Wall clock time and date at job start Mon Mar 30 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47357 * 2 1 4 4 C 1.44715 * 114.08654 * 89.99803 * 3 2 1 5 5 C 1.51869 * 112.91809 * 192.95738 * 4 3 2 6 6 H 1.09001 * 109.05528 * 174.11415 * 5 4 3 7 7 C 1.53000 * 109.10719 * 55.04053 * 5 4 3 8 8 N 1.45573 * 111.33969 * 294.56068 * 5 4 3 9 9 C 1.37098 * 118.73791 * 251.26627 * 8 5 4 10 10 H 1.08002 * 120.00348 * 317.79806 * 9 8 5 11 11 C 1.38950 * 119.99766 * 137.79634 * 9 8 5 12 12 N 1.31418 * 120.00252 * 151.37346 * 11 9 8 13 13 Si 1.86800 * 119.99964 * 331.36656 * 11 9 8 14 14 H 1.48503 * 109.47232 * 270.00247 * 13 11 9 15 15 H 1.48492 * 109.47137 * 30.00400 * 13 11 9 16 16 H 1.48504 * 109.47034 * 150.00078 * 13 11 9 17 17 C 1.32518 * 122.52307 * 71.54172 * 8 5 4 18 18 O 1.21294 * 120.29649 * 184.24292 * 17 8 5 19 19 C 1.50669 * 119.43828 * 4.03397 * 17 8 5 20 20 C 1.31334 * 114.08625 * 270.01680 * 3 2 1 21 21 O 1.21280 * 116.49047 * 357.17898 * 20 3 2 22 22 H 1.09000 * 109.47151 * 300.00512 * 1 2 3 23 23 H 1.09000 * 109.47057 * 59.99654 * 1 2 3 24 24 H 1.08995 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47074 * 239.99960 * 2 1 3 26 26 H 1.09000 * 109.47308 * 119.99604 * 2 1 3 27 27 H 1.09004 * 108.79250 * 72.06966 * 4 3 2 28 28 H 1.09000 * 108.79205 * 313.84734 * 4 3 2 29 29 H 1.08997 * 109.47251 * 325.45415 * 7 5 4 30 30 H 1.08996 * 109.47264 * 85.45905 * 7 5 4 31 31 H 1.09005 * 109.47226 * 205.45623 * 7 5 4 32 32 H 0.96999 * 119.99529 * 354.90470 * 12 11 9 33 33 H 1.09003 * 109.16612 * 175.66118 * 19 17 8 34 34 H 1.08993 * 108.99908 * 56.54359 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2152 1.9380 1.3211 5 6 2.4148 3.4434 1.3047 6 1 2.4517 3.8088 2.3310 7 6 1.2349 4.0973 0.5828 8 7 3.6498 3.8067 0.6249 9 6 4.6980 4.2806 1.3708 10 1 4.5181 4.9880 2.1669 11 6 5.9918 3.8507 1.1026 12 7 7.0126 4.6364 1.3631 13 14 6.2804 2.1560 0.3720 14 1 6.4443 1.1662 1.4669 15 1 5.1177 1.7752 -0.4695 16 1 7.5087 2.1792 -0.4623 17 6 3.7980 3.7018 -0.6878 18 8 4.8689 3.9427 -1.2039 19 6 2.6260 3.2761 -1.5336 20 6 2.1967 1.8866 -1.1990 21 8 1.9905 1.1439 -2.1353 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0919 1.4724 1.7714 28 1 1.3438 1.7060 1.9334 29 1 0.8964 3.4465 -0.2234 30 1 0.4196 4.2555 1.2887 31 1 1.5482 5.0557 0.1687 32 1 6.8601 5.5429 1.6728 33 1 2.9090 3.3200 -2.5853 34 1 1.7952 3.9596 -1.3585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:11 Heat of formation + Delta-G solvation = -26.959339 kcal Electronic energy + Delta-G solvation = -18947.877516 eV Core-core repulsion = 16075.654119 eV Total energy + Delta-G solvation = -2872.223397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09500 -38.70640 -36.45294 -34.67328 -33.05520 -31.07468 -30.14265 -29.72052 -26.42703 -24.10797 -23.36116 -22.31867 -19.51680 -18.81862 -17.92447 -16.56613 -16.30897 -15.91541 -15.05996 -14.55877 -14.39543 -13.90153 -13.65641 -13.42435 -13.38526 -12.87444 -12.48352 -12.42632 -12.02145 -11.96819 -11.86851 -11.37638 -11.19272 -10.94352 -10.55753 -10.42326 -9.91342 -9.71936 -9.54013 -8.74950 -8.58166 -8.35602 -7.73915 -6.70344 -4.08554 2.82479 3.21447 3.35504 3.57708 3.66575 3.91823 4.37194 4.57201 4.89684 4.96043 5.03261 5.21212 5.24457 5.29684 5.39100 5.43476 5.51108 5.55934 5.57075 5.75164 5.90016 6.04488 6.05560 6.17261 6.18414 6.21961 6.31997 6.52764 7.78145 7.81357 8.23273 8.39114 8.53798 8.84296 9.35320 9.78242 10.66757 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.011108 C = 0.010582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.523895 B = 2520.039771 C = 2645.417169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.084 3.916 3 N -0.588 5.588 4 C 0.103 3.897 5 C 0.118 3.882 6 H 0.106 0.894 7 C -0.179 4.179 8 N -0.445 5.445 9 C -0.456 4.456 10 H 0.081 0.919 11 C 0.072 3.928 12 N -0.854 5.854 13 Si 1.078 2.922 14 H -0.307 1.307 15 H -0.288 1.288 16 H -0.286 1.286 17 C 0.475 3.525 18 O -0.548 6.548 19 C -0.175 4.175 20 C 0.534 3.466 21 O -0.565 6.565 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.275 0.725 33 H 0.115 0.885 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 -5.814 2.048 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.039 4.039 3 N -0.319 5.319 4 C -0.021 4.021 5 C 0.013 3.987 6 H 0.124 0.876 7 C -0.237 4.237 8 N -0.166 5.166 9 C -0.580 4.580 10 H 0.098 0.902 11 C -0.142 4.142 12 N -0.484 5.484 13 Si 0.908 3.092 14 H -0.236 1.236 15 H -0.214 1.214 16 H -0.212 1.212 17 C 0.262 3.738 18 O -0.430 6.430 19 C -0.218 4.218 20 C 0.322 3.678 21 O -0.446 6.446 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.250 -6.983 0.896 14.129 hybrid contribution -1.285 1.198 0.666 1.879 sum -13.535 -5.785 1.562 14.802 Atomic orbital electron populations 1.22025 0.95798 1.01933 1.02055 1.21639 0.94588 0.83978 1.03730 1.46570 1.64532 1.15140 1.05688 1.21557 1.02028 0.95892 0.82635 1.21090 0.86514 0.91775 0.99322 0.87558 1.22706 0.98139 1.01589 1.01265 1.43048 1.12379 1.56772 1.04400 1.20173 0.86276 1.30181 1.21395 0.90151 1.26278 0.91004 1.03950 0.92980 1.70826 1.33087 1.08121 1.36368 0.83432 0.76532 0.73977 0.75242 1.23640 1.21450 1.21218 1.19040 0.89116 0.82718 0.82920 1.90474 1.27368 1.53245 1.71907 1.22361 1.01132 0.94582 1.03694 1.18849 0.76851 0.89768 0.82291 1.90666 1.53105 1.58014 1.42783 0.92743 0.92308 0.91843 0.88900 0.90783 0.90784 0.90145 0.91860 0.91876 0.91214 0.91498 0.86624 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.18 37.16 0.38 -1.38 16 2 C 0.08 1.14 5.55 -4.04 -0.02 1.12 16 3 N -0.59 -9.67 2.48 -177.38 -0.44 -10.11 16 4 C 0.10 1.52 5.39 -5.57 -0.03 1.49 16 5 C 0.12 1.98 3.04 -69.00 -0.21 1.77 16 6 H 0.11 1.67 7.84 -51.93 -0.41 1.26 16 7 C -0.18 -2.47 7.60 37.16 0.28 -2.19 16 8 N -0.45 -10.18 1.99 -109.59 -0.22 -10.40 16 9 C -0.46 -12.24 9.23 -14.93 -0.14 -12.38 16 10 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 11 C 0.07 2.08 4.48 -17.47 -0.08 2.00 16 12 N -0.85 -25.94 13.69 55.50 0.76 -25.18 16 13 Si 1.08 28.72 26.32 -169.99 -4.47 24.25 16 14 H -0.31 -7.59 7.11 56.52 0.40 -7.18 16 15 H -0.29 -7.68 5.66 56.52 0.32 -7.36 16 16 H -0.29 -7.92 7.11 56.52 0.40 -7.51 16 17 C 0.47 11.50 4.71 -12.00 -0.06 11.44 16 18 O -0.55 -15.79 13.08 5.55 0.07 -15.72 16 19 C -0.18 -3.43 5.12 -29.75 -0.15 -3.58 16 20 C 0.53 10.27 5.97 -13.19 -0.08 10.20 16 21 O -0.57 -11.95 15.39 5.56 0.09 -11.87 16 22 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.45 6.70 -51.93 -0.35 1.10 16 26 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 29 H 0.06 0.87 4.36 -51.93 -0.23 0.64 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.04 7.46 -51.93 -0.39 0.65 16 32 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 33 H 0.12 2.28 8.03 -51.93 -0.42 1.86 16 34 H 0.12 1.99 4.59 -51.93 -0.24 1.75 16 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -34.34 265.99 -4.91 -39.25 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.60 Total: -2.73 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.11 Total: 8.50 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.10 Total: -45.69 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.16 Total: -27.59 kcal Atomic # 14 Polarization: 28.72 SS G_CDS: -4.47 Total: 24.25 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.34 -4.91 -39.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.289 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds