Wall clock time and date at job start Mon Mar 30 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47043 * 2 1 4 4 C 1.52996 * 109.47297 * 119.99945 * 2 1 3 5 5 C 1.53005 * 109.46914 * 64.66977 * 4 2 1 6 6 H 1.08994 * 110.53654 * 305.09185 * 5 4 2 7 7 C 1.51579 * 110.59769 * 182.25605 * 5 4 2 8 8 O 1.21228 * 127.15792 * 61.43705 * 7 5 4 9 9 N 1.35124 * 105.50811 * 241.52193 * 7 5 4 10 10 C 1.33793 * 111.68193 * 359.87175 * 9 7 5 11 11 O 1.21541 * 123.76962 * 180.09256 * 10 9 7 12 12 N 1.34527 * 112.46253 * 0.08250 * 10 9 7 13 13 C 1.46492 * 126.69279 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47581 * 276.39100 * 13 12 10 15 15 H 1.08004 * 120.00063 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00485 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99724 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00331 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46983 * 120.00221 * 18 16 14 21 21 H 1.48501 * 109.47462 * 240.00086 * 18 16 14 22 22 H 1.08998 * 109.47144 * 59.99660 * 1 2 3 23 23 H 1.08997 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47126 * 299.99759 * 1 2 3 25 25 H 1.08998 * 109.47190 * 240.00712 * 2 1 3 26 26 H 1.08998 * 109.46546 * 60.00318 * 3 2 1 27 27 H 1.08998 * 109.46810 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47429 * 300.00166 * 3 2 1 29 29 H 1.09000 * 109.47499 * 184.66686 * 4 2 1 30 30 H 1.08996 * 109.47379 * 304.67046 * 4 2 1 31 31 H 0.97001 * 124.13860 * 179.97438 * 9 7 5 32 32 H 1.09000 * 109.46969 * 36.39283 * 13 12 10 33 33 H 1.09004 * 109.47257 * 156.39009 * 13 12 10 34 34 H 0.97003 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6281 -2.1937 1.1918 6 1 0.5502 -2.2843 1.0581 7 6 2.0732 -2.9211 2.4450 8 8 1.7345 -2.6891 3.5856 9 7 2.9270 -3.8794 2.0225 10 6 3.0763 -3.8572 0.6931 11 8 3.7926 -4.6248 0.0808 12 7 2.3449 -2.8905 0.1097 13 6 2.2753 -2.5891 -1.3221 14 6 3.4327 -1.7037 -1.7060 15 1 4.1484 -1.3959 -0.9581 16 6 3.5781 -1.2866 -3.0121 17 7 2.7063 -1.6610 -3.9229 18 14 5.0124 -0.1885 -3.4878 19 1 5.8431 0.0881 -2.2884 20 1 5.8390 -0.8713 -4.5152 21 1 4.4956 1.0903 -4.0382 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9565 -0.8899 29 1 3.1268 -0.6494 1.2920 30 1 1.6100 -0.2580 2.1372 31 1 3.3751 -4.5071 2.6108 32 1 2.3234 -3.5173 -1.8916 33 1 1.3381 -2.0771 -1.5406 34 1 2.8083 -1.3672 -4.8417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261056899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:06 Heat of formation + Delta-G solvation = -59.368800 kcal Electronic energy + Delta-G solvation = -18284.281318 eV Core-core repulsion = 15410.652541 eV Total energy + Delta-G solvation = -2873.628777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77238 -38.13378 -36.83719 -35.05666 -33.82811 -32.52145 -29.58360 -27.31399 -26.73790 -24.41152 -23.48492 -21.16330 -20.32796 -19.50168 -17.64792 -16.89344 -16.18666 -15.64068 -15.26515 -14.86612 -14.59175 -14.01632 -13.74564 -13.60048 -13.36438 -12.72795 -12.37389 -12.23215 -11.78404 -11.56984 -11.33655 -11.09773 -10.91620 -10.72514 -10.38824 -10.28009 -10.18072 -9.93254 -9.75688 -9.57668 -9.44700 -8.59480 -8.03096 -6.21413 -4.25334 1.98897 2.93594 3.21957 3.31112 3.34546 3.62872 3.68367 4.32740 4.49151 5.08323 5.13298 5.20179 5.47598 5.53535 5.80711 5.82863 6.04079 6.06108 6.25382 6.29394 6.31984 6.37898 6.39593 6.70824 6.79068 6.95353 7.14075 7.28756 7.39741 7.70710 7.77923 7.91526 8.02404 8.70503 8.87991 9.39250 10.85787 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021435 B = 0.010475 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.967353 B = 2672.349679 C = 3422.093816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C -0.135 4.135 4 C -0.098 4.098 5 C 0.088 3.912 6 H 0.120 0.880 7 C 0.528 3.472 8 O -0.490 6.490 9 N -0.687 5.687 10 C 0.688 3.312 11 O -0.548 6.548 12 N -0.593 5.593 13 C 0.274 3.726 14 C -0.528 4.528 15 H 0.063 0.937 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.142 0.858 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.422 0.578 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 2.550 8.164 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.192 4.192 4 C -0.136 4.136 5 C -0.020 4.020 6 H 0.137 0.863 7 C 0.315 3.685 8 O -0.362 6.362 9 N -0.357 5.357 10 C 0.389 3.611 11 O -0.422 6.422 12 N -0.331 5.331 13 C 0.157 3.843 14 C -0.567 4.567 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.159 0.841 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.783 2.399 7.985 9.156 hybrid contribution 1.003 0.289 0.002 1.044 sum -2.780 2.688 7.988 8.875 Atomic orbital electron populations 1.21868 0.96342 1.01016 1.00907 1.21777 0.94875 0.96744 1.01450 1.21680 1.00985 0.96154 1.00411 1.21665 1.01959 0.90509 0.99471 1.22146 0.99758 0.95202 0.84856 0.86299 1.21135 0.77374 0.79687 0.90353 1.90759 1.57402 1.67286 1.20723 1.44569 1.45630 1.35211 1.10246 1.16021 0.81635 0.82991 0.80497 1.90964 1.41660 1.44271 1.65299 1.48394 1.44700 1.31328 1.08661 1.19389 0.98129 0.97413 0.69389 1.21388 1.10581 1.30252 0.94431 0.91869 1.24885 0.96358 0.96338 0.96047 1.69918 1.35450 1.44704 1.02590 0.86472 0.82378 0.80133 0.78752 1.19610 1.20835 1.20780 0.92795 0.93152 0.93729 0.84103 0.94112 0.92901 0.92956 0.91082 0.91084 0.73733 0.93753 0.93175 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.96 37.16 0.33 -1.71 16 2 C -0.13 -2.14 2.50 -90.62 -0.23 -2.37 16 3 C -0.13 -2.06 9.19 37.16 0.34 -1.71 16 4 C -0.10 -1.52 4.43 -26.73 -0.12 -1.64 16 5 C 0.09 1.42 3.32 -68.20 -0.23 1.20 16 6 H 0.12 1.71 6.41 -51.93 -0.33 1.37 16 7 C 0.53 8.39 8.17 -10.40 -0.08 8.31 16 8 O -0.49 -8.39 18.02 5.60 0.10 -8.29 16 9 N -0.69 -10.93 5.72 -15.71 -0.09 -11.02 16 10 C 0.69 13.83 8.68 -88.02 -0.76 13.07 16 11 O -0.55 -13.11 17.79 5.33 0.09 -13.01 16 12 N -0.59 -11.71 2.72 -173.78 -0.47 -12.18 16 13 C 0.27 6.31 4.83 -5.20 -0.03 6.28 16 14 C -0.53 -13.24 7.22 -34.44 -0.25 -13.49 16 15 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.87 13.29 55.43 0.74 -23.14 16 18 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.69 6.47 -51.93 -0.34 0.36 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.14 2.84 2.88 -51.93 -0.15 2.69 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.42 5.54 8.96 -40.82 -0.37 5.17 16 32 H 0.04 1.16 8.13 -51.93 -0.42 0.73 16 33 H 0.05 1.14 6.90 -51.93 -0.36 0.78 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -28.75 284.04 -5.96 -34.71 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.47 Total: 3.72 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -1.12 Total: 9.56 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.17 Total: -46.33 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.20 Total: -21.30 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.75 -5.96 -34.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261056899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.659 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds