Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 C 1.52997 * 109.47010 * 120.00362 * 2 1 3 5 5 C 1.52997 * 109.47520 * 65.68279 * 4 2 1 6 6 H 1.09001 * 110.65428 * 308.70082 * 5 4 2 7 7 C 1.51591 * 110.59753 * 71.61165 * 5 4 2 8 8 O 1.21226 * 127.15793 * 298.49112 * 7 5 4 9 9 N 1.34765 * 105.68167 * 118.53021 * 7 5 4 10 10 C 1.33801 * 111.64667 * 359.76341 * 9 7 5 11 11 O 1.21536 * 123.77041 * 180.24689 * 10 9 7 12 12 N 1.34524 * 112.45294 * 0.41519 * 10 9 7 13 13 C 1.46501 * 126.68484 * 179.87340 * 12 10 9 14 14 C 1.50705 * 109.46913 * 264.69453 * 13 12 10 15 15 H 1.07995 * 119.99983 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99692 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00429 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99872 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47310 * 59.99838 * 18 16 14 20 20 H 1.48497 * 109.47237 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46971 * 299.99946 * 18 16 14 22 22 H 1.09001 * 109.46952 * 294.82623 * 1 2 3 23 23 H 1.08997 * 109.47526 * 54.82949 * 1 2 3 24 24 H 1.08998 * 109.46954 * 174.83066 * 1 2 3 25 25 H 1.08998 * 109.47142 * 240.00514 * 2 1 3 26 26 H 1.08998 * 109.47038 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47536 * 300.00370 * 3 2 1 28 28 H 1.08998 * 109.46794 * 60.00301 * 3 2 1 29 29 H 1.08996 * 109.47213 * 305.67920 * 4 2 1 30 30 H 1.09004 * 109.47172 * 185.68143 * 4 2 1 31 31 H 0.97004 * 124.18169 * 180.02562 * 9 7 5 32 32 H 1.08992 * 109.47389 * 24.69827 * 13 12 10 33 33 H 1.09009 * 109.47320 * 144.70201 * 13 12 10 34 34 H 0.97003 * 120.00018 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6500 -2.1991 1.1798 6 1 0.5851 -2.3065 0.9731 7 6 2.4723 -2.9190 0.1293 8 8 2.5014 -2.6908 -1.0609 9 7 3.1637 -3.8658 0.7938 10 6 2.8992 -3.8413 2.1051 11 8 3.4058 -4.5971 2.9108 12 7 2.0071 -2.8888 2.4315 13 6 1.4953 -2.5912 3.7716 14 6 0.1897 -3.3137 3.9826 15 1 -0.2178 -3.9330 3.1973 16 6 -0.4844 -3.1841 5.1783 17 7 0.0121 -2.4304 6.1349 18 14 -2.1023 -4.0803 5.4402 19 1 -1.8850 -5.5433 5.3076 20 1 -2.6217 -3.7776 6.7980 21 1 -3.0869 -3.6319 4.4228 22 1 -0.3633 0.4315 0.9327 23 1 -0.3634 0.5919 -0.8400 24 1 -0.3633 -1.0235 -0.0926 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.5960 -0.2696 2.1362 30 1 3.1252 -0.6341 1.3015 31 1 3.7802 -4.4860 0.3738 32 1 2.2179 -2.9209 4.5180 33 1 1.3361 -1.5172 3.8696 34 1 -0.4624 -2.3390 6.9760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261056901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = -66.055690 kcal Electronic energy + Delta-G solvation = -17800.593765 eV Core-core repulsion = 14926.675023 eV Total energy + Delta-G solvation = -2873.918742 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.82129 -38.22085 -36.66690 -35.29185 -34.17979 -32.48223 -29.48415 -27.33410 -27.04390 -24.59643 -23.44621 -21.41824 -20.38636 -19.60651 -17.72042 -16.91145 -16.16496 -15.93926 -15.21728 -14.92828 -14.68784 -14.19361 -13.91468 -13.68094 -13.53497 -12.71696 -12.42817 -12.36415 -12.11898 -11.69821 -11.45270 -11.12489 -10.90560 -10.87955 -10.65125 -10.62477 -10.28124 -10.15270 -9.95710 -9.80827 -9.54018 -8.57272 -8.03697 -6.19129 -4.25646 1.98756 2.92461 3.25291 3.30187 3.32859 3.61218 3.64942 4.33744 4.45363 4.88357 4.99348 5.06503 5.15412 5.27038 5.57109 5.71412 5.77953 5.84241 5.90881 6.01106 6.08851 6.10601 6.24313 6.36405 6.45072 6.55955 7.00753 7.15224 7.30183 7.69952 7.79186 7.94654 8.01781 8.69346 8.85986 9.40867 10.88557 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.008356 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.203721 B = 3350.093138 C = 4082.902172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.143 4.143 4 C -0.107 4.107 5 C 0.090 3.910 6 H 0.126 0.874 7 C 0.527 3.473 8 O -0.487 6.487 9 N -0.685 5.685 10 C 0.687 3.313 11 O -0.551 6.551 12 N -0.593 5.593 13 C 0.276 3.724 14 C -0.540 4.540 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.423 0.577 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 5.277 -10.796 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.018 4.018 6 H 0.143 0.857 7 C 0.314 3.686 8 O -0.359 6.359 9 N -0.355 5.355 10 C 0.388 3.612 11 O -0.426 6.426 12 N -0.330 5.330 13 C 0.159 3.841 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.263 0.737 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.518 5.178 -10.562 12.030 hybrid contribution -0.643 -0.881 0.055 1.092 sum 1.875 4.297 -10.507 11.506 Atomic orbital electron populations 1.21883 0.94888 1.01953 1.01855 1.21203 0.96379 0.96229 0.98405 1.21795 1.00717 0.95865 1.01699 1.21763 1.01507 0.91329 0.99971 1.22091 1.01537 0.94321 0.83833 0.85685 1.21039 0.79349 0.79643 0.88562 1.90739 1.64643 1.66832 1.13686 1.44473 1.44803 1.35891 1.10333 1.16052 0.81180 0.82757 0.81258 1.90958 1.56538 1.44036 1.51048 1.48404 1.42499 1.32892 1.09194 1.19295 0.94530 0.97016 0.73238 1.21394 1.05804 1.29996 1.00663 0.92153 1.24911 0.98189 0.95201 0.95468 1.69906 1.39263 1.38293 1.05471 0.86509 0.83032 0.80285 0.77361 1.20077 1.21044 1.20081 0.92209 0.92877 0.92477 0.89711 0.92943 0.92753 0.92556 0.89103 0.91510 0.73671 0.93092 0.93847 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.86 37.16 0.33 -1.45 16 2 C -0.10 -1.27 2.86 -90.62 -0.26 -1.53 16 3 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 4 C -0.11 -1.52 4.37 -26.73 -0.12 -1.63 16 5 C 0.09 1.48 3.33 -68.20 -0.23 1.25 16 6 H 0.13 2.03 6.43 -51.93 -0.33 1.69 16 7 C 0.53 8.35 7.98 -10.55 -0.08 8.26 16 8 O -0.49 -8.05 16.36 5.60 0.09 -7.96 16 9 N -0.69 -10.95 5.70 -15.79 -0.09 -11.04 16 10 C 0.69 13.99 8.68 -88.01 -0.76 13.22 16 11 O -0.55 -13.26 17.65 5.33 0.09 -13.17 16 12 N -0.59 -12.07 2.72 -173.77 -0.47 -12.54 16 13 C 0.28 6.67 5.81 -5.19 -0.03 6.64 16 14 C -0.54 -14.32 9.39 -34.44 -0.32 -14.65 16 15 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 16 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 18 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 25 H 0.08 1.13 6.28 -51.93 -0.33 0.80 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.35 7.24 -51.93 -0.38 0.98 16 30 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.42 5.53 8.96 -40.82 -0.37 5.17 16 32 H 0.05 1.38 7.93 -51.93 -0.41 0.96 16 33 H 0.04 1.04 7.23 -51.92 -0.38 0.66 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -30.01 288.21 -6.17 -36.18 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.62 Total: 1.95 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -1.23 Total: 10.61 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.17 Total: -47.74 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.19 Total: -21.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.01 -6.17 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261056901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.880 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds