Wall clock time and date at job start Mon Mar 30 2020 03:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 N 1.46503 * 109.47297 * 119.99710 * 2 1 3 5 5 C 1.34551 * 119.50621 * 299.72938 * 4 2 1 6 6 O 1.21236 * 120.02176 * 4.68864 * 5 4 2 7 7 C 1.50814 * 119.96569 * 184.71099 * 5 4 2 8 8 C 1.53041 * 109.18286 * 325.76591 * 7 5 4 9 9 N 1.46408 * 109.51684 * 46.69501 * 8 7 5 10 10 C 1.46502 * 119.53629 * 144.16442 * 9 8 7 11 11 C 1.50693 * 109.47566 * 269.98143 * 10 9 8 12 12 H 1.07999 * 119.99891 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00388 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00174 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46902 * 90.00241 * 15 13 11 17 17 H 1.48501 * 109.47218 * 209.99811 * 15 13 11 18 18 H 1.48495 * 109.47164 * 330.00322 * 15 13 11 19 19 C 1.34289 * 120.93404 * 324.14498 * 9 8 7 20 20 O 1.21532 * 119.21456 * 185.67030 * 19 9 8 21 21 H 1.08995 * 109.47142 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47473 * 299.99897 * 1 2 3 23 23 H 1.08999 * 109.47588 * 60.00136 * 1 2 3 24 24 H 1.09001 * 109.47279 * 240.00464 * 2 1 3 25 25 H 1.09002 * 109.47072 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47282 * 300.00050 * 3 2 1 27 27 H 1.09001 * 109.47167 * 60.00400 * 3 2 1 28 28 H 1.09000 * 109.51900 * 205.85823 * 7 5 4 29 29 H 1.08996 * 109.51740 * 85.68051 * 7 5 4 30 30 H 1.08993 * 109.46258 * 286.68052 * 8 7 5 31 31 H 1.08994 * 109.46216 * 166.70523 * 8 7 5 32 32 H 1.09000 * 109.47102 * 29.98134 * 10 9 8 33 33 H 1.09005 * 109.47096 * 149.97482 * 10 9 8 34 34 H 0.97001 * 119.99836 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6918 -0.2190 2.4133 6 8 0.9299 0.7184 2.5163 7 6 2.2744 -0.8569 3.6495 8 6 2.4409 -2.3592 3.4094 9 7 3.0689 -2.5794 2.1053 10 6 4.0144 -3.6856 1.9365 11 6 5.4087 -3.2068 2.2485 12 1 5.5742 -2.1809 2.5427 13 6 6.4732 -4.0784 2.1585 14 7 7.6902 -3.6603 2.4304 15 14 6.1870 -5.8530 1.6505 16 1 6.2889 -5.9675 0.1733 17 1 7.2106 -6.7211 2.2860 18 1 4.8341 -6.2811 2.0880 19 6 2.7901 -1.7819 1.0614 20 8 3.2471 -2.0537 -0.0314 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6037 -0.6952 4.4934 29 1 3.2461 -0.4126 3.8651 30 1 1.4632 -2.8404 3.4276 31 1 3.0696 -2.7845 4.1916 32 1 3.7488 -4.4971 2.6141 33 1 3.9748 -4.0437 0.9077 34 1 8.4392 -4.2734 2.3667 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260839554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:13 Heat of formation + Delta-G solvation = -55.977461 kcal Electronic energy + Delta-G solvation = -18109.653972 eV Core-core repulsion = 15236.172254 eV Total energy + Delta-G solvation = -2873.481718 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45455 -38.51988 -36.42392 -35.10877 -33.20450 -31.95344 -30.64537 -27.76419 -27.11697 -24.67162 -23.39781 -22.30480 -20.71112 -18.08202 -17.68182 -16.99654 -16.59049 -16.04895 -14.89875 -14.50461 -14.36153 -14.25769 -13.91723 -13.70969 -13.26682 -12.78742 -12.60772 -12.39840 -12.32286 -12.04765 -11.65834 -11.36701 -11.19726 -11.11634 -10.91918 -10.58549 -10.24585 -9.79691 -9.61794 -9.55969 -9.30226 -8.66677 -7.96934 -6.16619 -4.17081 2.12357 2.71160 3.24435 3.30256 3.32803 3.61163 3.69491 4.32574 4.69962 4.87009 5.00832 5.14321 5.15854 5.19330 5.29654 5.46495 5.63175 5.68845 5.80770 5.90304 5.91861 5.97296 6.16366 6.27472 6.33043 6.49588 6.77184 7.01906 7.28024 7.49762 7.80312 8.17912 8.36427 8.78405 8.86290 9.42328 10.96411 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035607 B = 0.007289 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.181689 B = 3840.413894 C = 4055.320073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 C -0.165 4.165 4 N -0.567 5.567 5 C 0.526 3.474 6 O -0.515 6.515 7 C -0.160 4.160 8 C 0.113 3.887 9 N -0.597 5.597 10 C 0.226 3.774 11 C -0.536 4.536 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.701 3.299 20 O -0.554 6.554 21 H 0.053 0.947 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 4.383 0.799 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.032 3.968 3 C -0.223 4.223 4 N -0.313 5.313 5 C 0.316 3.684 6 O -0.390 6.390 7 C -0.200 4.200 8 C -0.010 4.010 9 N -0.332 5.332 10 C 0.106 3.894 11 C -0.575 4.575 12 H 0.093 0.907 13 C -0.128 4.128 14 N -0.532 5.532 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.190 1.190 19 C 0.403 3.597 20 O -0.429 6.429 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.126 0.874 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.030 4.616 0.279 13.826 hybrid contribution 0.202 -0.892 -0.157 0.928 sum -12.827 3.725 0.121 13.358 Atomic orbital electron populations 1.22215 0.94293 1.02259 1.03656 1.21199 0.94552 0.93512 0.87515 1.22143 1.01636 0.95224 1.03254 1.46301 1.49251 1.27325 1.08461 1.20944 0.79705 0.82923 0.84871 1.90612 1.33612 1.27809 1.86923 1.22285 1.04578 0.97087 0.96039 1.21481 0.98605 0.93677 0.87285 1.47233 1.46024 1.31915 1.08022 1.19746 0.87778 0.83550 0.98309 1.21307 0.89422 0.99299 1.47438 0.90701 1.24836 0.94857 0.98692 0.94436 1.69891 0.98897 1.35880 1.48548 0.86852 0.78400 0.84844 0.79605 1.19808 1.20983 1.18954 1.15684 0.78913 0.79611 0.85486 1.90890 1.54184 1.72943 1.24865 0.92801 0.90232 0.91414 0.87411 0.92253 0.91307 0.90859 0.86500 0.86863 0.91805 0.87723 0.94526 0.93854 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.11 37.16 0.34 -1.81 16 2 C 0.13 2.06 3.11 -67.93 -0.21 1.85 16 3 C -0.16 -2.29 9.11 37.16 0.34 -1.95 16 4 N -0.57 -9.85 2.50 -113.86 -0.28 -10.14 16 5 C 0.53 8.31 6.88 -11.03 -0.08 8.23 16 6 O -0.51 -8.52 13.22 5.60 0.07 -8.45 16 7 C -0.16 -2.10 6.28 -27.81 -0.17 -2.27 16 8 C 0.11 1.65 6.58 -4.07 -0.03 1.62 16 9 N -0.60 -11.88 2.78 -181.16 -0.50 -12.38 16 10 C 0.23 5.24 4.18 -5.20 -0.02 5.22 16 11 C -0.54 -14.70 9.94 -34.45 -0.34 -15.04 16 12 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 15 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 19 C 0.70 14.51 7.95 -87.74 -0.70 13.81 16 20 O -0.55 -13.41 15.01 5.34 0.08 -13.33 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.08 1.11 5.99 -51.92 -0.31 0.80 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.11 1.76 6.87 -51.93 -0.36 1.41 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.07 6.27 -51.93 -0.33 0.75 16 28 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.45 8.01 -51.93 -0.42 1.04 16 32 H 0.04 0.79 7.12 -51.93 -0.37 0.42 16 33 H 0.04 1.08 6.70 -51.93 -0.35 0.73 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 278.62 15.07 4.20 4.20 Total: -1.00 -32.52 278.62 -5.98 -38.50 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.68 Total: -0.13 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -0.97 Total: 11.66 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.01 Total: -48.48 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.15 Total: -21.78 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.52 -5.98 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260839554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.482 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds