Wall clock time and date at job start Mon Mar 30 2020 04:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 108.66599 * 2 1 4 4 C 1.51876 * 108.79176 * 118.30269 * 2 1 3 5 5 N 1.45571 * 111.33822 * 55.45046 * 4 2 1 6 6 C 1.46502 * 118.73793 * 251.29686 * 5 4 2 7 7 C 1.32516 * 122.52158 * 71.28055 * 5 4 2 8 8 O 1.21286 * 120.29389 * 184.55389 * 7 5 4 9 9 C 1.50695 * 119.41765 * 4.52190 * 7 5 4 10 10 C 1.49231 * 110.98260 * 295.75260 * 9 7 5 11 11 O 1.21277 * 116.48808 * 226.29172 * 10 9 7 12 12 N 1.31325 * 127.02322 * 46.28512 * 10 9 7 13 13 C 1.46500 * 114.08872 * 177.24059 * 12 10 9 14 14 C 1.50697 * 109.47429 * 269.98861 * 13 12 10 15 15 H 1.08006 * 120.00021 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00245 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99581 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00008 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47271 * 119.99894 * 18 16 14 21 21 H 1.48497 * 109.47041 * 239.99735 * 18 16 14 22 22 H 1.09002 * 109.47208 * 301.69914 * 1 2 3 23 23 H 1.09002 * 109.47051 * 61.69842 * 1 2 3 24 24 H 1.09003 * 109.47402 * 181.69863 * 1 2 3 25 25 H 1.08994 * 109.10361 * 175.93076 * 4 2 1 26 26 H 1.08998 * 109.10328 * 295.03117 * 4 2 1 27 27 H 1.08996 * 109.47223 * 89.99925 * 6 5 4 28 28 H 1.09001 * 109.47245 * 210.00515 * 6 5 4 29 29 H 1.09008 * 109.46870 * 330.00249 * 6 5 4 30 30 H 1.09004 * 109.17577 * 56.13740 * 9 7 5 31 31 H 1.09005 * 109.17919 * 175.35999 * 9 7 5 32 32 H 1.09008 * 109.46607 * 29.98343 * 13 12 10 33 33 H 1.08994 * 109.47776 * 149.98128 * 13 12 10 34 34 H 0.97002 * 119.99773 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8789 1.0326 0.0000 4 6 2.0193 -0.6817 1.2659 5 7 1.4619 -2.0202 1.3960 6 6 0.4476 -2.2639 2.4246 7 6 1.8366 -3.0265 0.6196 8 8 1.2876 -4.1044 0.7074 9 6 2.9505 -2.8197 -0.3741 10 6 2.5640 -1.8164 -1.4090 11 8 2.7996 -2.1102 -2.5618 12 7 1.9962 -0.6498 -1.2061 13 6 1.7980 0.1387 -2.4248 14 6 3.0093 1.0017 -2.6675 15 1 3.8434 0.9666 -1.9822 16 6 3.0526 1.8367 -3.7638 17 7 2.0368 1.8798 -4.5980 18 14 4.5538 2.9068 -4.0641 19 1 5.5505 2.6749 -2.9880 20 1 5.1536 2.5608 -5.3778 21 1 4.1508 4.3361 -4.0651 22 1 -0.3634 0.5400 0.8744 23 1 -0.3633 0.4872 -0.9048 24 1 -0.3634 -1.0272 0.0305 25 1 3.1067 -0.7493 1.2372 26 1 1.7216 -0.0867 2.1293 27 1 -0.5432 -2.0818 2.0083 28 1 0.5149 -3.2977 2.7636 29 1 0.6163 -1.5934 3.2674 30 1 3.8384 -2.4681 0.1514 31 1 3.1762 -3.7682 -0.8616 32 1 1.6540 -0.5319 -3.2720 33 1 0.9183 0.7717 -2.3090 34 1 2.0673 2.4670 -5.3694 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260303186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:23 Heat of formation + Delta-G solvation = -51.234513 kcal Electronic energy + Delta-G solvation = -18241.478072 eV Core-core repulsion = 15368.202024 eV Total energy + Delta-G solvation = -2873.276048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90212 -38.83240 -36.85291 -34.70193 -32.74768 -31.13516 -30.66953 -27.37824 -27.03524 -25.78488 -22.84382 -22.58259 -19.52123 -18.77417 -17.00773 -16.72839 -16.46257 -15.83449 -15.33149 -15.00696 -14.28412 -14.18791 -14.02027 -13.32605 -12.91739 -12.83523 -12.55128 -12.33533 -12.22576 -11.88865 -11.64071 -11.38535 -11.14902 -11.03661 -10.84036 -10.55725 -10.16606 -9.90679 -9.61526 -8.99735 -8.69377 -8.39955 -7.82421 -6.06046 -4.10024 2.55356 2.95352 3.27760 3.35452 3.37675 3.47234 3.80169 4.42029 4.53915 4.78607 4.82869 5.08812 5.10709 5.28957 5.33414 5.40046 5.44383 5.60305 5.67440 5.71957 5.84368 5.95358 6.13138 6.33232 6.45701 7.01854 7.30545 7.36017 7.54532 7.89630 8.12905 8.21285 8.48558 8.89232 9.01744 9.53922 11.02909 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.007399 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.141292 B = 3783.198036 C = 4045.802919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 H 0.103 0.897 4 C 0.101 3.899 5 N -0.604 5.604 6 C 0.079 3.921 7 C 0.527 3.473 8 O -0.543 6.543 9 C -0.158 4.158 10 C 0.514 3.486 11 O -0.541 6.541 12 N -0.580 5.580 13 C 0.223 3.777 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -2.319 15.234 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.121 0.879 4 C -0.022 4.022 5 N -0.336 5.336 6 C -0.064 4.064 7 C 0.315 3.685 8 O -0.421 6.421 9 C -0.201 4.201 10 C 0.299 3.701 11 O -0.420 6.420 12 N -0.310 5.310 13 C 0.103 3.897 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.757 -2.984 14.578 14.984 hybrid contribution 0.842 0.837 -0.151 1.197 sum -0.915 -2.147 14.427 14.614 Atomic orbital electron populations 1.22278 0.95284 1.02071 1.02690 1.20877 0.94842 0.97955 0.83970 0.87934 1.21615 0.99316 0.82483 0.98823 1.47072 1.41536 1.09916 1.35077 1.21784 0.91436 1.02842 0.90339 1.19756 0.84099 0.83640 0.81046 1.90712 1.56387 1.25900 1.69112 1.21905 0.98533 1.02794 0.96836 1.18317 0.80069 0.82011 0.89700 1.90768 1.53732 1.76157 1.21315 1.46776 1.57137 1.16685 1.10386 1.19556 0.96995 0.90633 0.82491 1.21358 1.02592 1.22489 1.09743 0.92517 1.24922 0.96332 0.97165 0.95638 1.69945 1.30452 1.38685 1.14068 0.86456 0.82841 0.79860 0.78311 1.19855 1.20894 1.21026 0.92047 0.91125 0.92798 0.90214 0.87988 0.92481 0.90575 0.91085 0.86914 0.85650 0.92708 0.94888 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.92 37.16 0.33 -1.95 16 2 C 0.13 1.93 2.93 -69.45 -0.20 1.72 16 3 H 0.10 1.54 8.05 -51.93 -0.42 1.13 16 4 C 0.10 1.11 5.19 -5.11 -0.03 1.08 16 5 N -0.60 -7.55 2.07 -183.65 -0.38 -7.93 16 6 C 0.08 0.77 9.97 59.85 0.60 1.37 16 7 C 0.53 8.39 7.09 -11.99 -0.08 8.30 16 8 O -0.54 -10.26 16.56 5.55 0.09 -10.17 16 9 C -0.16 -2.56 5.33 -29.74 -0.16 -2.72 16 10 C 0.51 10.83 7.04 -13.20 -0.09 10.74 16 11 O -0.54 -14.12 15.39 5.56 0.09 -14.03 16 12 N -0.58 -11.74 2.45 -171.03 -0.42 -12.16 16 13 C 0.22 5.66 4.41 -5.19 -0.02 5.64 16 14 C -0.52 -14.32 9.30 -34.44 -0.32 -14.64 16 15 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.14 6.64 -51.93 -0.34 0.79 16 24 H 0.05 0.79 6.86 -51.93 -0.36 0.44 16 25 H 0.08 0.84 7.28 -51.93 -0.38 0.46 16 26 H 0.10 0.75 7.62 -51.93 -0.40 0.35 16 27 H 0.06 0.57 7.63 -51.93 -0.40 0.17 16 28 H 0.08 0.82 7.37 -51.93 -0.38 0.44 16 29 H 0.07 0.47 7.74 -51.92 -0.40 0.07 16 30 H 0.11 1.47 7.54 -51.93 -0.39 1.08 16 31 H 0.13 2.04 8.03 -51.93 -0.42 1.63 16 32 H 0.05 1.63 6.70 -51.92 -0.35 1.28 16 33 H 0.03 0.84 6.40 -51.93 -0.33 0.51 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -34.71 278.38 -5.32 -40.03 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.53 Total: -1.97 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -0.08 Total: 11.18 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.06 Total: -45.59 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.71 -5.32 -40.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.207 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds