Wall clock time and date at job start Mon Mar 30 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46919 * 2 1 4 4 O 1.42897 * 109.46882 * 120.00084 * 2 1 3 5 5 C 1.53002 * 109.46988 * 240.00032 * 2 1 3 6 6 H 1.08991 * 109.47084 * 65.00081 * 5 2 1 7 7 C 1.53001 * 109.46573 * 185.00073 * 5 2 1 8 8 C 1.50709 * 109.46761 * 184.99986 * 7 5 2 9 9 C 1.41370 * 126.80275 * 124.99981 * 8 7 5 10 10 C 1.35448 * 103.98751 * 180.02562 * 9 8 7 11 11 O 1.34039 * 106.44378 * 359.97438 * 10 9 8 12 12 N 1.20922 * 111.57273 * 359.71415 * 11 10 9 13 13 N 1.46503 * 109.46968 * 304.99719 * 5 2 1 14 14 C 1.46496 * 120.00261 * 300.00192 * 13 5 2 15 15 C 1.36939 * 119.99549 * 120.00391 * 13 5 2 16 16 H 1.08001 * 120.00237 * 22.80216 * 15 13 5 17 17 C 1.38812 * 119.99841 * 202.80878 * 15 13 5 18 18 N 1.31618 * 120.00179 * 12.39665 * 17 15 13 19 19 Si 1.86801 * 119.99861 * 192.40022 * 17 15 13 20 20 H 1.48509 * 109.47215 * 90.00005 * 19 17 15 21 21 H 1.48495 * 109.47263 * 209.99619 * 19 17 15 22 22 H 1.48493 * 109.47399 * 329.99854 * 19 17 15 23 23 H 1.08995 * 109.47034 * 299.99783 * 1 2 3 24 24 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47007 * 60.00098 * 1 2 3 26 26 H 0.96703 * 113.99962 * 299.99973 * 4 2 1 27 27 H 1.08994 * 109.47410 * 304.99473 * 7 5 2 28 28 H 1.08995 * 109.47259 * 65.00577 * 7 5 2 29 29 H 1.08004 * 128.00618 * 359.96122 * 9 8 7 30 30 H 1.07999 * 126.77676 * 179.97438 * 10 9 8 31 31 H 1.09000 * 109.47366 * 94.94122 * 14 13 5 32 32 H 1.09007 * 109.47072 * 214.93681 * 14 13 5 33 33 H 1.08999 * 109.47155 * 334.93869 * 14 13 5 34 34 H 0.97002 * 119.99698 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0401 -0.7213 -1.2493 6 1 1.7517 -0.1584 -2.1369 7 6 3.5649 -0.8310 -1.1879 8 6 4.0774 -1.4303 -2.4722 9 6 5.0495 -0.8764 -3.3365 10 6 5.1563 -1.7858 -4.3346 11 8 4.3009 -2.7748 -4.0400 12 7 3.7170 -2.5632 -3.0025 13 7 1.4559 -2.0634 -1.3109 14 6 1.6987 -3.0184 -0.2269 15 6 0.6830 -2.4251 -2.3819 16 1 0.7894 -1.9077 -3.3239 17 6 -0.2374 -3.4566 -2.2566 18 7 -0.5453 -3.9228 -1.0649 19 14 -1.0390 -4.1831 -3.7795 20 1 -0.2152 -5.3122 -4.2817 21 1 -2.3973 -4.6756 -3.4368 22 1 -1.1415 -3.1394 -4.8307 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -0.2701 1.9979 27 1 3.9955 0.1611 -1.0527 28 1 3.8499 -1.4681 -0.3507 29 1 5.5827 0.0564 -3.2268 30 1 5.8030 -1.7258 -5.1975 31 1 0.8759 -2.9751 0.4866 32 1 1.7697 -4.0252 -0.6388 33 1 2.6311 -2.7658 0.2779 34 1 -1.1888 -4.6434 -0.9775 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:02 Heat of formation + Delta-G solvation = 41.021268 kcal Electronic energy + Delta-G solvation = -18389.899224 eV Core-core repulsion = 15520.623687 eV Total energy + Delta-G solvation = -2869.275537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.26449 -37.85190 -35.00782 -33.76323 -31.73030 -30.92399 -29.52488 -28.59932 -25.68658 -24.22096 -22.57289 -21.99360 -20.48930 -18.84329 -17.19050 -17.04493 -16.80809 -16.07284 -14.75819 -14.59397 -14.04915 -13.83803 -13.40710 -12.89937 -12.79591 -12.28848 -11.85774 -11.80009 -11.36710 -11.03979 -10.76220 -10.72554 -10.60865 -10.37457 -10.13658 -9.96679 -9.71182 -9.68318 -9.40988 -9.15012 -8.88691 -8.31191 -6.50626 -5.49830 -2.93615 2.10252 2.93535 3.50319 3.56450 3.57311 3.85075 4.65555 4.89548 4.99350 5.03837 5.49540 5.60877 5.63862 5.74039 5.80498 5.89446 5.93728 6.16620 6.18736 6.37880 6.45281 6.51876 6.62623 6.74706 6.97540 7.26914 7.37103 7.73242 7.99533 8.13005 8.32504 8.60985 9.06322 9.46627 10.09326 10.60063 11.53725 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.012983 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.704517 B = 2156.146618 C = 3401.819846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.032 0.968 4 O -0.554 6.554 5 C 0.188 3.812 6 H 0.069 0.931 7 C -0.056 4.056 8 C 0.018 3.982 9 C -0.241 4.241 10 C -0.089 4.089 11 O 0.097 5.903 12 N -0.303 5.303 13 N -0.574 5.574 14 C 0.183 3.817 15 C -0.226 4.226 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.908 5.908 19 Si 0.897 3.103 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.284 1.284 23 H 0.032 0.968 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.358 0.642 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.204 0.796 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.002 0.998 34 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 8.670 -0.921 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 H 0.049 0.951 4 O -0.357 6.357 5 C 0.078 3.922 6 H 0.087 0.913 7 C -0.096 4.096 8 C -0.141 4.141 9 C -0.263 4.263 10 C -0.170 4.170 11 O 0.026 5.974 12 N -0.002 5.002 13 N -0.294 5.294 14 C 0.038 3.962 15 C -0.356 4.356 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.554 5.554 19 Si 0.728 3.272 20 H -0.217 1.217 21 H -0.222 1.222 22 H -0.210 1.210 23 H 0.051 0.949 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.203 0.797 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.178 0.822 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.021 0.979 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.728 7.152 -0.978 11.326 hybrid contribution -0.206 0.822 -0.604 1.040 sum 8.522 7.974 -1.581 11.777 Atomic orbital electron populations 1.22324 0.96090 1.05130 0.99391 1.22515 0.93869 0.93299 0.87406 0.95065 1.86674 1.76445 1.57443 1.15181 1.20363 0.89656 0.88597 0.93599 0.91311 1.20547 0.98825 0.98948 0.91285 1.23613 0.97302 0.92832 1.00363 1.22676 1.03747 1.03099 0.96741 1.25856 0.98314 0.90688 1.02180 1.84991 1.40385 1.40311 1.31675 1.74293 1.12906 1.17839 0.95197 1.43675 1.56440 1.06813 1.22480 1.20588 0.94791 0.91372 0.89407 1.18993 1.12045 1.15585 0.89026 0.92575 1.24863 0.97888 1.01012 0.95873 1.70081 1.35737 1.29469 1.20129 0.86367 0.78334 0.79421 0.83073 1.21706 1.22156 1.20959 0.94895 0.88635 0.93001 0.79669 0.91448 0.89562 0.82191 0.77965 0.95432 0.95208 0.97948 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.32 37.16 0.35 -2.96 16 2 C 0.09 1.63 3.37 -26.73 -0.09 1.54 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 4 O -0.55 -9.86 10.22 -35.23 -0.36 -10.22 16 5 C 0.19 3.91 2.11 -67.93 -0.14 3.76 16 6 H 0.07 1.46 7.86 -51.93 -0.41 1.06 16 7 C -0.06 -1.03 4.96 -27.88 -0.14 -1.17 16 8 C 0.02 0.35 6.55 -82.10 -0.54 -0.19 16 9 C -0.24 -3.53 11.12 -39.39 -0.44 -3.97 16 10 C -0.09 -1.22 12.30 29.74 0.37 -0.85 16 11 O 0.10 1.80 11.20 17.18 0.19 1.99 16 12 N -0.30 -6.58 10.72 33.42 0.36 -6.22 16 13 N -0.57 -14.36 1.02 -173.48 -0.18 -14.53 16 14 C 0.18 4.78 7.24 59.84 0.43 5.22 16 15 C -0.23 -6.32 8.98 -15.06 -0.14 -6.45 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 18 N -0.91 -27.16 10.67 55.49 0.59 -26.56 16 19 Si 0.90 23.09 29.57 -169.99 -5.03 18.06 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 2.32 7.26 -51.93 -0.38 1.94 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.36 4.80 9.08 45.56 0.41 5.21 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.73 6.08 -51.93 -0.32 1.41 16 29 H 0.16 1.80 8.06 -52.48 -0.42 1.37 16 30 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 32 H 0.03 0.86 7.30 -51.93 -0.38 0.48 16 33 H 0.00 0.05 5.51 -51.93 -0.29 -0.23 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 280.88 15.07 4.23 4.23 Total: -1.00 -32.71 280.88 -4.42 -37.13 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.81 Total: 1.26 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.43 Total: -5.13 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.77 Total: -47.32 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.17 Total: -8.23 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.71 -4.42 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.149 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds