Wall clock time and date at job start Mon Mar 30 2020 04:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47754 * 2 1 4 4 C 1.45976 * 120.06165 * 270.17210 * 3 2 1 5 5 C 1.49113 * 111.64012 * 114.80304 * 4 3 2 6 6 O 1.21283 * 116.37322 * 226.60804 * 5 4 3 7 7 N 1.31266 * 127.25812 * 46.31877 * 5 4 3 8 8 C 1.46504 * 114.05870 * 178.41599 * 7 5 4 9 9 C 1.50706 * 109.46933 * 89.99530 * 8 7 5 10 10 H 1.07999 * 120.00204 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99615 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00414 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99854 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47161 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47200 * 120.00262 * 13 11 9 16 16 H 1.48504 * 109.47036 * 239.99983 * 13 11 9 17 17 C 1.44827 * 131.88348 * 358.38961 * 7 5 4 18 18 C 1.52023 * 112.61797 * 12.93325 * 17 7 5 19 19 C 1.32400 * 120.18259 * 89.99703 * 3 2 1 20 20 O 1.21279 * 118.82681 * 5.92460 * 19 3 2 21 21 H 1.09003 * 109.46539 * 300.00073 * 1 2 3 22 22 H 1.09004 * 109.47035 * 59.99395 * 1 2 3 23 23 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46917 * 240.00286 * 2 1 3 25 25 H 1.09004 * 109.47035 * 120.00605 * 2 1 3 26 26 H 1.09001 * 109.07549 * 354.17505 * 4 3 2 27 27 H 1.08999 * 108.87748 * 235.30039 * 4 3 2 28 28 H 1.08999 * 109.47385 * 209.99667 * 8 7 5 29 29 H 1.08997 * 109.47195 * 330.00100 * 8 7 5 30 30 H 0.96995 * 120.00361 * 179.97438 * 12 11 9 31 31 H 1.08995 * 108.85521 * 133.74891 * 17 7 5 32 32 H 1.09001 * 108.85328 * 252.23230 * 17 7 5 33 33 H 1.09005 * 109.18592 * 56.00816 * 18 17 7 34 34 H 1.08999 * 109.19472 * 175.31742 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2587 2.0718 -1.2634 5 6 1.3317 3.2256 -1.4443 6 8 0.7929 3.3193 -2.5268 7 7 1.0296 4.1484 -0.5609 8 6 0.1098 5.1740 -1.0594 9 6 -1.3108 4.7464 -0.7943 10 1 -1.5087 3.8051 -0.3033 11 6 -2.3577 5.5575 -1.1777 12 7 -2.1168 6.7041 -1.7752 13 14 -4.1186 5.0278 -0.8485 14 1 -4.1195 3.7075 -0.1687 15 1 -4.7833 6.0319 0.0205 16 1 -4.8528 4.9232 -2.1351 17 6 1.4372 4.3396 0.8156 18 6 2.6142 3.4594 1.2044 19 6 2.2404 2.0087 1.1445 20 8 2.1371 1.3881 2.1813 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.1187 1.3698 -2.0854 27 1 3.2864 2.4347 -1.2771 28 1 0.3065 6.1172 -0.5496 29 1 0.2562 5.3032 -2.1317 30 1 -2.8533 7.2745 -2.0452 31 1 1.7157 5.3836 0.9587 32 1 0.5953 4.1075 1.4678 33 1 3.4417 3.6447 0.5195 34 1 2.9267 3.7066 2.2189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260599407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:15 Heat of formation + Delta-G solvation = -79.248114 kcal Electronic energy + Delta-G solvation = -18177.969786 eV Core-core repulsion = 15303.478978 eV Total energy + Delta-G solvation = -2874.490809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15606 -40.40340 -37.27872 -36.78351 -34.97586 -33.13389 -31.65518 -29.69312 -28.12199 -26.25658 -24.70160 -23.93256 -20.81946 -20.25184 -18.94126 -18.30583 -17.60519 -17.46973 -16.96879 -16.42593 -15.96995 -15.57199 -15.10051 -14.91629 -14.49662 -14.25385 -14.03020 -13.58482 -13.46151 -13.34960 -13.07316 -12.92283 -12.69595 -12.65562 -12.51387 -12.18633 -12.02814 -11.68272 -11.06945 -10.85670 -10.60038 -9.77676 -9.58784 -8.24160 -6.35289 1.32455 1.33965 1.35571 1.46216 1.63684 2.14303 2.29983 2.40239 3.06937 3.33321 3.68594 3.84914 3.99470 4.10394 4.13540 4.28626 4.44201 4.51420 4.54079 4.68819 4.73400 4.86881 4.92475 4.99442 5.19091 5.31267 5.37654 5.40555 5.72703 6.06091 6.23827 6.70602 6.84508 7.02290 7.28716 7.42927 8.84224 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.008169 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.965142 B = 3426.745211 C = 3644.314067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.596 5.596 4 C 0.111 3.889 5 C 0.482 3.518 6 O -0.599 6.599 7 N -0.582 5.582 8 C 0.238 3.762 9 C -0.532 4.532 10 H 0.041 0.959 11 C 0.011 3.989 12 N -0.924 5.924 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.269 1.269 16 H -0.279 1.279 17 C 0.129 3.871 18 C -0.142 4.142 19 C 0.510 3.490 20 O -0.584 6.584 21 H 0.028 0.972 22 H 0.038 0.962 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.561 -9.481 4.372 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.328 5.328 4 C -0.015 4.015 5 C 0.269 3.731 6 O -0.481 6.481 7 N -0.311 5.311 8 C 0.116 3.884 9 C -0.571 4.571 10 H 0.059 0.941 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.194 1.194 16 H -0.205 1.205 17 C 0.006 3.994 18 C -0.181 4.181 19 C 0.299 3.701 20 O -0.465 6.465 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.111 0.889 24 H 0.133 0.867 25 H 0.107 0.893 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.214 -9.663 4.328 15.423 hybrid contribution -1.430 0.212 -0.063 1.447 sum 9.784 -9.450 4.264 14.256 Atomic orbital electron populations 1.22104 0.96878 1.03008 1.00404 1.21701 0.93523 0.80932 1.05034 1.47348 1.64612 1.15084 1.05753 1.21568 0.99717 0.92401 0.87793 1.20270 0.83964 0.84562 0.84281 1.90765 1.53501 1.76652 1.27158 1.46867 1.45083 1.26567 1.12561 1.19036 0.87649 0.86495 0.95221 1.21533 0.92480 1.04458 1.38604 0.94095 1.25721 1.03350 0.94981 0.94750 1.70027 1.33295 1.11983 1.41101 0.85494 0.79699 0.78342 0.78032 1.19904 1.19385 1.20510 1.20914 0.96444 1.01409 0.80641 1.21798 0.99469 0.89017 1.07845 1.20445 0.76049 0.90545 0.83040 1.90677 1.53841 1.68220 1.33765 0.95299 0.94286 0.88891 0.86678 0.89289 0.84767 0.84775 0.95459 0.96572 0.92435 0.87702 0.93186 0.85911 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 10.24 71.98 0.74 -3.81 16 2 C 0.11 2.50 6.11 86.38 0.53 3.02 16 3 N -0.60 -15.53 2.58 -834.88 -2.15 -17.68 16 4 C 0.11 2.77 5.66 85.24 0.48 3.25 16 5 C 0.48 18.73 7.24 87.70 0.63 19.37 16 6 O -0.60 -29.83 15.34 -3.04 -0.05 -29.88 16 7 N -0.58 -23.48 2.79 -839.41 -2.34 -25.83 16 8 C 0.24 12.45 4.61 85.63 0.40 12.84 16 9 C -0.53 -30.79 9.24 25.60 0.24 -30.55 16 10 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 11 C 0.01 0.64 5.46 84.65 0.46 1.10 16 12 N -0.92 -55.57 13.29 21.45 0.28 -55.28 16 13 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 14 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 C 0.13 3.98 5.85 86.37 0.51 4.48 16 18 C -0.14 -3.19 5.42 29.29 0.16 -3.03 16 19 C 0.51 14.58 6.92 87.78 0.61 15.19 16 20 O -0.58 -20.35 16.41 -3.03 -0.05 -20.40 16 21 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.12 1.81 7.87 -2.38 -0.02 1.79 16 25 H 0.09 2.07 7.27 -2.39 -0.02 2.05 16 26 H 0.13 2.93 7.63 -2.39 -0.02 2.92 16 27 H 0.13 2.26 7.54 -2.39 -0.02 2.25 16 28 H 0.03 1.43 7.66 -2.39 -0.02 1.41 16 29 H 0.02 0.97 6.78 -2.39 -0.02 0.96 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.10 2.84 7.79 -2.39 -0.02 2.82 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.12 2.02 7.35 -2.38 -0.02 2.00 16 34 H 0.14 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -77.87 284.71 3.55 -74.32 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.09 Total: 5.13 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 4.75 Total: 21.87 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.21 Total: -98.79 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.10 Total: -50.28 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.87 3.55 -74.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.928 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds