Wall clock time and date at job start Mon Mar 30 2020 03:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47137 * 2 1 4 4 C 1.53002 * 109.47148 * 119.99458 * 2 1 3 5 5 H 1.09006 * 109.26484 * 299.51240 * 4 2 1 6 6 C 1.52612 * 109.27190 * 180.02562 * 4 2 1 7 7 N 1.46325 * 110.49859 * 291.10273 * 6 4 2 8 8 C 1.36116 * 119.90814 * 142.57996 * 7 6 4 9 9 H 1.07998 * 120.00195 * 205.82989 * 8 7 6 10 10 C 1.39588 * 120.00349 * 25.82190 * 8 7 6 11 11 N 1.31011 * 119.99717 * 11.92316 * 10 8 7 12 12 Si 1.86801 * 120.00156 * 191.91590 * 10 8 7 13 13 H 1.48504 * 109.46908 * 90.00821 * 12 10 8 14 14 H 1.48501 * 109.47035 * 210.00064 * 12 10 8 15 15 H 1.48497 * 109.47509 * 330.00564 * 12 10 8 16 16 C 1.34786 * 120.18583 * 322.55222 * 7 6 4 17 17 O 1.21501 * 120.42853 * 186.01299 * 16 7 6 18 18 C 1.49044 * 119.14895 * 5.99752 * 16 7 6 19 19 O 1.21438 * 120.42388 * 191.77027 * 18 16 7 20 20 N 1.34808 * 119.15233 * 11.76142 * 18 16 7 21 21 C 1.46493 * 119.90440 * 185.99635 * 20 18 16 22 22 H 1.09003 * 109.47267 * 60.00453 * 1 2 3 23 23 H 1.09004 * 109.47383 * 300.00766 * 1 2 3 24 24 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47761 * 239.99634 * 2 1 3 26 26 H 1.09004 * 109.46420 * 299.99426 * 3 2 1 27 27 H 1.08994 * 109.47558 * 59.99489 * 3 2 1 28 28 H 1.08999 * 109.46897 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.27151 * 51.36808 * 6 4 2 30 30 H 1.09002 * 109.27063 * 170.87740 * 6 4 2 31 31 H 0.96994 * 120.00062 * 179.97438 * 11 10 8 32 32 H 1.09008 * 109.47255 * 269.95920 * 21 20 18 33 33 H 1.09002 * 109.47880 * 29.96182 * 21 20 18 34 34 H 1.08996 * 109.47312 * 149.96317 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6819 -0.1995 2.1370 6 6 3.5661 -0.7179 1.2450 7 7 4.0773 -1.5774 0.1769 8 6 5.1900 -1.2102 -0.5158 9 1 5.3418 -1.5686 -1.5232 10 6 6.1349 -0.3701 0.0758 11 7 6.0781 -0.1230 1.3611 12 14 7.4804 0.4016 -0.9652 13 1 7.0117 1.7096 -1.4896 14 1 8.6930 0.6078 -0.1332 15 1 7.8060 -0.4988 -2.1003 16 6 3.4498 -2.7321 -0.1227 17 8 3.9294 -3.5011 -0.9320 18 6 2.1602 -3.0537 0.5517 19 8 1.6829 -4.1671 0.4670 20 7 1.5304 -2.0928 1.2570 21 6 0.3332 -2.4230 2.0339 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5140 0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9562 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 3.9232 0.3001 1.0897 30 1 3.9293 -1.0839 2.2054 31 1 6.7349 0.4604 1.7723 32 1 -0.5518 -2.2910 1.4113 33 1 0.3911 -3.4589 2.3681 34 1 0.2693 -1.7648 2.9003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261041890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:49 Heat of formation + Delta-G solvation = -58.007583 kcal Electronic energy + Delta-G solvation = -18596.781206 eV Core-core repulsion = 15723.211456 eV Total energy + Delta-G solvation = -2873.569750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34632 -37.38412 -37.13540 -34.43567 -33.49491 -31.86067 -28.94468 -27.27446 -26.68457 -25.28044 -23.12368 -22.03406 -20.38316 -18.12455 -17.22115 -16.51224 -16.08414 -15.55259 -15.00997 -14.43209 -14.16880 -13.91399 -13.80171 -13.13549 -12.81690 -12.57246 -12.31984 -12.11548 -11.96646 -11.67715 -11.61201 -11.50633 -11.11104 -10.76119 -10.59270 -10.52208 -10.44856 -10.25384 -10.08590 -9.18260 -8.40308 -8.27027 -7.89463 -6.58282 -4.08887 2.44921 3.09893 3.15128 3.20189 3.35275 3.93829 4.25610 4.52044 4.91594 4.99280 5.14584 5.25153 5.33100 5.49163 5.65424 5.68091 5.82350 5.86103 5.94976 6.00458 6.07023 6.15153 6.33535 6.47378 6.56175 6.64768 6.80515 6.98595 7.33379 7.58140 7.91020 8.23695 8.53361 8.96876 9.12615 9.75165 10.45424 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.010317 C = 0.008491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.942367 B = 2713.430761 C = 3296.805955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.124 3.876 5 H 0.095 0.905 6 C 0.118 3.882 7 N -0.408 5.408 8 C -0.307 4.307 9 H 0.104 0.896 10 C 0.037 3.963 11 N -0.868 5.868 12 Si 0.929 3.071 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.422 3.578 17 O -0.551 6.551 18 C 0.516 3.484 19 O -0.525 6.525 20 N -0.608 5.608 21 C 0.084 3.916 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.275 0.725 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 7.425 3.270 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.020 3.980 5 H 0.113 0.887 6 C -0.006 4.006 7 N -0.129 5.129 8 C -0.436 4.436 9 H 0.121 0.879 10 C -0.169 4.169 11 N -0.506 5.506 12 Si 0.755 3.245 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.190 1.190 16 C 0.207 3.793 17 O -0.433 6.433 18 C 0.301 3.699 19 O -0.398 6.398 20 N -0.345 5.345 21 C -0.059 4.059 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.113 6.513 2.966 10.819 hybrid contribution 0.588 0.527 -0.163 0.807 sum -7.525 7.040 2.802 10.679 Atomic orbital electron populations 1.21880 0.95480 1.01647 1.01165 1.21528 0.95526 0.96885 0.98953 1.21863 1.02565 0.94708 1.01126 1.21851 0.96038 0.81354 0.98766 0.88712 1.21836 0.87650 0.99032 0.92103 1.43484 1.24136 1.14994 1.30316 1.19741 0.97854 1.27787 0.98193 0.87875 1.25514 0.98033 0.97740 0.95581 1.69756 1.36157 1.35162 1.09478 0.85867 0.79554 0.79385 0.79732 1.19962 1.20671 1.19010 1.19577 0.87256 0.83076 0.89426 1.90630 1.66910 1.48260 1.37458 1.21023 0.85749 0.84506 0.78618 1.90649 1.66523 1.22355 1.60304 1.48165 1.28446 1.09306 1.48590 1.21680 0.87215 1.01966 0.94997 0.92997 0.92987 0.92578 0.90515 0.92851 0.92960 0.91004 0.86604 0.91261 0.91483 0.92940 0.91031 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.68 37.15 0.32 -1.52 16 2 C -0.11 -1.68 2.52 -90.62 -0.23 -1.91 16 3 C -0.14 -1.98 8.85 37.16 0.33 -1.66 16 4 C 0.12 2.03 2.20 -68.22 -0.15 1.88 16 5 H 0.09 1.25 7.79 -51.93 -0.40 0.85 16 6 C 0.12 2.40 4.09 -4.34 -0.02 2.38 16 7 N -0.41 -10.10 2.60 -115.85 -0.30 -10.40 16 8 C -0.31 -8.05 9.17 -15.15 -0.14 -8.19 16 9 H 0.10 2.85 7.54 -52.49 -0.40 2.45 16 10 C 0.04 0.91 5.03 -17.40 -0.09 0.82 16 11 N -0.87 -21.02 10.85 55.53 0.60 -20.41 16 12 Si 0.93 19.18 29.57 -169.99 -5.03 14.16 16 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 16 C 0.42 11.20 7.19 -11.77 -0.08 11.12 16 17 O -0.55 -16.79 16.79 -10.43 -0.18 -16.96 16 18 C 0.52 12.07 7.52 -11.76 -0.09 11.98 16 19 O -0.52 -13.48 16.66 -10.37 -0.17 -13.65 16 20 N -0.61 -10.97 2.35 -174.94 -0.41 -11.38 16 21 C 0.08 1.17 9.68 59.84 0.58 1.75 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.77 5.80 -51.93 -0.30 0.47 16 25 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.14 6.23 -51.93 -0.32 0.81 16 29 H 0.12 2.36 4.43 -51.93 -0.23 2.13 16 30 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 31 H 0.27 6.25 8.30 -40.82 -0.34 5.91 16 32 H 0.05 0.67 6.64 -51.92 -0.34 0.32 16 33 H 0.07 1.07 7.52 -51.93 -0.39 0.68 16 34 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -31.34 275.23 -5.33 -36.67 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.43 Total: 1.18 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 0.44 Total: 16.65 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.11 Total: -42.19 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.35 Total: -30.61 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.34 -5.33 -36.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.340 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds