Wall clock time and date at job start Mon Mar 30 2020 04:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47461 * 2 1 4 4 C 1.45661 * 118.57878 * 89.99682 * 3 2 1 5 5 C 1.49900 * 111.29890 * 199.44633 * 4 3 2 6 6 O 1.21282 * 118.64667 * 160.28602 * 5 4 3 7 7 N 1.33661 * 122.71167 * 340.56506 * 5 4 3 8 8 C 1.46509 * 118.57685 * 179.66224 * 7 5 4 9 9 C 1.50696 * 109.47287 * 275.38185 * 8 7 5 10 10 H 1.08003 * 119.99585 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00091 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00027 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99999 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47449 * 59.99623 * 13 11 9 15 15 H 1.48503 * 109.47221 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47154 * 299.99433 * 13 11 9 17 17 C 1.45657 * 122.84595 * 359.40736 * 7 5 4 18 18 H 1.09003 * 109.30885 * 259.37093 * 17 7 5 19 19 C 1.53004 * 108.93716 * 140.23968 * 17 7 5 20 20 C 1.33661 * 118.57569 * 269.97741 * 3 2 1 21 21 O 1.21277 * 118.64547 * 359.96828 * 20 3 2 22 22 H 1.09000 * 109.47219 * 300.00159 * 1 2 3 23 23 H 1.09002 * 109.47054 * 59.99986 * 1 2 3 24 24 H 1.08995 * 109.47449 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46713 * 239.99358 * 2 1 3 26 26 H 1.08998 * 109.46578 * 119.99998 * 2 1 3 27 27 H 1.09000 * 109.11003 * 78.97631 * 4 3 2 28 28 H 1.08998 * 109.06326 * 319.88538 * 4 3 2 29 29 H 1.08994 * 109.46612 * 35.38070 * 8 7 5 30 30 H 1.09001 * 109.47027 * 155.38200 * 8 7 5 31 31 H 0.96996 * 120.00154 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.46777 * 303.97802 * 19 17 7 33 33 H 1.08987 * 109.47582 * 63.98411 * 19 17 7 34 34 H 1.09005 * 109.46688 * 183.98979 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2507 2.0381 1.2791 5 6 2.2847 3.5290 1.1273 6 8 2.1063 4.2177 2.1095 7 7 2.4982 4.1307 -0.0470 8 6 2.5054 5.5951 -0.0929 9 6 1.0924 6.1003 -0.2312 10 1 0.2711 5.4006 -0.2804 11 6 0.8481 7.4556 -0.2960 12 7 1.8482 8.3076 -0.2366 13 14 -0.9035 8.0819 -0.4666 14 1 -1.7071 7.6277 0.6965 15 1 -0.8961 9.5662 -0.5133 16 1 -1.4996 7.5498 -1.7183 17 6 2.7293 3.3937 -1.2819 18 1 3.7974 3.3798 -1.4988 19 6 1.9953 4.0977 -2.4250 20 6 2.2320 1.9837 -1.1738 21 8 2.0141 1.3643 -2.1935 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2030 1.6989 1.6868 28 1 1.4509 1.7676 1.9686 29 1 2.9424 5.9852 0.8262 30 1 3.0957 5.9289 -0.9463 31 1 1.6764 9.2611 -0.2825 32 1 0.9381 4.1895 -2.1759 33 1 2.4210 5.0899 -2.5737 34 1 2.1037 3.5148 -3.3398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:19 Heat of formation + Delta-G solvation = -60.271201 kcal Electronic energy + Delta-G solvation = -18129.190973 eV Core-core repulsion = 15255.523065 eV Total energy + Delta-G solvation = -2873.667908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82071 -38.58264 -36.17253 -35.36545 -32.82758 -31.30978 -30.09593 -27.97249 -27.12062 -24.53749 -22.71328 -22.43590 -20.52968 -18.18426 -17.18406 -16.87678 -16.61122 -15.93257 -15.04832 -14.39793 -14.27506 -14.15258 -13.84454 -13.59330 -13.19414 -12.78691 -12.54818 -12.16083 -12.02519 -11.88389 -11.60811 -11.30845 -11.11765 -11.02575 -10.90710 -10.50739 -10.18675 -9.84390 -9.58334 -9.19303 -8.72181 -8.45481 -7.89518 -6.07734 -4.11194 2.59440 2.84056 3.25107 3.31499 3.35551 3.39759 3.68728 4.37140 4.43452 4.80497 4.99737 5.13114 5.26755 5.32282 5.34598 5.37290 5.47368 5.56734 5.63858 5.88472 6.15080 6.26553 6.36623 6.40423 6.81308 6.90132 7.28537 7.29801 7.40140 7.87602 8.09145 8.16088 8.24826 8.75328 8.92472 9.52834 11.00904 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.007771 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.809940 B = 3602.385333 C = 3694.908648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.606 5.606 4 C 0.099 3.901 5 C 0.498 3.502 6 O -0.529 6.529 7 N -0.587 5.587 8 C 0.243 3.757 9 C -0.520 4.520 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.133 3.867 18 H 0.096 0.904 19 C -0.140 4.140 20 C 0.518 3.482 21 O -0.539 6.539 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -14.065 -0.409 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 N -0.341 5.341 4 C -0.027 4.027 5 C 0.283 3.717 6 O -0.406 6.406 7 N -0.320 5.320 8 C 0.125 3.875 9 C -0.558 4.558 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.025 3.975 18 H 0.113 0.887 19 C -0.198 4.198 20 C 0.305 3.695 21 O -0.415 6.415 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.430 -13.804 -0.434 13.885 hybrid contribution -0.974 0.397 0.045 1.052 sum 0.456 -13.408 -0.389 13.421 Atomic orbital electron populations 1.22115 0.95693 1.02068 1.02794 1.21488 0.94761 0.82061 1.03271 1.47465 1.65993 1.14776 1.05888 1.21564 1.04034 0.90851 0.86220 1.19681 0.78729 0.89110 0.84183 1.90769 1.49217 1.63889 1.36689 1.47869 1.68519 1.10379 1.05260 1.19400 0.97987 0.71356 0.98760 1.21274 0.92348 0.91686 1.50525 0.92595 1.24888 0.97284 0.96628 0.95126 1.69908 1.30770 1.02478 1.50205 0.86584 0.84741 0.77601 0.78684 1.20229 1.21165 1.20205 1.20810 1.00957 0.87538 0.88176 0.88676 1.21978 1.01921 1.00882 0.95048 1.20356 0.77127 0.88973 0.83013 1.90679 1.51781 1.64949 1.34107 0.92434 0.92004 0.91607 0.89394 0.90447 0.88862 0.87541 0.93618 0.94321 0.92623 0.91075 0.89858 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.23 37.16 0.38 -1.49 16 2 C 0.11 1.19 5.98 -4.04 -0.02 1.17 16 3 N -0.61 -8.64 2.81 -176.87 -0.50 -9.14 16 4 C 0.10 1.40 6.46 -6.03 -0.04 1.36 16 5 C 0.50 9.95 7.52 -11.87 -0.09 9.86 16 6 O -0.53 -12.81 16.40 5.56 0.09 -12.72 16 7 N -0.59 -12.12 2.72 -170.52 -0.46 -12.58 16 8 C 0.24 6.07 4.29 -5.19 -0.02 6.05 16 9 C -0.52 -14.21 8.16 -34.44 -0.28 -14.49 16 10 H 0.06 1.56 7.68 -52.48 -0.40 1.15 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.13 2.32 3.55 -69.92 -0.25 2.07 16 18 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 19 C -0.14 -2.53 7.89 37.16 0.29 -2.23 16 20 C 0.52 8.64 7.17 -11.87 -0.09 8.56 16 21 O -0.54 -9.83 15.35 5.56 0.09 -9.75 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.04 7.24 -51.93 -0.38 0.66 16 26 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.11 1.34 8.10 -51.93 -0.42 0.92 16 29 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.04 0.96 6.80 -51.93 -0.35 0.61 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 33 H 0.08 1.57 6.70 -51.94 -0.35 1.22 16 34 H 0.07 1.09 7.59 -51.93 -0.39 0.69 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -32.24 284.30 -5.74 -37.98 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.74 Total: -2.07 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.21 Total: 12.50 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.22 Total: -46.87 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.18 Total: -22.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.24 -5.74 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.296 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds