Wall clock time and date at job start Mon Mar 30 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.40065 * 125.98934 * 0.03245 * 5 2 1 7 7 C 1.31118 * 108.31939 * 179.97438 * 6 5 2 8 8 O 1.35981 * 125.91753 * 179.97438 * 7 6 5 9 9 C 1.40225 * 108.17119 * 359.97438 * 7 6 5 10 10 C 1.50699 * 126.10794 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.46937 * 89.97355 * 10 9 7 12 12 H 1.07994 * 119.99946 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99638 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00122 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99795 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47017 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47099 * 120.00076 * 15 13 11 18 18 H 1.48504 * 109.47037 * 240.00419 * 15 13 11 19 19 C 1.35154 * 125.99555 * 179.71596 * 5 2 1 20 20 O 1.35754 * 126.14375 * 0.02562 * 19 5 2 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 0.96697 * 114.00058 * 90.02325 * 8 7 6 31 31 H 1.08998 * 109.47617 * 209.97880 * 10 9 7 32 32 H 1.09001 * 109.46655 * 329.97588 * 10 9 7 33 33 H 0.96999 * 119.99888 * 180.02562 * 14 13 11 34 34 H 0.96696 * 114.00312 * 90.00584 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2242 -1.2670 -2.1956 7 6 2.0159 -1.7894 -3.1009 8 8 1.6197 -2.4397 -4.2275 9 6 3.3420 -1.5613 -2.7062 10 6 4.5776 -1.9918 -3.4538 11 6 4.9886 -0.9047 -4.4132 12 1 4.4129 0.0069 -4.4750 13 6 6.0996 -1.0740 -5.2119 14 7 6.8004 -2.1844 -5.1369 15 14 6.6095 0.2737 -6.4006 16 1 5.6629 1.4129 -6.2929 17 1 7.9803 0.7365 -6.0658 18 1 6.5910 -0.2565 -7.7876 19 6 3.3140 -0.8781 -1.5317 20 8 4.3934 -0.4614 -0.8217 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 1.5052 -1.8627 -4.9950 31 1 5.3853 -2.1758 -2.7454 32 1 4.3662 -2.9057 -4.0091 33 1 7.5822 -2.3034 -5.6986 34 1 4.7103 -1.1051 -0.1734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:19 Heat of formation + Delta-G solvation = -11.355990 kcal Electronic energy + Delta-G solvation = -17805.027892 eV Core-core repulsion = 14933.481106 eV Total energy + Delta-G solvation = -2871.546785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99252 -37.44565 -36.59601 -35.51955 -33.15608 -30.42813 -29.04743 -27.50700 -27.40547 -26.28351 -22.97766 -21.72971 -20.11125 -19.33857 -17.59629 -16.87330 -16.14571 -15.83876 -14.99077 -14.51823 -14.37261 -14.20831 -13.92189 -12.82119 -12.66835 -12.51951 -12.33272 -12.23584 -11.97912 -11.79386 -11.66737 -11.32331 -11.18278 -11.07303 -10.87060 -10.64977 -10.49840 -9.72865 -9.37228 -9.19108 -8.48587 -8.31884 -7.45151 -5.93687 -3.96042 2.20067 2.60708 3.26742 3.34108 3.41815 3.47284 4.21962 4.52000 4.63669 4.76625 4.81208 4.95879 5.39855 5.40444 5.43976 5.60695 5.68493 5.71072 5.74300 5.94941 5.99063 6.16574 6.21197 6.37745 6.53628 7.08940 7.17860 7.66345 7.80772 8.02367 8.10683 8.23111 8.27700 8.47136 9.07999 9.66466 11.15921 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.007140 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.249922 B = 3920.577885 C = 4229.266252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.185 3.815 3 C -0.160 4.160 4 C -0.160 4.160 5 N -0.368 5.368 6 N -0.304 5.304 7 C 0.260 3.740 8 O -0.459 6.459 9 C -0.200 4.200 10 C 0.091 3.909 11 C -0.501 4.501 12 H 0.052 0.948 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.245 3.755 20 O -0.454 6.454 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.396 0.604 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 4.170 11.659 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.102 3.898 3 C -0.218 4.218 4 C -0.219 4.219 5 N -0.167 5.167 6 N -0.141 5.141 7 C 0.056 3.944 8 O -0.262 6.262 9 C -0.212 4.212 10 C 0.054 3.946 11 C -0.540 4.540 12 H 0.070 0.930 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.210 1.210 19 C 0.079 3.921 20 O -0.255 6.255 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.252 0.748 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.622 4.316 11.983 16.585 hybrid contribution 1.296 0.610 -0.946 1.717 sum -9.326 4.926 11.037 15.266 Atomic orbital electron populations 1.21859 0.92085 1.03348 1.02408 1.20566 0.95838 0.91732 0.81639 1.22254 1.03158 0.93855 1.02572 1.22256 1.02109 1.01140 0.96372 1.48806 1.03162 1.45791 1.18972 1.77204 1.17500 1.18105 1.01272 1.19485 0.89771 0.95558 0.89618 1.84783 1.89585 1.34286 1.17526 1.20955 0.97625 1.05171 0.97466 1.17586 0.86968 0.96542 0.93547 1.21122 1.10600 1.02048 1.20208 0.92968 1.24981 0.96472 0.95600 0.97306 1.69964 1.18109 1.25337 1.40194 0.86548 0.78432 0.82183 0.80915 1.19890 1.21060 1.21028 1.18220 0.79674 1.00594 0.93570 1.84936 1.41336 1.44524 1.54738 0.91407 0.91490 0.91467 0.90996 0.90635 0.91885 0.91793 0.91761 0.90542 0.74813 0.95844 0.95088 0.93077 0.76168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.98 37.16 0.30 -1.32 16 2 C 0.19 2.44 1.16 -131.82 -0.15 2.28 16 3 C -0.16 -1.96 8.50 37.15 0.32 -1.64 16 4 C -0.16 -1.70 8.51 37.16 0.32 -1.38 16 5 N -0.37 -6.52 3.47 -48.78 -0.17 -6.69 16 6 N -0.30 -6.01 11.64 30.55 0.36 -5.66 16 7 C 0.26 5.61 8.41 -17.11 -0.14 5.47 16 8 O -0.46 -9.15 13.65 -19.68 -0.27 -9.41 16 9 C -0.20 -4.61 5.32 -104.71 -0.56 -5.17 16 10 C 0.09 2.45 5.43 -29.03 -0.16 2.29 16 11 C -0.50 -14.41 9.09 -34.44 -0.31 -14.73 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 C 0.25 4.89 7.22 -16.93 -0.12 4.76 16 20 O -0.45 -8.01 11.55 -18.97 -0.22 -8.23 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.02 6.93 -51.93 -0.36 0.66 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.40 6.19 9.06 45.56 0.41 6.60 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.38 4.89 8.47 45.56 0.39 5.27 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -34.21 291.92 -4.05 -38.26 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.25 Total: 4.51 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.62 Total: -7.89 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.92 Total: -38.59 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.49 Total: -17.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.21 -4.05 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.907 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds