Wall clock time and date at job start Mon Mar 30 2020 04:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47466 * 2 1 4 4 O 1.42893 * 109.47511 * 120.00818 * 2 1 3 5 5 C 1.53007 * 109.46825 * 240.00384 * 2 1 3 6 6 H 1.08998 * 109.47404 * 65.31755 * 5 2 1 7 7 C 1.53001 * 109.46820 * 185.31814 * 5 2 1 8 8 C 1.50700 * 109.46951 * 184.99791 * 7 5 2 9 9 C 1.34337 * 126.44152 * 89.71080 * 8 7 5 10 10 N 1.34478 * 107.66669 * 179.87968 * 9 8 7 11 11 C 1.30256 * 108.70270 * 0.39158 * 10 9 8 12 12 O 1.33961 * 108.76039 * 359.76116 * 11 10 9 13 13 N 1.46494 * 109.47169 * 305.31880 * 5 2 1 14 14 C 1.46497 * 120.00421 * 114.55935 * 13 5 2 15 15 C 1.36942 * 119.99946 * 294.55997 * 13 5 2 16 16 H 1.07997 * 119.99815 * 350.97215 * 15 13 5 17 17 C 1.38814 * 119.99601 * 170.69970 * 15 13 5 18 18 N 1.31613 * 120.00746 * 7.92768 * 17 15 13 19 19 Si 1.86807 * 119.99581 * 187.92574 * 17 15 13 20 20 H 1.48502 * 109.47256 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47043 * 120.00246 * 19 17 15 22 22 H 1.48506 * 109.46828 * 240.00057 * 19 17 15 23 23 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47213 * 299.99443 * 1 2 3 25 25 H 1.09000 * 109.47741 * 59.99626 * 1 2 3 26 26 H 0.96699 * 114.00578 * 51.94770 * 4 2 1 27 27 H 1.08990 * 109.47452 * 304.99809 * 7 5 2 28 28 H 1.08996 * 109.47329 * 65.00653 * 7 5 2 29 29 H 1.07994 * 126.16681 * 0.02562 * 9 8 7 30 30 H 1.08000 * 125.61753 * 179.73902 * 11 10 9 31 31 H 1.08998 * 109.47399 * 245.23600 * 14 13 5 32 32 H 1.09003 * 109.47113 * 5.23379 * 14 13 5 33 33 H 1.08995 * 109.47517 * 125.23207 * 14 13 5 34 34 H 0.97000 * 120.00537 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.0399 -0.7212 -1.2494 6 1 1.7564 -0.1553 -2.1368 7 6 3.5641 -0.8380 -1.1843 8 6 4.0772 -1.4372 -2.4684 9 6 4.4377 -0.7652 -3.5743 10 7 4.8381 -1.6674 -4.4877 11 6 4.7241 -2.8595 -3.9751 12 8 4.2550 -2.7480 -2.7253 13 7 1.4498 -2.0604 -1.3152 14 6 0.5286 -2.4025 -2.4016 15 6 1.7594 -2.9927 -0.3610 16 1 2.5447 -2.7941 0.3532 17 6 1.0598 -4.1905 -0.3084 18 7 0.2096 -4.4988 -1.2646 19 14 1.3254 -5.3651 1.1197 20 1 2.3257 -4.7899 2.0544 21 1 0.0409 -5.5729 1.8351 22 1 1.8212 -6.6667 0.6044 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6242 -1.5524 1.2971 27 1 3.9988 0.1518 -1.0461 28 1 3.8440 -1.4780 -0.3476 29 1 4.4129 0.3064 -3.7054 30 1 4.9673 -3.7851 -4.4755 31 1 -0.4631 -2.5922 -1.9910 32 1 0.4767 -1.5742 -3.1084 33 1 0.8865 -3.2954 -2.9141 34 1 -0.2795 -5.3356 -1.2276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259697305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:17 Heat of formation + Delta-G solvation = 3.288297 kcal Electronic energy + Delta-G solvation = -18464.010662 eV Core-core repulsion = 15593.098901 eV Total energy + Delta-G solvation = -2870.911761 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.67775 -38.07369 -34.59394 -34.05689 -32.75792 -30.74359 -29.61471 -27.59270 -25.91880 -23.99138 -22.14920 -21.97866 -20.75530 -19.72912 -17.15149 -16.75755 -16.02702 -15.45579 -15.03850 -14.63111 -14.23399 -13.92047 -13.37264 -13.26541 -13.01087 -12.45642 -11.97862 -11.72069 -11.41679 -11.22078 -11.10536 -10.81910 -10.77998 -10.70021 -10.63869 -10.10963 -10.04092 -9.91425 -9.70453 -9.08680 -8.59437 -8.18879 -6.93349 -5.72937 -3.14320 2.11733 3.21445 3.33757 3.42018 3.42830 3.44475 4.41705 4.73819 5.10393 5.23318 5.33125 5.51957 5.60325 5.71380 5.82924 5.88925 5.97956 6.09861 6.21706 6.41311 6.44051 6.50760 6.62875 6.73466 6.83442 6.89956 7.03096 7.59731 7.67771 7.88494 8.24953 8.30655 8.56206 9.19333 9.82972 10.27626 11.26461 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.011422 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.700062 B = 2450.889417 C = 3164.977162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 H 0.076 0.924 4 O -0.578 6.578 5 C 0.152 3.848 6 H 0.062 0.938 7 C -0.051 4.051 8 C 0.014 3.986 9 C -0.081 4.081 10 N -0.495 5.495 11 C 0.145 3.855 12 O -0.175 6.175 13 N -0.599 5.599 14 C 0.173 3.827 15 C -0.252 4.252 16 H 0.084 0.916 17 C 0.003 3.997 18 N -0.908 5.908 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.292 1.292 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.389 0.611 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.238 0.762 31 H 0.039 0.961 32 H -0.014 1.014 33 H 0.042 0.958 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 6.426 -0.963 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.037 3.963 3 H 0.094 0.906 4 O -0.390 6.390 5 C 0.042 3.958 6 H 0.080 0.920 7 C -0.090 4.090 8 C -0.041 4.041 9 C -0.219 4.219 10 N -0.225 5.225 11 C -0.081 4.081 12 O -0.059 6.059 13 N -0.322 5.322 14 C 0.029 3.971 15 C -0.381 4.381 16 H 0.102 0.898 17 C -0.194 4.194 18 N -0.555 5.555 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.219 1.219 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.244 0.756 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.190 0.810 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.004 0.996 33 H 0.061 0.939 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.387 6.843 -1.504 8.267 hybrid contribution -0.498 -1.489 1.018 1.871 sum 3.889 5.354 -0.486 6.635 Atomic orbital electron populations 1.22334 0.96784 1.03851 1.00125 1.22281 0.93130 0.94532 0.86328 0.90590 1.86311 1.71220 1.36655 1.44851 1.21064 0.89870 0.88304 0.96535 0.92006 1.20669 0.98206 0.99104 0.91031 1.23538 1.00723 0.80365 0.99432 1.22837 1.08309 1.00300 0.90485 1.70301 1.19956 0.99791 1.32409 1.27764 0.99973 0.98809 0.81569 1.84590 1.61979 1.27823 1.31518 1.44002 1.52166 1.07024 1.29030 1.21039 0.93861 0.94567 0.87598 1.19292 1.14573 0.96458 1.07750 0.89847 1.24890 0.98396 0.98068 0.98048 1.70236 1.30002 1.23623 1.31661 0.86246 0.77357 0.81199 0.82226 1.20194 1.21712 1.21894 0.90182 0.93688 0.93166 0.75639 0.89960 0.88861 0.80989 0.74608 0.94239 0.99560 0.93914 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.25 37.15 0.34 -2.61 16 2 C 0.10 1.70 3.48 -26.73 -0.09 1.61 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 O -0.58 -11.04 11.93 -35.23 -0.42 -11.46 16 5 C 0.15 2.82 2.18 -67.93 -0.15 2.67 16 6 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 7 C -0.05 -0.88 4.81 -27.88 -0.13 -1.02 16 8 C 0.01 0.26 6.37 -35.69 -0.23 0.04 16 9 C -0.08 -1.40 11.80 -17.77 -0.21 -1.61 16 10 N -0.50 -8.93 11.29 -14.97 -0.17 -9.09 16 11 C 0.15 2.47 13.23 52.09 0.69 3.16 16 12 O -0.18 -3.53 10.77 5.37 0.06 -3.47 16 13 N -0.60 -13.38 1.59 -173.49 -0.28 -13.66 16 14 C 0.17 4.14 9.01 59.85 0.54 4.68 16 15 C -0.25 -6.13 7.14 -15.06 -0.11 -6.24 16 16 H 0.08 2.01 5.24 -52.49 -0.28 1.73 16 17 C 0.00 0.09 5.45 -17.43 -0.10 -0.01 16 18 N -0.91 -24.90 9.49 55.49 0.53 -24.37 16 19 Si 0.90 20.81 29.56 -169.99 -5.02 15.79 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H 0.08 1.62 7.47 -51.93 -0.39 1.23 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.39 7.88 5.95 45.56 0.27 8.15 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.81 6.25 -51.93 -0.32 1.49 16 29 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.24 2.90 8.06 -52.49 -0.42 2.48 16 31 H 0.04 1.01 7.05 -51.93 -0.37 0.65 16 32 H -0.01 -0.31 7.56 -51.93 -0.39 -0.70 16 33 H 0.04 1.14 7.07 -51.93 -0.37 0.78 16 34 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 279.82 15.07 4.22 4.22 Total: -1.00 -28.69 279.82 -4.44 -33.13 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.91 Total: 8.26 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.56 Total: 0.66 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.08 Total: -47.12 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.36 Total: -14.93 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.69 -4.44 -33.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.414 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds