Wall clock time and date at job start Mon Mar 30 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 C 1.53002 * 109.46904 * 120.00520 * 2 1 3 5 5 H 1.08997 * 109.10843 * 59.13086 * 4 2 1 6 6 C 1.49899 * 109.11309 * 299.99473 * 4 2 1 7 7 O 1.21281 * 118.64663 * 79.26582 * 6 4 2 8 8 N 1.33661 * 122.71279 * 259.28747 * 6 4 2 9 9 C 1.45657 * 122.84889 * 0.08113 * 8 6 4 10 10 C 1.49906 * 111.29732 * 340.52919 * 9 8 6 11 11 O 1.21278 * 118.64975 * 199.40957 * 10 9 8 12 12 N 1.33666 * 122.71005 * 19.69729 * 10 9 8 13 13 C 1.46502 * 118.57861 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47072 * 89.99736 * 13 12 10 15 15 H 1.07999 * 119.99724 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99890 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00123 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99923 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47579 * 89.99639 * 18 16 14 20 20 H 1.48506 * 109.46987 * 209.99888 * 18 16 14 21 21 H 1.48500 * 109.47328 * 329.99480 * 18 16 14 22 22 H 1.08997 * 109.46947 * 300.00127 * 1 2 3 23 23 H 1.09007 * 109.47288 * 59.99382 * 1 2 3 24 24 H 1.09001 * 109.47582 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46882 * 240.00399 * 2 1 3 26 26 H 1.09006 * 109.47277 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47644 * 300.00331 * 3 2 1 28 28 H 1.09001 * 109.46790 * 60.00342 * 3 2 1 29 29 H 0.97001 * 118.57966 * 180.10594 * 8 6 4 30 30 H 1.09004 * 109.11495 * 220.06533 * 9 8 6 31 31 H 1.08995 * 109.11589 * 100.99664 * 9 8 6 32 32 H 1.09001 * 109.46654 * 210.00070 * 13 12 10 33 33 H 1.09002 * 109.46572 * 329.99915 * 13 12 10 34 34 H 0.97002 * 120.00374 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6606 -1.7432 1.2510 6 6 1.5359 -0.0085 2.4677 7 8 0.3935 -0.2041 2.8249 8 7 2.2935 0.8341 3.1767 9 6 3.6751 1.1374 2.8295 10 6 4.2543 0.0859 1.9315 11 8 5.4605 -0.0038 1.8439 12 7 3.4959 -0.7532 1.2191 13 6 4.1578 -1.7472 0.3706 14 6 4.3880 -3.0093 1.1613 15 1 4.0724 -3.0654 2.1927 16 6 5.0005 -4.0926 0.5678 17 7 5.2018 -5.1938 1.2580 18 14 5.5456 -3.9957 -1.2162 19 1 6.9392 -3.4871 -1.2811 20 1 5.4831 -5.3478 -1.8270 21 1 4.6477 -3.0751 -1.9589 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.9065 1.2620 3.9565 30 1 4.2685 1.1936 3.7421 31 1 3.7122 2.1008 2.3210 32 1 3.5267 -1.9678 -0.4904 33 1 5.1148 -1.3533 0.0283 34 1 5.6331 -5.9558 0.8406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:19 Heat of formation + Delta-G solvation = -92.780462 kcal Electronic energy + Delta-G solvation = -18364.859155 eV Core-core repulsion = 15489.781540 eV Total energy + Delta-G solvation = -2875.077615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.38029 -40.07646 -37.67081 -36.34101 -35.46574 -34.24214 -30.50675 -29.35241 -28.06878 -27.37082 -24.92880 -22.89901 -21.62114 -19.44058 -19.18880 -18.73894 -18.30967 -17.56143 -16.90616 -16.27266 -16.00341 -15.36566 -15.17482 -14.87501 -14.85831 -14.55399 -14.17592 -13.76648 -13.68827 -13.40618 -13.04360 -12.87846 -12.54471 -12.34572 -12.12547 -11.98799 -11.86944 -11.74942 -11.18483 -10.88512 -10.83185 -10.24407 -9.62242 -8.35019 -6.41626 1.26883 1.34191 1.37928 1.46237 1.54148 1.94011 2.18166 2.30760 2.98186 3.08889 3.41859 3.70381 3.94551 4.12575 4.27076 4.36124 4.42047 4.58029 4.76083 4.80839 4.89334 4.94590 4.96892 5.13083 5.24213 5.33032 5.42096 5.43624 5.63659 5.91850 6.17375 6.49553 6.59644 6.90440 7.12856 7.24700 8.82020 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.009002 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.468347 B = 3109.540114 C = 3368.837743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.146 4.146 4 C 0.130 3.870 5 H 0.098 0.902 6 C 0.529 3.471 7 O -0.560 6.560 8 N -0.702 5.702 9 C 0.108 3.892 10 C 0.490 3.510 11 O -0.579 6.579 12 N -0.582 5.582 13 C 0.221 3.779 14 C -0.540 4.540 15 H 0.024 0.976 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.949 3.051 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.233 1.233 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.421 0.579 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 16.332 -3.006 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.203 4.203 4 C 0.022 3.978 5 H 0.116 0.884 6 C 0.315 3.685 7 O -0.439 6.439 8 N -0.357 5.357 9 C -0.019 4.019 10 C 0.279 3.721 11 O -0.459 6.459 12 N -0.313 5.313 13 C 0.099 3.901 14 C -0.579 4.579 15 H 0.042 0.958 16 C -0.186 4.186 17 N -0.585 5.585 18 Si 0.771 3.229 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.156 1.156 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.261 0.739 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.560 15.924 -3.038 17.888 hybrid contribution 0.503 -0.780 0.078 0.932 sum -7.056 15.144 -2.960 16.967 Atomic orbital electron populations 1.21831 0.92538 1.02529 1.03000 1.21506 0.97571 0.97481 0.95432 1.21898 1.00707 0.94293 1.03394 1.21204 0.80081 1.01385 0.95090 0.88433 1.19845 0.85508 0.78932 0.84218 1.90740 1.19043 1.64856 1.69225 1.45261 1.12818 1.46128 1.31539 1.21589 0.81762 0.97524 1.00995 1.20767 0.87146 0.82916 0.81301 1.90738 1.15894 1.72482 1.66818 1.47440 1.05770 1.33217 1.44848 1.19446 0.94047 0.85954 0.90612 1.21484 1.39902 0.98172 0.98329 0.95797 1.25873 0.94851 0.94388 1.03526 1.70053 1.44099 1.04920 1.39395 0.85703 0.79793 0.78577 0.78852 1.19791 1.20270 1.15613 0.92334 0.90045 0.92900 0.89432 0.93389 0.89874 0.92024 0.73896 0.84637 0.84489 0.92906 0.94725 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.69 71.98 0.63 -2.63 16 2 C -0.10 -2.58 2.80 -10.80 -0.03 -2.61 16 3 C -0.15 -3.05 8.04 71.98 0.58 -2.47 16 4 C 0.13 4.32 2.34 44.15 0.10 4.43 16 5 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 6 C 0.53 16.13 5.42 87.58 0.47 16.61 16 7 O -0.56 -19.42 15.91 -3.03 -0.05 -19.47 16 8 N -0.70 -16.09 5.24 -472.31 -2.48 -18.57 16 9 C 0.11 2.43 6.68 85.54 0.57 3.00 16 10 C 0.49 18.09 6.41 87.58 0.56 18.65 16 11 O -0.58 -26.62 16.32 -3.02 -0.05 -26.67 16 12 N -0.58 -22.76 1.99 -812.40 -1.61 -24.37 16 13 C 0.22 10.35 4.00 85.63 0.34 10.69 16 14 C -0.54 -31.46 9.93 25.60 0.25 -31.21 16 15 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 16 C 0.01 0.69 5.47 84.66 0.46 1.16 16 17 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 18 Si 0.95 43.35 27.47 68.60 1.88 45.24 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.23 -9.38 6.54 99.48 0.65 -8.73 16 22 H 0.06 1.47 6.18 -2.39 -0.01 1.45 16 23 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 2.31 7.50 -2.39 -0.02 2.29 16 26 H 0.05 1.12 6.83 -2.38 -0.02 1.10 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.18 6.99 -2.39 -0.02 1.17 16 29 H 0.42 7.23 8.84 -92.71 -0.82 6.41 16 30 H 0.14 2.52 8.14 -2.38 -0.02 2.51 16 31 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 2.26 6.44 -2.39 -0.02 2.25 16 33 H 0.03 1.70 6.66 -2.39 -0.02 1.69 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -76.46 276.03 2.18 -74.28 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.24 Total: 13.27 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 3.94 Total: 15.60 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.79 Total: -102.26 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.10 Total: -46.14 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.24 kcal Total: -76.46 2.18 -74.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.497 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds