Wall clock time and date at job start Mon Mar 30 2020 04:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 108.66599 * 2 1 4 4 C 1.51876 * 108.79176 * 118.30269 * 2 1 3 5 5 N 1.45571 * 111.33822 * 55.45046 * 4 2 1 6 6 C 1.46502 * 118.73793 * 251.29686 * 5 4 2 7 7 C 1.32516 * 122.52158 * 71.28055 * 5 4 2 8 8 O 1.21286 * 120.29389 * 184.55389 * 7 5 4 9 9 C 1.50695 * 119.41765 * 4.52190 * 7 5 4 10 10 C 1.49231 * 110.98260 * 295.75260 * 9 7 5 11 11 O 1.21277 * 116.48808 * 226.29172 * 10 9 7 12 12 N 1.31325 * 127.02322 * 46.28512 * 10 9 7 13 13 C 1.46500 * 114.08872 * 177.24059 * 12 10 9 14 14 C 1.50697 * 109.47429 * 269.98861 * 13 12 10 15 15 H 1.08006 * 120.00021 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00245 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99581 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00008 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47271 * 119.99894 * 18 16 14 21 21 H 1.48497 * 109.47041 * 239.99735 * 18 16 14 22 22 H 1.09002 * 109.47208 * 301.69914 * 1 2 3 23 23 H 1.09002 * 109.47051 * 61.69842 * 1 2 3 24 24 H 1.09003 * 109.47402 * 181.69863 * 1 2 3 25 25 H 1.08994 * 109.10361 * 175.93076 * 4 2 1 26 26 H 1.08998 * 109.10328 * 295.03117 * 4 2 1 27 27 H 1.08996 * 109.47223 * 89.99925 * 6 5 4 28 28 H 1.09001 * 109.47245 * 210.00515 * 6 5 4 29 29 H 1.09008 * 109.46870 * 330.00249 * 6 5 4 30 30 H 1.09004 * 109.17577 * 56.13740 * 9 7 5 31 31 H 1.09005 * 109.17919 * 175.35999 * 9 7 5 32 32 H 1.09008 * 109.46607 * 29.98343 * 13 12 10 33 33 H 1.08994 * 109.47776 * 149.98128 * 13 12 10 34 34 H 0.97002 * 119.99773 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8789 1.0326 0.0000 4 6 2.0193 -0.6817 1.2659 5 7 1.4619 -2.0202 1.3960 6 6 0.4476 -2.2639 2.4246 7 6 1.8366 -3.0265 0.6196 8 8 1.2876 -4.1044 0.7074 9 6 2.9505 -2.8197 -0.3741 10 6 2.5640 -1.8164 -1.4090 11 8 2.7996 -2.1102 -2.5618 12 7 1.9962 -0.6498 -1.2061 13 6 1.7980 0.1387 -2.4248 14 6 3.0093 1.0017 -2.6675 15 1 3.8434 0.9666 -1.9822 16 6 3.0526 1.8367 -3.7638 17 7 2.0368 1.8798 -4.5980 18 14 4.5538 2.9068 -4.0641 19 1 5.5505 2.6749 -2.9880 20 1 5.1536 2.5608 -5.3778 21 1 4.1508 4.3361 -4.0651 22 1 -0.3634 0.5400 0.8744 23 1 -0.3633 0.4872 -0.9048 24 1 -0.3634 -1.0272 0.0305 25 1 3.1067 -0.7493 1.2372 26 1 1.7216 -0.0867 2.1293 27 1 -0.5432 -2.0818 2.0083 28 1 0.5149 -3.2977 2.7636 29 1 0.6163 -1.5934 3.2674 30 1 3.8384 -2.4681 0.1514 31 1 3.1762 -3.7682 -0.8616 32 1 1.6540 -0.5319 -3.2720 33 1 0.9183 0.7717 -2.3090 34 1 2.0673 2.4670 -5.3694 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260303186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:22 Heat of formation + Delta-G solvation = -76.285893 kcal Electronic energy + Delta-G solvation = -18242.564381 eV Core-core repulsion = 15368.202024 eV Total energy + Delta-G solvation = -2874.362357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.26327 -40.32917 -38.21833 -36.19865 -34.71821 -32.54463 -32.10609 -28.92761 -28.36956 -26.92811 -24.68718 -24.03695 -20.74436 -20.26910 -18.65573 -18.08517 -18.00057 -17.29870 -16.82484 -16.45259 -15.98773 -15.68290 -15.44321 -14.54374 -14.41402 -14.06109 -13.82038 -13.70523 -13.38072 -13.22336 -13.12985 -12.96805 -12.69416 -12.53133 -12.35015 -12.25827 -12.05132 -11.60073 -11.26840 -10.68849 -10.51968 -9.83079 -9.58259 -8.19831 -6.32711 1.26757 1.39336 1.42432 1.53370 1.72211 2.06100 2.26848 2.43911 3.12066 3.33312 3.63502 3.76176 3.96384 4.06371 4.34833 4.44831 4.50193 4.57745 4.66526 4.78936 4.83525 4.88442 4.98042 5.06984 5.29517 5.33917 5.39241 5.50119 5.77557 6.08217 6.22786 6.75136 6.84450 6.96239 7.29999 7.42160 8.89293 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.007399 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.141292 B = 3783.198036 C = 4045.802919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 H 0.107 0.893 4 C 0.105 3.895 5 N -0.593 5.593 6 C 0.074 3.926 7 C 0.525 3.475 8 O -0.580 6.580 9 C -0.146 4.146 10 C 0.506 3.494 11 O -0.606 6.606 12 N -0.574 5.574 13 C 0.239 3.761 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.271 1.271 22 H 0.107 0.893 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.093 0.907 26 H 0.157 0.843 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.000 1.000 33 H 0.027 0.973 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -0.880 18.464 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 H 0.125 0.875 4 C -0.018 4.018 5 N -0.323 5.323 6 C -0.067 4.067 7 C 0.312 3.688 8 O -0.461 6.461 9 C -0.188 4.188 10 C 0.293 3.707 11 O -0.489 6.489 12 N -0.302 5.302 13 C 0.117 3.883 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.214 1.214 21 H -0.196 1.196 22 H 0.126 0.874 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.175 0.825 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.170 0.830 31 H 0.137 0.863 32 H 0.018 0.982 33 H 0.045 0.955 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.863 -1.504 17.894 17.978 hybrid contribution 0.478 0.408 -1.144 1.305 sum -0.385 -1.096 16.750 16.790 Atomic orbital electron populations 1.22219 0.94460 1.01618 1.03218 1.21335 0.95529 0.98343 0.83628 0.87533 1.21830 1.00062 0.81731 0.98147 1.47134 1.41208 1.09579 1.34357 1.22028 0.90515 1.03489 0.90717 1.19629 0.83831 0.84009 0.81341 1.90701 1.57392 1.27587 1.70425 1.21747 1.00377 1.00808 0.95868 1.19147 0.78987 0.82524 0.90018 1.90742 1.56396 1.77572 1.24194 1.46850 1.56511 1.16103 1.10784 1.19006 0.96428 0.89535 0.83339 1.21650 1.03030 1.22458 1.09965 0.92104 1.25877 0.99435 0.98709 0.95351 1.70083 1.32687 1.39709 1.14698 0.85344 0.79005 0.78305 0.77992 1.18455 1.21425 1.19598 0.87441 0.94377 0.93923 0.88884 0.82495 0.92573 0.91748 0.86536 0.83033 0.86282 0.98162 0.95516 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 8.92 71.98 0.64 -3.41 16 2 C 0.12 3.17 2.93 44.96 0.13 3.30 16 3 H 0.11 2.92 8.05 -2.39 -0.02 2.90 16 4 C 0.10 1.79 5.19 86.18 0.45 2.23 16 5 N -0.59 -12.70 2.07 -854.60 -1.77 -14.47 16 6 C 0.07 1.15 9.97 127.77 1.27 2.43 16 7 C 0.52 15.86 7.09 88.00 0.62 16.48 16 8 O -0.58 -21.59 16.56 -3.05 -0.05 -21.64 16 9 C -0.15 -4.59 5.33 28.65 0.15 -4.44 16 10 C 0.51 21.72 7.04 87.73 0.62 22.33 16 11 O -0.61 -33.34 15.39 -3.02 -0.05 -33.39 16 12 N -0.57 -23.40 2.45 -815.30 -2.00 -25.39 16 13 C 0.24 12.65 4.41 85.63 0.38 13.03 16 14 C -0.53 -29.58 9.30 25.60 0.24 -29.34 16 15 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 16 C 0.00 0.27 5.46 84.66 0.46 0.73 16 17 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 18 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.04 1.22 6.64 -2.39 -0.02 1.21 16 24 H 0.04 1.19 6.86 -2.39 -0.02 1.17 16 25 H 0.09 1.46 7.28 -2.39 -0.02 1.44 16 26 H 0.16 1.12 7.62 -2.39 -0.02 1.10 16 27 H 0.06 0.92 7.63 -2.39 -0.02 0.90 16 28 H 0.06 1.21 7.37 -2.39 -0.02 1.19 16 29 H 0.12 0.79 7.74 -2.38 -0.02 0.78 16 30 H 0.15 3.52 7.54 -2.39 -0.02 3.50 16 31 H 0.12 3.92 8.03 -2.38 -0.02 3.90 16 32 H 0.00 0.02 6.70 -2.38 -0.02 0.00 16 33 H 0.03 1.44 6.40 -2.39 -0.02 1.42 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -81.27 278.38 4.52 -76.75 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.10 Total: 4.95 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 4.97 Total: 23.35 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -3.48 Total: -95.87 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.10 Total: -55.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -81.27 4.52 -76.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.468 kcal (2) G-P(sol) polarization free energy of solvation -81.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds