Wall clock time and date at job start Mon Mar 30 2020 04:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47466 * 2 1 4 4 O 1.42893 * 109.47511 * 120.00818 * 2 1 3 5 5 C 1.53007 * 109.46825 * 240.00384 * 2 1 3 6 6 H 1.08998 * 109.47404 * 65.31755 * 5 2 1 7 7 C 1.53001 * 109.46820 * 185.31814 * 5 2 1 8 8 C 1.50700 * 109.46951 * 184.99791 * 7 5 2 9 9 C 1.34337 * 126.44152 * 89.71080 * 8 7 5 10 10 N 1.34478 * 107.66669 * 179.87968 * 9 8 7 11 11 C 1.30256 * 108.70270 * 0.39158 * 10 9 8 12 12 O 1.33961 * 108.76039 * 359.76116 * 11 10 9 13 13 N 1.46494 * 109.47169 * 305.31880 * 5 2 1 14 14 C 1.46497 * 120.00421 * 114.55935 * 13 5 2 15 15 C 1.36942 * 119.99946 * 294.55997 * 13 5 2 16 16 H 1.07997 * 119.99815 * 350.97215 * 15 13 5 17 17 C 1.38814 * 119.99601 * 170.69970 * 15 13 5 18 18 N 1.31613 * 120.00746 * 7.92768 * 17 15 13 19 19 Si 1.86807 * 119.99581 * 187.92574 * 17 15 13 20 20 H 1.48502 * 109.47256 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47043 * 120.00246 * 19 17 15 22 22 H 1.48506 * 109.46828 * 240.00057 * 19 17 15 23 23 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47213 * 299.99443 * 1 2 3 25 25 H 1.09000 * 109.47741 * 59.99626 * 1 2 3 26 26 H 0.96699 * 114.00578 * 51.94770 * 4 2 1 27 27 H 1.08990 * 109.47452 * 304.99809 * 7 5 2 28 28 H 1.08996 * 109.47329 * 65.00653 * 7 5 2 29 29 H 1.07994 * 126.16681 * 0.02562 * 9 8 7 30 30 H 1.08000 * 125.61753 * 179.73902 * 11 10 9 31 31 H 1.08998 * 109.47399 * 245.23600 * 14 13 5 32 32 H 1.09003 * 109.47113 * 5.23379 * 14 13 5 33 33 H 1.08995 * 109.47517 * 125.23207 * 14 13 5 34 34 H 0.97000 * 120.00537 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.0399 -0.7212 -1.2494 6 1 1.7564 -0.1553 -2.1368 7 6 3.5641 -0.8380 -1.1843 8 6 4.0772 -1.4372 -2.4684 9 6 4.4377 -0.7652 -3.5743 10 7 4.8381 -1.6674 -4.4877 11 6 4.7241 -2.8595 -3.9751 12 8 4.2550 -2.7480 -2.7253 13 7 1.4498 -2.0604 -1.3152 14 6 0.5286 -2.4025 -2.4016 15 6 1.7594 -2.9927 -0.3610 16 1 2.5447 -2.7941 0.3532 17 6 1.0598 -4.1905 -0.3084 18 7 0.2096 -4.4988 -1.2646 19 14 1.3254 -5.3651 1.1197 20 1 2.3257 -4.7899 2.0544 21 1 0.0409 -5.5729 1.8351 22 1 1.8212 -6.6667 0.6044 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6242 -1.5524 1.2971 27 1 3.9988 0.1518 -1.0461 28 1 3.8440 -1.4780 -0.3476 29 1 4.4129 0.3064 -3.7054 30 1 4.9673 -3.7851 -4.4755 31 1 -0.4631 -2.5922 -1.9910 32 1 0.4767 -1.5742 -3.1084 33 1 0.8865 -3.2954 -2.9141 34 1 -0.2795 -5.3356 -1.2276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259697305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:17 Heat of formation + Delta-G solvation = -17.672579 kcal Electronic energy + Delta-G solvation = -18464.919594 eV Core-core repulsion = 15593.098901 eV Total energy + Delta-G solvation = -2871.820693 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.05483 -39.62607 -36.26546 -35.45498 -34.38388 -32.34523 -31.20830 -29.04462 -27.84088 -25.49027 -23.80920 -23.38392 -22.14302 -21.31251 -18.84591 -18.21659 -17.47565 -17.11153 -16.53721 -16.27802 -15.74429 -15.38279 -15.01236 -14.77747 -14.55532 -13.91703 -13.67496 -13.28298 -13.09010 -12.79587 -12.73180 -12.55771 -12.41288 -12.26824 -12.16729 -11.90138 -11.74755 -11.42015 -11.25108 -10.65442 -10.55099 -9.57953 -8.77942 -7.69452 -5.09028 0.75161 1.47291 1.51840 1.58236 1.88223 2.16232 2.53898 3.37447 3.53904 3.60939 3.76400 4.06939 4.28066 4.30229 4.41659 4.53568 4.58250 4.71383 4.81924 4.85035 5.03538 5.10997 5.12125 5.26290 5.48254 5.55951 5.56172 5.63484 5.71943 5.90678 6.36399 6.90313 7.00457 7.24010 7.97223 8.37717 9.29843 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.011422 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.700062 B = 2450.889417 C = 3164.977162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 H 0.113 0.887 4 O -0.583 6.583 5 C 0.147 3.853 6 H 0.074 0.926 7 C -0.042 4.042 8 C -0.013 4.013 9 C -0.073 4.073 10 N -0.514 5.514 11 C 0.148 3.852 12 O -0.208 6.208 13 N -0.604 5.604 14 C 0.194 3.806 15 C -0.227 4.227 16 H 0.089 0.911 17 C -0.053 4.053 18 N -0.941 5.941 19 Si 0.952 3.048 20 H -0.263 1.263 21 H -0.298 1.298 22 H -0.306 1.306 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.382 0.618 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.202 0.798 30 H 0.273 0.727 31 H 0.014 0.986 32 H 0.007 0.993 33 H 0.006 0.994 34 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 8.420 -0.789 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.131 0.869 4 O -0.394 6.394 5 C 0.039 3.961 6 H 0.092 0.908 7 C -0.081 4.081 8 C -0.067 4.067 9 C -0.211 4.211 10 N -0.244 5.244 11 C -0.078 4.078 12 O -0.093 6.093 13 N -0.327 5.327 14 C 0.049 3.951 15 C -0.357 4.357 16 H 0.106 0.894 17 C -0.247 4.247 18 N -0.591 5.591 19 Si 0.782 3.218 20 H -0.188 1.188 21 H -0.225 1.225 22 H -0.234 1.234 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.234 0.766 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.219 0.781 30 H 0.288 0.712 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.502 8.897 -1.312 10.543 hybrid contribution -0.764 -2.006 0.894 2.326 sum 4.739 6.890 -0.418 8.373 Atomic orbital electron populations 1.22242 0.96753 1.01779 1.01593 1.22416 0.93158 0.95723 0.84903 0.86933 1.86316 1.71337 1.36129 1.45616 1.21336 0.90500 0.86349 0.97865 0.90781 1.20617 0.97102 1.00519 0.89849 1.23810 1.02343 0.80108 1.00399 1.23311 1.06624 1.01541 0.89620 1.70348 1.20826 1.00351 1.32857 1.28686 0.98405 1.00046 0.80661 1.84577 1.62780 1.29009 1.32944 1.44090 1.51972 1.08491 1.28151 1.20619 0.92761 0.93750 0.87920 1.19487 1.13081 0.96131 1.06992 0.89379 1.25468 0.99351 0.99918 0.99957 1.70410 1.31735 1.23656 1.33322 0.85403 0.76941 0.79097 0.80327 1.18763 1.22506 1.23367 0.93938 0.92216 0.91751 0.76551 0.86260 0.91111 0.78076 0.71153 0.96722 0.97479 0.97536 0.95097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.29 9.25 71.98 0.67 -4.63 16 2 C 0.10 3.08 3.48 30.59 0.11 3.19 16 3 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 4 O -0.58 -20.91 11.93 -148.98 -1.78 -22.68 16 5 C 0.15 5.09 2.18 45.00 0.10 5.19 16 6 H 0.07 2.40 7.56 -2.39 -0.02 2.39 16 7 C -0.04 -1.35 4.81 29.85 0.14 -1.20 16 8 C -0.01 -0.45 6.37 24.79 0.16 -0.29 16 9 C -0.07 -2.33 11.80 83.40 0.98 -1.35 16 10 N -0.51 -17.47 11.29 -316.07 -3.57 -21.04 16 11 C 0.15 4.80 13.23 130.48 1.73 6.53 16 12 O -0.21 -8.18 10.77 -3.70 -0.04 -8.22 16 13 N -0.60 -26.61 1.59 -702.79 -1.12 -27.73 16 14 C 0.19 9.35 9.01 127.77 1.15 10.51 16 15 C -0.23 -11.03 7.14 84.03 0.60 -10.43 16 16 H 0.09 4.18 5.24 -2.91 -0.02 4.16 16 17 C -0.05 -2.81 5.45 84.86 0.46 -2.34 16 18 N -0.94 -53.30 9.49 21.65 0.21 -53.10 16 19 Si 0.95 43.59 29.56 68.60 2.03 45.62 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 22 H -0.31 -14.56 7.11 99.48 0.71 -13.86 16 23 H 0.04 1.68 7.47 -2.38 -0.02 1.66 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.38 15.01 5.95 -74.06 -0.44 14.57 16 27 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.07 2.62 6.25 -2.39 -0.01 2.61 16 29 H 0.20 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.27 6.14 8.06 -2.91 -0.02 6.11 16 31 H 0.01 0.76 7.05 -2.39 -0.02 0.75 16 32 H 0.01 0.29 7.56 -2.39 -0.02 0.27 16 33 H 0.01 0.34 7.07 -2.39 -0.02 0.32 16 34 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -62.39 279.82 2.49 -59.90 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.67 Total: 22.09 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.10 Total: 5.16 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -4.48 Total: -101.87 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.82 Total: -30.90 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.39 2.49 -59.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.224 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds