Wall clock time and date at job start Mon Mar 30 2020 04:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47284 * 2 1 4 4 C 1.50696 * 109.47235 * 120.00492 * 2 1 3 5 5 H 1.08002 * 119.99865 * 119.99353 * 4 2 1 6 6 C 1.37872 * 120.00269 * 299.99561 * 4 2 1 7 7 N 1.31517 * 119.99679 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00435 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47055 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47277 * 119.99870 * 8 6 4 11 11 H 1.48494 * 109.47366 * 240.00193 * 8 6 4 12 12 N 1.46500 * 109.46478 * 240.00231 * 2 1 3 13 13 C 1.33661 * 118.57924 * 299.99855 * 12 2 1 14 14 O 1.21287 * 118.64538 * 0.10206 * 13 12 2 15 15 C 1.49910 * 122.71382 * 180.02562 * 13 12 2 16 16 N 1.45663 * 111.29567 * 19.69146 * 15 13 12 17 17 C 1.46500 * 118.57432 * 160.55539 * 16 15 13 18 18 C 1.33662 * 122.84748 * 340.53655 * 16 15 13 19 19 O 1.21283 * 118.64012 * 180.02562 * 18 16 15 20 20 C 1.45480 * 118.53048 * 120.23841 * 12 2 1 21 21 H 1.09003 * 109.21754 * 40.12346 * 20 12 2 22 22 C 1.53001 * 108.91336 * 281.11711 * 20 12 2 23 23 H 1.09001 * 109.46538 * 299.99965 * 1 2 3 24 24 H 1.08994 * 109.47105 * 59.99424 * 1 2 3 25 25 H 1.08992 * 109.47284 * 179.97438 * 1 2 3 26 26 H 0.97005 * 120.00014 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.11071 * 259.22752 * 15 13 12 28 28 H 1.08994 * 109.11634 * 140.16225 * 15 13 12 29 29 H 1.08997 * 109.47020 * 179.97438 * 17 16 15 30 30 H 1.09004 * 109.47240 * 299.98565 * 17 16 15 31 31 H 1.09002 * 109.46760 * 59.98452 * 17 16 15 32 32 H 1.08997 * 109.47650 * 298.20418 * 22 20 12 33 33 H 1.09007 * 109.46787 * 58.20664 * 22 20 12 34 34 H 1.09004 * 109.47398 * 178.20159 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6995 -0.2396 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1465 -2.2873 3.6035 10 1 3.1469 -0.1878 4.8164 11 1 1.1663 -1.5870 4.8159 12 7 2.0182 -0.6906 -1.1962 13 6 1.6780 -1.9701 -1.3795 14 8 0.9769 -2.5099 -0.5499 15 6 2.1257 -2.7652 -2.5689 16 7 3.2888 -2.1592 -3.2029 17 6 4.1174 -2.9865 -4.0833 18 6 3.6325 -0.8811 -3.0164 19 8 4.6167 -0.4552 -3.5830 20 6 2.8567 0.0454 -2.1299 21 1 3.5518 0.6719 -1.5709 22 6 1.9672 0.9378 -2.9979 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7084 1.1606 3.4845 27 1 1.3112 -2.8158 -3.2915 28 1 2.3799 -3.7753 -2.2479 29 1 4.9404 -2.3887 -4.4750 30 1 4.5167 -3.8298 -3.5198 31 1 3.5115 -3.3564 -4.9105 32 1 1.2797 0.3170 -3.5723 33 1 1.3989 1.6148 -2.3599 34 1 2.5893 1.5177 -3.6798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261039322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:54 Heat of formation + Delta-G solvation = -73.189314 kcal Electronic energy + Delta-G solvation = -18333.873223 eV Core-core repulsion = 15459.645144 eV Total energy + Delta-G solvation = -2874.228079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.19702 -40.15954 -37.34048 -36.71583 -35.21180 -32.49424 -30.82261 -29.19970 -27.79826 -27.24056 -24.62428 -24.01076 -21.75770 -19.67007 -18.62328 -18.27139 -17.73934 -17.25437 -16.78119 -15.97807 -15.66559 -15.49903 -15.18076 -14.81985 -14.53669 -14.36547 -13.74434 -13.41152 -13.31157 -13.26135 -13.08448 -12.97790 -12.69772 -12.62663 -12.44508 -12.22422 -12.11688 -11.46705 -10.97409 -10.67260 -10.35257 -9.86561 -9.49914 -8.13652 -6.22899 1.27147 1.36458 1.39112 1.49427 1.60162 1.92032 2.17849 2.44134 3.05076 3.15113 3.52006 3.99868 4.04036 4.26892 4.36821 4.47714 4.67702 4.70778 4.74832 4.79234 4.95716 4.98215 5.10364 5.17165 5.17997 5.24725 5.59049 5.82825 5.98378 6.06157 6.18167 6.68317 6.78431 6.86214 7.30849 7.47537 8.90682 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029898 B = 0.008240 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.285938 B = 3397.411165 C = 3586.551003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.033 0.967 4 C -0.513 4.513 5 H 0.037 0.963 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.281 1.281 12 N -0.590 5.590 13 C 0.488 3.512 14 O -0.557 6.557 15 C 0.110 3.890 16 N -0.604 5.604 17 C 0.070 3.930 18 C 0.521 3.479 19 O -0.567 6.567 20 C 0.123 3.877 21 H 0.105 0.895 22 C -0.145 4.145 23 H 0.065 0.935 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 -4.772 -13.401 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.172 3.828 3 H 0.051 0.949 4 C -0.552 4.552 5 H 0.056 0.944 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.207 1.207 12 N -0.323 5.323 13 C 0.276 3.724 14 O -0.435 6.435 15 C -0.015 4.015 16 N -0.337 5.337 17 C -0.071 4.071 18 C 0.309 3.691 19 O -0.446 6.446 20 C 0.016 3.984 21 H 0.123 0.877 22 C -0.204 4.204 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.612 -4.736 -13.133 14.203 hybrid contribution 0.179 -0.231 1.238 1.272 sum 2.791 -4.967 -11.895 13.189 Atomic orbital electron populations 1.21929 0.97522 1.00355 0.99981 1.18609 0.91799 0.91503 0.80891 0.94895 1.21402 1.30651 1.11561 0.91620 0.94438 1.25503 0.95523 0.95845 1.01336 1.69959 1.37566 1.23833 1.24122 0.85581 0.78092 0.78530 0.79834 1.20411 1.19974 1.20663 1.47878 1.49100 1.11616 1.23740 1.20560 0.81438 0.82329 0.88108 1.90743 1.39305 1.69035 1.44446 1.21610 0.89302 0.97965 0.92633 1.47315 1.28612 1.10336 1.47483 1.22013 0.96016 0.94841 0.94215 1.20030 0.84568 0.82967 0.81570 1.90681 1.27628 1.75412 1.50873 1.21038 0.93459 0.93481 0.90425 0.87708 1.22070 0.99486 0.99318 0.99478 0.91623 0.95121 0.94225 0.92716 0.85371 0.85212 0.90245 0.90276 0.88802 0.91301 0.90984 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 8.87 71.98 0.64 -6.21 16 2 C 0.27 13.49 2.43 44.25 0.11 13.59 16 3 H 0.03 1.70 7.82 -2.39 -0.02 1.68 16 4 C -0.51 -28.88 7.44 25.60 0.19 -28.69 16 5 H 0.04 2.21 7.40 -2.91 -0.02 2.19 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -52.13 11.32 21.45 0.24 -51.88 16 8 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 N -0.59 -23.89 2.37 -788.84 -1.87 -25.76 16 13 C 0.49 18.94 6.86 87.58 0.60 19.54 16 14 O -0.56 -26.61 13.61 -3.05 -0.04 -26.65 16 15 C 0.11 2.79 6.53 85.54 0.56 3.35 16 16 N -0.60 -15.53 3.21 -857.51 -2.76 -18.28 16 17 C 0.07 1.27 10.54 127.77 1.35 2.62 16 18 C 0.52 16.49 6.81 87.57 0.60 17.09 16 19 O -0.57 -20.09 16.07 -3.04 -0.05 -20.14 16 20 C 0.12 4.15 2.99 44.18 0.13 4.28 16 21 H 0.11 3.75 8.04 -2.39 -0.02 3.73 16 22 C -0.15 -3.95 9.33 71.98 0.67 -3.28 16 23 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 2.04 5.98 -2.39 -0.01 2.03 16 26 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 27 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.13 2.79 8.10 -2.39 -0.02 2.77 16 29 H 0.08 1.71 6.68 -2.39 -0.02 1.69 16 30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.07 8.06 -2.38 -0.02 2.05 16 34 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -69.52 279.85 3.94 -65.58 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.09 Total: 6.04 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 5.29 Total: 23.68 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -4.38 Total: -95.93 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.09 Total: -46.78 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.52 3.94 -65.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.607 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds