Wall clock time and date at job start Mon Mar 30 2020 04:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47245 * 2 1 4 4 N 1.46497 * 109.47261 * 120.00117 * 2 1 3 5 5 C 1.46324 * 119.90897 * 119.99993 * 4 2 1 6 6 C 1.52616 * 110.50193 * 142.59728 * 5 4 2 7 7 H 1.09003 * 109.27029 * 291.10505 * 6 5 4 8 8 C 1.53003 * 109.24748 * 171.60856 * 6 5 4 9 9 N 1.46329 * 110.49724 * 51.36476 * 6 5 4 10 10 C 1.36113 * 119.90895 * 142.55590 * 9 6 5 11 11 H 1.07999 * 120.00236 * 40.49251 * 10 9 6 12 12 C 1.39586 * 120.00182 * 220.48464 * 10 9 6 13 13 N 1.31012 * 119.99708 * 18.32382 * 12 10 9 14 14 Si 1.86801 * 120.00277 * 198.04632 * 12 10 9 15 15 H 1.48497 * 109.46812 * 90.00335 * 14 12 10 16 16 H 1.48499 * 109.47086 * 210.00066 * 14 12 10 17 17 H 1.48496 * 109.47112 * 329.99862 * 14 12 10 18 18 C 1.34790 * 120.17924 * 322.83242 * 9 6 5 19 19 O 1.21503 * 120.42131 * 185.71263 * 18 9 6 20 20 C 1.34789 * 119.90950 * 300.02022 * 4 2 1 21 21 O 1.21439 * 120.42256 * 5.96940 * 20 4 2 22 22 H 1.09001 * 109.47679 * 59.99508 * 1 2 3 23 23 H 1.09004 * 109.47280 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46995 * 300.00229 * 1 2 3 25 25 H 1.09000 * 109.47407 * 240.00061 * 2 1 3 26 26 H 1.09003 * 109.47122 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47047 * 300.00031 * 3 2 1 28 28 H 1.08998 * 109.46688 * 60.00234 * 3 2 1 29 29 H 1.09005 * 109.27406 * 22.33432 * 5 4 2 30 30 H 1.09001 * 109.27166 * 262.85967 * 5 4 2 31 31 H 1.08997 * 109.47096 * 299.00734 * 8 6 5 32 32 H 1.09003 * 109.46699 * 59.00480 * 8 6 5 33 33 H 1.08997 * 109.46922 * 179.00673 * 8 6 5 34 34 H 0.97008 * 120.00544 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8594 -1.8801 1.0595 6 6 3.9368 -1.8999 2.1402 7 1 4.6524 -1.1001 1.9494 8 6 4.6629 -3.2462 2.1040 9 7 3.3399 -1.7086 3.4624 10 6 3.8320 -2.3883 4.5341 11 1 4.8983 -2.5157 4.6495 12 6 2.9587 -2.9207 5.4840 13 7 1.6938 -3.0908 5.1882 14 14 3.5950 -3.3978 7.1742 15 1 3.4866 -2.2342 8.0904 16 1 2.7876 -4.5244 7.7072 17 1 5.0165 -3.8141 7.0686 18 6 2.3004 -0.8652 3.6210 19 8 1.8679 -0.6237 4.7305 20 6 1.6912 -0.2288 2.4195 21 8 0.9072 0.6907 2.5403 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.3342 -1.8743 0.0783 30 1 2.2395 -2.7718 1.1533 31 1 3.9518 -4.0479 2.3031 32 1 5.1089 -3.3921 1.1202 33 1 5.4451 -3.2576 2.8630 34 1 1.0867 -3.4604 5.8484 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:25 Heat of formation + Delta-G solvation = -50.261211 kcal Electronic energy + Delta-G solvation = -18524.415897 eV Core-core repulsion = 15651.182055 eV Total energy + Delta-G solvation = -2873.233842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15834 -37.61382 -36.38847 -34.39305 -32.81908 -31.25436 -30.08019 -26.93194 -25.97704 -25.62142 -22.99260 -21.66819 -20.31019 -18.33298 -17.25363 -16.57972 -15.55730 -15.15780 -14.95222 -14.37177 -13.81543 -13.73860 -13.29541 -13.19430 -12.89974 -12.26995 -12.16135 -12.14784 -11.75152 -11.50109 -11.44166 -11.19782 -10.98158 -10.95679 -10.72863 -10.69877 -10.42555 -10.21260 -9.74181 -8.88251 -8.26185 -8.04261 -7.25550 -6.26661 -3.97458 2.70714 3.26941 3.33289 3.37586 3.38282 4.15101 4.60247 4.70978 5.03032 5.13041 5.27574 5.35262 5.42866 5.49217 5.64471 5.70483 5.81275 5.84259 5.96255 6.03364 6.13087 6.20253 6.31401 6.45854 6.55871 6.60458 6.90240 7.01898 7.47219 7.72441 8.09253 8.58141 8.84427 9.10528 9.43730 10.10049 10.81503 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035016 B = 0.008967 C = 0.007858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.451751 B = 3121.943208 C = 3562.379872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 C -0.167 4.167 4 N -0.612 5.612 5 C 0.106 3.894 6 C 0.115 3.885 7 H 0.058 0.942 8 C -0.132 4.132 9 N -0.429 5.429 10 C -0.346 4.346 11 H 0.087 0.913 12 C 0.068 3.932 13 N -0.820 5.820 14 Si 0.916 3.084 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.455 3.545 19 O -0.499 6.499 20 C 0.518 3.482 21 O -0.520 6.520 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 0.133 -11.806 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.039 3.961 3 C -0.225 4.225 4 N -0.350 5.350 5 C -0.018 4.018 6 C 0.010 3.990 7 H 0.076 0.924 8 C -0.190 4.190 9 N -0.155 5.155 10 C -0.473 4.473 11 H 0.104 0.896 12 C -0.145 4.145 13 N -0.453 5.453 14 Si 0.742 3.258 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.196 1.196 18 C 0.239 3.761 19 O -0.373 6.373 20 C 0.304 3.696 21 O -0.394 6.394 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.057 0.710 -11.081 11.517 hybrid contribution 0.153 -0.403 0.596 0.736 sum 3.210 0.307 -10.485 10.970 Atomic orbital electron populations 1.22237 0.95090 1.02188 1.03322 1.21006 0.94748 0.93208 0.87176 1.22177 1.00878 0.96350 1.03107 1.48340 1.51573 1.29288 1.05804 1.21929 0.92729 0.87771 0.99368 1.21348 0.93982 0.98551 0.85111 0.92426 1.21771 1.00931 0.96006 1.00322 1.43264 1.30554 1.36162 1.05515 1.18965 0.92456 1.34223 1.01687 0.89553 1.25348 0.94933 0.94278 0.99937 1.69665 1.04270 1.36669 1.34670 0.86151 0.78536 0.77923 0.83181 1.20136 1.21142 1.19583 1.19322 0.85720 0.82936 0.88162 1.90612 1.61469 1.60819 1.24390 1.21310 0.81097 0.83383 0.83832 1.90572 1.33357 1.29522 1.85940 0.92392 0.92875 0.89950 0.90100 0.92786 0.92088 0.90704 0.89913 0.91289 0.91466 0.93360 0.91114 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.12 37.15 0.34 -2.23 16 2 C 0.14 2.10 3.27 -67.93 -0.22 1.87 16 3 C -0.17 -2.37 9.12 37.16 0.34 -2.03 16 4 N -0.61 -11.28 2.76 -167.15 -0.46 -11.75 16 5 C 0.11 1.70 5.84 -4.33 -0.03 1.67 16 6 C 0.11 2.11 3.54 -68.22 -0.24 1.87 16 7 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 8 C -0.13 -2.09 8.34 37.16 0.31 -1.78 16 9 N -0.43 -10.59 2.84 -108.75 -0.31 -10.89 16 10 C -0.35 -9.06 7.82 -15.15 -0.12 -9.17 16 11 H 0.09 2.12 7.01 -52.49 -0.37 1.75 16 12 C 0.07 1.85 4.39 -17.40 -0.08 1.77 16 13 N -0.82 -23.96 11.54 55.53 0.64 -23.32 16 14 Si 0.92 21.27 29.59 -169.99 -5.03 16.24 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 C 0.45 12.52 6.72 -11.79 -0.08 12.44 16 19 O -0.50 -15.96 14.74 -10.43 -0.15 -16.11 16 20 C 0.52 12.37 6.98 -11.79 -0.08 12.29 16 21 O -0.52 -13.29 13.29 -10.38 -0.14 -13.43 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.53 5.98 -51.93 -0.31 1.22 16 25 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.30 6.38 -51.93 -0.33 0.97 16 29 H 0.08 0.97 7.74 -51.93 -0.40 0.57 16 30 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.17 6.86 -51.93 -0.36 0.81 16 34 H 0.27 7.57 8.30 -40.82 -0.34 7.23 16 LS Contribution 276.30 15.07 4.16 4.16 Total: -1.00 -33.93 276.30 -5.83 -39.76 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.68 Total: -1.36 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 0.14 Total: 16.70 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.13 Total: -45.96 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.29 Total: -29.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.93 -5.83 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.504 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds