901 5.901 17 Si 0.904 3.096 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.280 1.280 21 O -0.200 6.200 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.366 0.634 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.034 0.966 32 H -0.012 1.012 33 H 0.051 0.949 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 6.352 0.746 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 N -0.212 5.212 4 C -0.141 4.141 5 C -0.128 4.128 6 C -0.112 4.112 7 C 0.105 3.895 8 H 0.145 0.855 9 O -0.339 6.339 10 C -0.001 4.001 11 N -0.311 5.311 12 C 0.024 3.976 13 C -0.395 4.395 14 H 0.087 0.913 15 C -0.188 4.188 16 N -0.545 5.545 17 Si 0.733 3.267 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.205 1.205 21 O -0.087 6.087 22 H 0.106 0.894 23 H 0.115 0.885 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.212 0.788 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.239 7.017 1.047 14.146 hybrid contribution 0.652 -0.391 -0.262 0.804 sum -11.587 6.625 0.785 13.370 Atomic orbital electron populations 1.20157 0.81739 1.04723 1.04260 1.26115 0.96289 0.79099 1.02239 1.70255 1.01825 1.30453 1.18712 1.21479 0.93139 0.92296 1.07167 1.20127 0.92034 0.97681 1.02948 1.25008 0.84033 0.96286 1.05893 1.21914 0.87614 0.85677 0.94284 0.85514 1.86679 1.52252 1.43501 1.51482 1.21538 0.91025 0.94677 0.92826 1.43865 1.02935 1.04459 1.79884 1.20916 0.93663 0.82934 1.00072 1.19210 0.82992 1.11584 1.25714 0.91257 1.25198 0.98403 0.97465 0.97765 1.70098 1.27280 1.17831 1.39261 0.86294 0.83757 0.78669 0.77968 1.21160 1.21605 1.20515 1.84350 1.16686 1.37575 1.70084 0.89355 0.88514 0.89592 0.90698 0.91044 0.90363 0.78822 0.92628 0.93872 0.94783 0.99343 0.93017 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.45 10.51 36.01 0.38 -0.08 16 2 C 0.17 2.49 8.34 -12.95 -0.11 2.38 16 3 N -0.48 -8.05 11.29 -7.36 -0.08 -8.13 16 4 C -0.02 -0.36 7.11 -82.81 -0.59 -0.95 16 5 C -0.07 -1.02 10.17 36.01 0.37 -0.65 16 6 C -0.06 -1.02 6.24 -35.69 -0.22 -1.24 16 7 C 0.17 3.26 3.63 -27.89 -0.10 3.15 16 8 H 0.13 2.61 6.84 -51.93 -0.35 2.26 16 9 O -0.54 -10.80 12.67 -35.27 -0.45 -11.24 16 10 C 0.13 2.64 5.38 -4.04 -0.02 2.62 16 11 N -0.59 -14.74 2.85 -181.12 -0.52 -15.26 16 12 C 0.17 4.18 8.43 59.84 0.50 4.69 16 13 C -0.27 -7.19 9.67 -15.06 -0.15 -7.33 16 14 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 15 C 0.01 0.30 5.38 -17.43 -0.09 0.20 16 16 N -0.90 -26.06 10.13 55.49 0.56 -25.50 16 17 Si 0.90 21.52 29.56 -169.99 -5.02 16.49 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 O -0.20 -3.30 10.77 5.34 0.06 -3.24 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.11 7.03 -51.93 -0.36 0.74 16 28 H 0.37 6.15 9.04 45.56 0.41 6.56 16 29 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 30 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 31 H 0.03 0.92 7.44 -51.93 -0.39 0.53 16 32 H -0.01 -0.26 7.83 -51.93 -0.41 -0.67 16 33 H 0.05 1.39 7.04 -51.93 -0.37 1.03 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -32.10 291.40 -5.04 -37.14 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.95 Total: 2.55 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.03 Total: 2.79 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.04 Total: -48.89 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.39 Total: -14.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.10 -5.04 -37.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259682790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.230 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds