Wall clock time and date at job start Mon Mar 30 2020 03:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46853 * 2 1 4 4 C 1.53005 * 109.46886 * 119.99429 * 2 1 3 5 5 H 1.08996 * 109.04550 * 281.93901 * 4 2 1 6 6 C 1.51872 * 109.10317 * 162.85930 * 4 2 1 7 7 N 1.44712 * 112.91985 * 304.96129 * 6 4 2 8 8 C 1.37103 * 114.08591 * 167.04380 * 7 6 4 9 9 H 1.07997 * 119.99991 * 50.48875 * 8 7 6 10 10 C 1.38946 * 120.00248 * 230.48171 * 8 7 6 11 11 N 1.31420 * 119.99667 * 19.68611 * 10 8 7 12 12 Si 1.86798 * 120.00259 * 199.68455 * 10 8 7 13 13 H 1.48501 * 109.47260 * 270.00133 * 12 10 8 14 14 H 1.48496 * 109.47213 * 30.00269 * 12 10 8 15 15 H 1.48504 * 109.47099 * 150.00266 * 12 10 8 16 16 C 1.31327 * 131.82950 * 347.34464 * 7 6 4 17 17 O 1.21290 * 116.49386 * 182.50272 * 16 7 6 18 18 C 1.49186 * 127.03587 * 2.20625 * 16 7 6 19 19 C 1.50690 * 111.11201 * 314.16498 * 18 16 7 20 20 O 1.21279 * 120.29326 * 244.16011 * 19 18 16 21 21 N 1.32527 * 119.41964 * 64.12767 * 19 18 16 22 22 H 1.09002 * 109.47380 * 60.00634 * 1 2 3 23 23 H 1.09005 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47646 * 300.00417 * 1 2 3 25 25 H 1.08997 * 109.47172 * 239.99493 * 2 1 3 26 26 H 1.09002 * 109.47144 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.47187 * 299.99479 * 3 2 1 28 28 H 1.08997 * 109.47645 * 59.99783 * 3 2 1 29 29 H 1.09000 * 108.79419 * 184.07181 * 6 4 2 30 30 H 1.09001 * 108.79214 * 65.84727 * 6 4 2 31 31 H 0.96997 * 120.00447 * 5.49006 * 11 10 8 32 32 H 1.09001 * 109.20725 * 193.66874 * 18 16 7 33 33 H 1.08995 * 108.96546 * 74.49764 * 18 16 7 34 34 H 0.96994 * 118.74101 * 175.46275 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.9575 -0.0513 2.1052 6 6 3.4985 -1.0932 1.0479 7 7 3.7209 -1.8728 -0.1508 8 6 5.0396 -1.9847 -0.5089 9 1 5.7725 -2.2973 0.2202 10 6 5.4332 -1.6960 -1.8098 11 7 4.6623 -0.9640 -2.5823 12 14 7.0582 -2.3482 -2.4605 13 1 8.1344 -1.3639 -2.1808 14 1 7.3784 -3.6350 -1.7921 15 1 6.9536 -2.5642 -3.9260 16 6 2.8914 -2.4886 -0.9616 17 8 3.3899 -3.1106 -1.8757 18 6 1.4021 -2.5110 -0.8763 19 6 0.9431 -2.7790 0.5338 20 8 0.3260 -3.7899 0.7945 21 7 1.2204 -1.9006 1.4866 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.8361 -1.6696 1.9093 30 1 4.0889 -0.1790 0.9868 31 1 3.8581 -0.5592 -2.2214 32 1 1.0170 -3.2913 -1.5327 33 1 1.0141 -1.5458 -1.2017 34 1 0.8637 -2.0495 2.3763 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:35 Heat of formation + Delta-G solvation = -58.546574 kcal Electronic energy + Delta-G solvation = -19019.905748 eV Core-core repulsion = 16146.312625 eV Total energy + Delta-G solvation = -2873.593123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.66388 -40.18646 -38.51102 -36.12363 -34.34589 -33.62384 -32.02755 -29.60299 -27.80003 -26.16677 -25.18320 -22.52025 -21.28101 -20.92979 -19.38353 -18.55831 -17.86052 -17.28812 -16.72600 -16.03079 -15.96007 -15.59155 -15.38685 -14.99594 -14.65145 -14.26753 -13.71565 -13.55778 -13.26380 -13.15698 -12.97773 -12.73370 -12.59347 -12.02875 -12.00702 -11.92434 -11.79191 -11.40248 -11.23540 -10.77828 -10.35366 -9.99379 -9.45653 -8.57302 -6.19246 1.28498 1.48830 1.62439 1.78056 1.99010 2.29375 2.51393 2.88350 3.25422 3.38822 3.58204 3.77499 3.90057 3.99923 4.09241 4.34200 4.34915 4.56233 4.64942 4.77194 4.80017 4.83685 4.92653 5.01403 5.20251 5.35890 5.42659 5.75462 5.80168 6.05515 6.22340 6.77935 7.05214 7.14292 7.48637 8.02323 8.71176 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029357 B = 0.010462 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.549702 B = 2675.798187 C = 3061.150177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.134 4.134 4 C 0.136 3.864 5 H 0.160 0.840 6 C 0.102 3.898 7 N -0.451 5.451 8 C -0.466 4.466 9 H 0.064 0.936 10 C 0.015 3.985 11 N -0.881 5.881 12 Si 1.112 2.888 13 H -0.257 1.257 14 H -0.285 1.285 15 H -0.293 1.293 16 C 0.463 3.537 17 O -0.604 6.604 18 C -0.172 4.172 19 C 0.542 3.458 20 O -0.586 6.586 21 N -0.690 5.690 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.260 0.740 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 8.514 9.879 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.191 4.191 4 C 0.032 3.968 5 H 0.178 0.822 6 C -0.021 4.021 7 N -0.172 5.172 8 C -0.593 4.593 9 H 0.082 0.918 10 C -0.192 4.192 11 N -0.513 5.513 12 Si 0.935 3.065 13 H -0.182 1.182 14 H -0.211 1.211 15 H -0.219 1.219 16 C 0.251 3.749 17 O -0.488 6.488 18 C -0.214 4.214 19 C 0.329 3.671 20 O -0.468 6.468 21 N -0.340 5.340 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.169 0.831 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.683 7.694 8.083 12.523 hybrid contribution -0.979 -0.353 1.244 1.622 sum -6.662 7.341 9.327 13.611 Atomic orbital electron populations 1.21939 0.92973 1.01457 1.03812 1.21995 0.97594 0.98221 0.97691 1.21724 1.00606 0.93490 1.03294 1.21412 0.87861 0.86041 1.01512 0.82217 1.21641 0.96697 0.96528 0.87282 1.42419 1.06465 1.44406 1.23897 1.20061 0.84712 1.54583 0.99947 0.91794 1.27275 1.06120 0.92213 0.93598 1.70692 1.14451 1.26861 1.39334 0.82988 0.71767 0.76403 0.75369 1.18226 1.21052 1.21899 1.18929 0.88244 0.81746 0.85943 1.90614 1.76263 1.46544 1.35405 1.22412 0.94299 1.08121 0.96609 1.19457 0.77883 0.82228 0.87581 1.90705 1.44095 1.28029 1.83963 1.45161 1.51440 1.24206 1.13208 0.91747 0.94053 0.89418 0.92716 0.93812 0.92508 0.89229 0.92218 0.89424 0.92985 0.88437 0.83084 0.74768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 7.80 71.98 0.56 -2.47 16 2 C -0.14 -3.52 1.77 -10.79 -0.02 -3.54 16 3 C -0.13 -2.96 9.01 71.98 0.65 -2.31 16 4 C 0.14 3.29 2.81 44.80 0.13 3.41 16 5 H 0.16 2.20 7.99 -2.39 -0.02 2.18 16 6 C 0.10 3.47 5.34 86.34 0.46 3.94 16 7 N -0.45 -21.59 2.32 -648.42 -1.50 -23.09 16 8 C -0.47 -25.72 8.25 84.04 0.69 -25.03 16 9 H 0.06 3.50 7.91 -2.91 -0.02 3.47 16 10 C 0.02 0.88 3.88 84.92 0.33 1.21 16 11 N -0.88 -52.73 12.56 21.66 0.27 -52.46 16 12 Si 1.11 52.32 29.96 68.60 2.06 54.37 16 13 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 16 C 0.46 23.93 4.69 87.72 0.41 24.34 16 17 O -0.60 -38.08 14.06 -3.06 -0.04 -38.12 16 18 C -0.17 -7.14 4.91 28.63 0.14 -7.00 16 19 C 0.54 20.01 5.63 88.00 0.50 20.51 16 20 O -0.59 -25.33 17.91 -3.03 -0.05 -25.38 16 21 N -0.69 -18.36 4.30 -449.14 -1.93 -20.29 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.04 1.00 5.11 -2.38 -0.01 0.99 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.97 3.69 -2.39 -0.01 1.96 16 26 H 0.04 1.16 7.16 -2.39 -0.02 1.14 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.09 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.09 2.91 7.09 -2.39 -0.02 2.89 16 31 H 0.26 15.30 7.29 -92.71 -0.68 14.62 16 32 H 0.10 4.28 8.03 -2.39 -0.02 4.26 16 33 H 0.15 5.47 3.56 -2.39 -0.01 5.46 16 34 H 0.41 8.56 8.87 -92.71 -0.82 7.74 16 Total: -1.00 -79.05 263.93 3.05 -76.00 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.40 Total: 15.92 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 3.85 Total: 13.06 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -3.16 Total: -95.85 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: -0.10 Total: -63.51 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.06 Total: 54.37 kcal Total: -79.05 3.05 -76.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.454 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds