Wall clock time and date at job start Mon Mar 30 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46919 * 2 1 4 4 C 1.50696 * 109.46730 * 120.00244 * 2 1 3 5 5 H 1.07997 * 120.00194 * 120.00382 * 4 2 1 6 6 C 1.37882 * 119.99954 * 299.99677 * 4 2 1 7 7 N 1.31520 * 119.99751 * 180.02562 * 6 4 2 8 8 Si 1.86790 * 119.99982 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47427 * 90.00106 * 8 6 4 10 10 H 1.48504 * 109.46991 * 209.99934 * 8 6 4 11 11 H 1.48499 * 109.47401 * 329.99602 * 8 6 4 12 12 N 1.46495 * 109.46871 * 240.00137 * 2 1 3 13 13 C 1.44652 * 114.23783 * 306.19481 * 12 2 1 14 14 C 1.49131 * 114.39150 * 182.11593 * 13 12 2 15 15 O 1.21282 * 114.93453 * 182.33601 * 14 13 12 16 16 N 1.26317 * 130.13102 * 2.35430 * 14 13 12 17 17 C 1.46509 * 109.90264 * 197.81056 * 16 14 13 18 18 C 1.45010 * 140.19544 * 17.78490 * 16 14 13 19 19 C 1.53591 * 109.18106 * 307.98777 * 18 16 14 20 20 C 1.26321 * 114.23409 * 125.95544 * 12 2 1 21 21 O 1.21272 * 110.52852 * 16.13037 * 20 12 2 22 22 H 1.09008 * 109.46626 * 67.93329 * 1 2 3 23 23 H 1.08993 * 109.47264 * 187.93352 * 1 2 3 24 24 H 1.09005 * 109.46752 * 307.93806 * 1 2 3 25 25 H 0.97000 * 119.99735 * 180.02562 * 7 6 4 26 26 H 1.09000 * 108.49903 * 303.38365 * 13 12 2 27 27 H 1.08997 * 108.50427 * 60.99835 * 13 12 2 28 28 H 1.08998 * 109.47024 * 59.54299 * 17 16 14 29 29 H 1.08997 * 109.47276 * 179.54825 * 17 16 14 30 30 H 1.08999 * 109.46805 * 299.54258 * 17 16 14 31 31 H 1.08992 * 109.52080 * 67.90721 * 18 16 14 32 32 H 1.09010 * 109.51851 * 188.02127 * 18 16 14 33 33 H 1.09000 * 109.53411 * 176.12518 * 19 18 16 34 34 H 1.09002 * 109.53351 * 296.28073 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8592 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9760 1.9950 3.9068 11 1 0.8472 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.4819 -2.0222 -1.3737 14 6 2.0143 -2.7471 -2.5631 15 8 1.5383 -3.8474 -2.7466 16 7 2.8836 -2.3951 -3.4093 17 6 2.7765 -3.2275 -4.6102 18 6 3.9534 -1.4297 -3.5717 19 6 3.4157 -0.0242 -3.2648 20 6 2.8288 -0.0148 -1.8905 21 8 3.2588 0.9216 -1.2509 22 1 -0.3633 0.3861 -0.9525 23 1 -0.3633 -1.0178 0.1418 24 1 -0.3633 0.6319 0.8105 25 1 1.9033 -0.5280 4.4376 26 1 1.7075 -2.6076 -0.4823 27 1 0.3989 -1.9485 -1.4725 28 1 1.7811 -3.1179 -5.0406 29 1 3.5239 -2.9127 -5.3384 30 1 2.9448 -4.2712 -4.3449 31 1 4.7655 -1.6671 -2.8846 32 1 4.3222 -1.4637 -4.5970 33 1 4.2308 0.6975 -3.3179 34 1 2.6477 0.2391 -3.9922 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:19 Heat of formation + Delta-G solvation = 15.551957 kcal Electronic energy + Delta-G solvation = -18343.599465 eV Core-core repulsion = 15473.219495 eV Total energy + Delta-G solvation = -2870.379969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.58946 -39.98774 -36.43329 -35.26967 -32.84159 -31.47546 -30.34332 -28.37979 -26.13185 -25.33101 -24.93321 -21.48239 -19.88258 -18.74481 -17.54470 -16.72677 -16.42183 -15.85065 -15.42296 -15.21778 -14.84220 -14.18940 -13.93704 -13.48740 -13.09360 -12.67862 -12.54357 -12.30424 -12.20481 -12.05207 -11.73294 -11.38811 -11.30810 -11.14197 -10.69339 -10.22218 -9.67956 -9.61169 -9.42870 -8.96465 -8.71262 -8.43283 -7.96848 -6.11908 -4.11454 2.70767 3.00605 3.24476 3.31353 3.37956 3.39836 3.57668 4.37439 4.49412 4.60036 4.84929 5.03776 5.15696 5.22615 5.34011 5.44917 5.60610 5.73827 5.75099 5.84126 5.98442 6.10568 6.15955 6.22674 6.38911 6.74083 7.07670 7.30088 7.63551 7.65546 8.10377 8.26067 8.50762 8.87161 8.97080 9.48180 11.01022 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.008264 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.324747 B = 3387.480630 C = 3708.270355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.206 3.794 3 H 0.090 0.910 4 C -0.520 4.520 5 H 0.076 0.924 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.544 5.544 13 C 0.096 3.904 14 C 0.522 3.478 15 O -0.569 6.569 16 N -0.587 5.587 17 C 0.054 3.946 18 C 0.117 3.883 19 C -0.124 4.124 20 C 0.476 3.524 21 O -0.583 6.583 22 H 0.034 0.966 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -0.618 -16.395 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.106 3.894 3 H 0.108 0.892 4 C -0.559 4.559 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.272 5.272 13 C -0.030 4.030 14 C 0.310 3.690 15 O -0.451 6.451 16 N -0.316 5.316 17 C -0.089 4.089 18 C -0.006 4.006 19 C -0.165 4.165 20 C 0.262 3.738 21 O -0.467 6.467 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.140 0.860 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.628 -0.677 -15.882 15.908 hybrid contribution -0.636 0.689 0.254 0.972 sum -0.008 0.012 -15.627 15.627 Atomic orbital electron populations 1.22593 0.99220 1.01617 0.99254 1.19772 0.89327 0.97683 0.82667 0.89223 1.21006 1.32638 1.13791 0.88415 0.90591 1.24836 0.95727 0.96538 0.95572 1.69879 1.45216 1.40251 0.97958 0.86891 0.80323 0.83898 0.77404 1.20481 1.22129 1.18859 1.45249 1.42461 1.14320 1.25137 1.21182 0.99987 0.84389 0.97404 1.18044 0.79729 0.87289 0.83982 1.90796 1.59939 1.19710 1.74615 1.45566 1.32772 1.35073 1.18160 1.22162 1.02164 0.97851 0.86734 1.21785 0.88519 0.86890 1.03364 1.22128 1.02427 0.98124 0.93806 1.18190 0.81399 0.84923 0.89295 1.90775 1.55563 1.35775 1.64554 0.94726 0.92253 0.92890 0.92456 0.86025 0.87918 0.91923 0.91154 0.90903 0.90208 0.87878 0.86534 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 7.86 37.16 0.29 -3.27 16 2 C 0.21 4.95 1.63 -69.08 -0.11 4.83 16 3 H 0.09 2.39 5.11 -51.93 -0.27 2.13 16 4 C -0.52 -14.53 8.61 -34.44 -0.30 -14.83 16 5 H 0.08 2.30 7.42 -52.49 -0.39 1.91 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 8 Si 0.88 21.94 24.29 -169.99 -4.13 17.81 16 9 H -0.28 -6.57 6.94 56.52 0.39 -6.18 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.41 6.52 56.52 0.37 -6.04 16 12 N -0.54 -11.10 2.59 -175.81 -0.46 -11.56 16 13 C 0.10 1.76 5.28 -6.93 -0.04 1.72 16 14 C 0.52 8.64 7.35 -15.30 -0.11 8.53 16 15 O -0.57 -10.62 15.18 5.56 0.08 -10.53 16 16 N -0.59 -7.72 2.93 -187.20 -0.55 -8.27 16 17 C 0.05 0.56 8.99 59.85 0.54 1.10 16 18 C 0.12 1.21 6.35 -4.53 -0.03 1.18 16 19 C -0.12 -1.55 6.09 -28.18 -0.17 -1.73 16 20 C 0.48 9.12 7.05 -15.15 -0.11 9.02 16 21 O -0.58 -13.84 14.19 5.56 0.08 -13.76 16 22 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.06 1.19 7.06 -51.93 -0.37 0.82 16 24 H 0.05 1.16 3.53 -51.93 -0.18 0.98 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.12 2.47 6.91 -51.93 -0.36 2.11 16 27 H 0.10 1.74 6.66 -51.93 -0.35 1.40 16 28 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 29 H 0.07 0.47 6.74 -51.93 -0.35 0.12 16 30 H 0.07 0.86 7.37 -51.93 -0.38 0.48 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.63 6.74 -51.92 -0.35 0.28 16 33 H 0.12 1.33 7.89 -51.93 -0.41 0.92 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -34.87 264.59 -4.61 -39.48 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.27 Total: 0.71 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.13 Total: 8.65 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.23 Total: -46.33 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.16 Total: -24.30 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.13 Total: 17.81 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.87 -4.61 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.029 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds