Wall clock time and date at job start Mon Mar 30 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47499 * 2 1 4 4 N 1.46505 * 109.47261 * 120.00407 * 2 1 3 5 5 C 1.46321 * 119.90812 * 120.01505 * 4 2 1 6 6 C 1.52621 * 110.49619 * 142.55284 * 5 4 2 7 7 H 1.08996 * 109.27306 * 171.62538 * 6 5 4 8 8 C 1.52995 * 109.27308 * 291.14063 * 6 5 4 9 9 N 1.46276 * 110.61884 * 51.16998 * 6 5 4 10 10 C 1.36126 * 119.87063 * 142.81708 * 9 6 5 11 11 H 1.07998 * 119.99958 * 140.64146 * 10 9 6 12 12 C 1.39586 * 120.00068 * 320.64340 * 10 9 6 13 13 N 1.31013 * 119.99700 * 158.71297 * 12 10 9 14 14 Si 1.86796 * 119.99941 * 338.71319 * 12 10 9 15 15 H 1.48503 * 109.46821 * 95.50701 * 14 12 10 16 16 H 1.48504 * 109.47152 * 215.50389 * 14 12 10 17 17 H 1.48491 * 109.47349 * 335.50439 * 14 12 10 18 18 C 1.34789 * 120.22455 * 323.05199 * 9 6 5 19 19 O 1.21493 * 120.42456 * 185.71102 * 18 9 6 20 20 C 1.34784 * 119.90407 * 299.99862 * 4 2 1 21 21 O 1.21435 * 120.42586 * 5.96626 * 20 4 2 22 22 H 1.09000 * 109.46643 * 300.00063 * 1 2 3 23 23 H 1.09000 * 109.47080 * 59.99346 * 1 2 3 24 24 H 1.09000 * 109.47596 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47096 * 239.99732 * 2 1 3 26 26 H 1.09007 * 109.47379 * 300.00059 * 3 2 1 27 27 H 1.09000 * 109.47225 * 60.00293 * 3 2 1 28 28 H 1.09003 * 109.47168 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.27493 * 262.81499 * 5 4 2 30 30 H 1.09002 * 109.27345 * 22.33410 * 5 4 2 31 31 H 1.09002 * 109.47368 * 60.00111 * 8 6 5 32 32 H 1.09000 * 109.47095 * 179.97438 * 8 6 5 33 33 H 1.09004 * 109.47035 * 299.99293 * 8 6 5 34 34 H 0.97002 * 119.99891 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8597 -1.8800 1.0595 6 6 3.9377 -1.8990 2.1397 7 1 4.4557 -2.8577 2.1142 8 6 4.9411 -0.7756 1.8716 9 7 3.3449 -1.7031 3.4625 10 6 3.8424 -2.3777 4.5351 11 1 3.9287 -1.8833 5.4914 12 6 4.2410 -3.7085 4.3990 13 7 5.0802 -4.2320 5.2581 14 14 3.5780 -4.7428 2.9919 15 1 4.5429 -4.7199 1.8633 16 1 3.3882 -6.1418 3.4526 17 1 2.2760 -4.1891 2.5412 18 6 2.3049 -0.8606 3.6219 19 8 1.8761 -0.6156 4.7320 20 6 1.6916 -0.2286 2.4194 21 8 0.9079 0.6911 2.5403 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4423 -0.0005 29 1 2.2402 -2.7718 1.1538 30 1 3.3346 -1.8739 0.0783 31 1 4.4249 0.1843 1.8879 32 1 5.7124 -0.7859 2.6418 33 1 5.4008 -0.9245 0.8946 34 1 5.3576 -5.1567 5.1633 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:21 Heat of formation + Delta-G solvation = -69.924543 kcal Electronic energy + Delta-G solvation = -18653.110850 eV Core-core repulsion = 15779.024342 eV Total energy + Delta-G solvation = -2874.086508 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.23670 -39.64836 -38.53720 -36.39823 -34.88270 -33.19786 -31.88527 -28.38480 -28.02359 -27.38313 -24.86902 -23.83239 -22.09701 -19.97725 -19.06964 -18.27043 -18.04504 -17.21103 -16.63008 -15.95596 -15.83630 -15.68834 -15.14773 -14.90141 -14.56302 -14.49522 -14.13252 -13.86546 -13.38446 -13.13183 -13.07920 -12.82361 -12.74214 -12.60110 -12.37916 -12.12278 -12.00637 -11.80194 -11.60995 -11.06839 -10.23914 -10.02065 -9.73307 -8.62586 -6.27094 0.48999 1.17709 1.35209 1.44826 1.70049 2.11049 2.24263 2.34550 2.88443 3.39958 3.58427 3.95566 4.00758 4.12730 4.20684 4.29299 4.49051 4.63151 4.71775 4.81213 4.83686 4.88173 4.90842 4.98981 5.21200 5.26517 5.40819 5.41995 5.61676 5.89519 6.00567 6.36028 6.63406 6.87325 7.04427 7.58859 8.52921 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.031355 B = 0.010042 C = 0.009233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.775759 B = 2787.610139 C = 3031.864574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 C -0.166 4.166 4 N -0.586 5.586 5 C 0.089 3.911 6 C 0.083 3.917 7 H 0.105 0.895 8 C -0.148 4.148 9 N -0.429 5.429 10 C -0.356 4.356 11 H 0.043 0.957 12 C 0.024 3.976 13 N -0.887 5.887 14 Si 0.935 3.065 15 H -0.210 1.210 16 H -0.284 1.284 17 H -0.249 1.249 18 C 0.421 3.579 19 O -0.593 6.593 20 C 0.522 3.478 21 O -0.535 6.535 22 H 0.041 0.959 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.140 0.860 26 H 0.094 0.906 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 1.250 -20.622 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 C -0.224 4.224 4 N -0.323 5.323 5 C -0.033 4.033 6 C -0.019 4.019 7 H 0.123 0.877 8 C -0.206 4.206 9 N -0.152 5.152 10 C -0.484 4.484 11 H 0.061 0.939 12 C -0.182 4.182 13 N -0.522 5.522 14 Si 0.755 3.245 15 H -0.134 1.134 16 H -0.210 1.210 17 H -0.173 1.173 18 C 0.207 3.793 19 O -0.476 6.476 20 C 0.305 3.695 21 O -0.411 6.411 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.158 0.842 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.182 0.818 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.250 1.721 -19.949 20.062 hybrid contribution -0.156 -0.456 1.075 1.177 sum -1.405 1.265 -18.875 18.969 Atomic orbital electron populations 1.22227 0.95178 1.02262 1.03154 1.21554 0.94746 0.93833 0.86412 1.22170 1.01669 0.95727 1.02798 1.48241 1.49862 1.29068 1.05102 1.22429 0.91794 0.87380 1.01678 1.22154 0.95611 1.02413 0.81732 0.87714 1.22119 0.98130 0.96557 1.03818 1.43742 1.25550 1.37397 1.08503 1.18643 1.43059 0.95685 0.90998 0.93902 1.26368 0.93733 0.96894 1.01199 1.69665 1.27303 1.16110 1.39139 0.86092 0.81358 0.77437 0.79647 1.13352 1.21009 1.17305 1.20781 0.82340 0.86282 0.89861 1.90598 1.64600 1.64938 1.27422 1.20181 0.81863 0.83178 0.84297 1.90610 1.34559 1.29708 1.86202 0.93970 0.88839 0.92597 0.84201 0.88704 0.94748 0.91603 0.90586 0.81850 0.93578 0.93552 0.86588 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 9.12 71.98 0.66 -3.23 16 2 C 0.14 2.83 3.27 44.99 0.15 2.98 16 3 C -0.17 -3.54 9.12 71.98 0.66 -2.88 16 4 N -0.59 -17.51 2.44 -800.99 -1.95 -19.46 16 5 C 0.09 2.24 5.72 86.29 0.49 2.73 16 6 C 0.08 2.86 1.90 44.91 0.09 2.94 16 7 H 0.11 3.51 3.82 -2.39 -0.01 3.50 16 8 C -0.15 -4.30 9.30 71.98 0.67 -3.63 16 9 N -0.43 -20.98 2.06 -616.34 -1.27 -22.25 16 10 C -0.36 -20.65 9.35 84.35 0.79 -19.86 16 11 H 0.04 2.98 7.90 -2.91 -0.02 2.95 16 12 C 0.02 1.28 5.25 85.14 0.45 1.73 16 13 N -0.89 -49.76 13.94 21.76 0.30 -49.46 16 14 Si 0.93 36.39 24.48 68.60 1.68 38.07 16 15 H -0.21 -6.35 6.73 99.48 0.67 -5.68 16 16 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.25 -9.41 5.87 99.48 0.58 -8.83 16 18 C 0.42 22.40 7.48 87.14 0.65 23.06 16 19 O -0.59 -38.00 16.88 11.40 0.19 -37.81 16 20 C 0.52 22.53 6.63 87.14 0.58 23.11 16 21 O -0.54 -25.42 13.29 11.58 0.15 -25.26 16 22 H 0.04 1.33 5.98 -2.39 -0.01 1.32 16 23 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.14 1.57 7.68 -2.39 -0.02 1.55 16 26 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.03 1.03 6.38 -2.39 -0.02 1.01 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.95 6.31 -2.39 -0.02 1.94 16 30 H 0.16 2.00 7.72 -2.39 -0.02 1.98 16 31 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.12 2.09 8.14 -2.38 -0.02 2.08 16 34 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 Total: -1.00 -81.09 270.43 5.22 -75.87 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.94 Total: 13.35 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 5.17 Total: 26.94 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.92 Total: -91.17 kcal Atomic # 8 Polarization: -63.42 SS G_CDS: 0.35 Total: -63.07 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 1.68 Total: 38.07 kcal Total: -81.09 5.22 -75.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.949 kcal (2) G-P(sol) polarization free energy of solvation -81.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds