Wall clock time and date at job start Mon Mar 30 2020 04:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.31331 * 114.08342 * 85.83250 * 3 2 1 5 5 O 1.21281 * 116.49345 * 2.76004 * 4 3 2 6 6 C 1.49235 * 127.01689 * 182.73199 * 4 3 2 7 7 C 1.50706 * 110.81875 * 313.65178 * 6 4 3 8 8 O 1.21302 * 120.30606 * 244.45279 * 7 6 4 9 9 N 1.32519 * 119.40341 * 64.65492 * 7 6 4 10 10 C 1.37098 * 118.74344 * 175.22931 * 9 7 6 11 11 H 1.07998 * 120.00152 * 139.80765 * 10 9 7 12 12 C 1.38952 * 119.99828 * 319.80045 * 10 9 7 13 13 N 1.31411 * 119.99693 * 149.08532 * 12 10 9 14 14 Si 1.86792 * 120.00244 * 329.08325 * 12 10 9 15 15 H 1.48501 * 109.47469 * 270.00188 * 14 12 10 16 16 H 1.48499 * 109.47354 * 149.99771 * 14 12 10 17 17 H 1.48506 * 109.47059 * 29.99832 * 14 12 10 18 18 C 1.45580 * 122.51583 * 354.95465 * 9 7 6 19 19 C 1.44717 * 114.08684 * 265.82070 * 3 2 1 20 20 H 1.08998 * 108.79168 * 287.97856 * 19 3 2 21 21 C 1.53002 * 108.70339 * 46.26369 * 19 3 2 22 22 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47164 * 299.99544 * 1 2 3 24 24 H 1.09000 * 109.47120 * 59.99741 * 1 2 3 25 25 H 1.09002 * 109.47164 * 240.00456 * 2 1 3 26 26 H 1.08991 * 109.47374 * 120.00166 * 2 1 3 27 27 H 1.09000 * 109.17689 * 74.12682 * 6 4 3 28 28 H 1.09000 * 109.17431 * 193.40793 * 6 4 3 29 29 H 0.97001 * 120.00569 * 354.91285 * 13 12 10 30 30 H 1.09001 * 109.10541 * 49.48965 * 18 9 7 31 31 H 1.08998 * 109.10344 * 168.53212 * 18 9 7 32 32 H 1.08999 * 109.46758 * 178.74548 * 21 19 3 33 33 H 1.08995 * 109.47161 * 298.74656 * 21 19 3 34 34 H 1.09005 * 109.47123 * 58.74829 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1149 1.9155 1.1958 5 8 1.8435 1.1958 2.1335 6 6 2.5230 3.3127 1.5254 7 6 3.7539 3.7079 0.7509 8 8 4.7906 3.9514 1.3318 9 7 3.6926 3.7911 -0.5702 10 6 4.7901 4.2469 -1.2538 11 1 5.0776 3.7820 -2.1852 12 6 5.5324 5.3072 -0.7483 13 7 6.8233 5.3767 -0.9840 14 14 4.6954 6.6336 0.2662 15 1 4.2211 7.7177 -0.6310 16 1 5.6614 7.1900 1.2472 17 1 3.5380 6.0475 0.9889 18 6 2.5063 3.4114 -1.3240 19 6 2.3060 1.9060 -1.3176 20 1 3.2107 1.4297 -1.6954 21 6 1.1422 1.5597 -2.2485 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7072 3.9918 1.2776 28 1 2.7345 3.3816 2.5924 29 1 7.2716 4.6518 -1.4471 30 1 1.6332 3.8894 -0.8798 31 1 2.6135 3.7527 -2.3535 32 1 1.3359 1.9688 -3.2400 33 1 1.0407 0.4766 -2.3158 34 1 0.2208 1.9871 -1.8527 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057155.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:56 Heat of formation + Delta-G solvation = -40.113848 kcal Electronic energy + Delta-G solvation = -18602.880754 eV Core-core repulsion = 15730.086934 eV Total energy + Delta-G solvation = -2872.793820 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90898 -38.61366 -36.84555 -34.45436 -32.74865 -31.26121 -30.97679 -29.27399 -26.14221 -24.07127 -23.10937 -22.41891 -19.80854 -18.88212 -17.92154 -16.62718 -16.27822 -16.06436 -14.85622 -14.77083 -14.36096 -13.96766 -13.51741 -13.44795 -13.17099 -12.73869 -12.62145 -12.44157 -12.14912 -11.83403 -11.68523 -11.56893 -11.26972 -11.10578 -10.72360 -10.57889 -9.98328 -9.83135 -9.47814 -8.83353 -8.62336 -8.44329 -7.69140 -6.74982 -4.05669 2.85629 3.14778 3.30282 3.47143 3.62079 3.88824 4.38799 4.53158 4.84830 4.87550 4.99514 5.14182 5.21122 5.30528 5.36414 5.43887 5.45874 5.55758 5.62850 5.73858 5.80598 5.90820 6.01112 6.05963 6.14790 6.26609 6.29816 6.52296 7.76783 7.80963 8.20121 8.37968 8.54678 8.84306 9.34917 9.78580 10.62637 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035414 B = 0.009338 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.450015 B = 2997.829815 C = 3368.764941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 N -0.585 5.585 4 C 0.533 3.467 5 O -0.564 6.564 6 C -0.157 4.157 7 C 0.467 3.533 8 O -0.550 6.550 9 N -0.448 5.448 10 C -0.458 4.458 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.846 5.846 14 Si 1.071 2.929 15 H -0.299 1.299 16 H -0.283 1.283 17 H -0.289 1.289 18 C 0.095 3.905 19 C 0.126 3.874 20 H 0.079 0.921 21 C -0.163 4.163 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.276 0.724 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 -6.586 -3.644 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 N -0.316 5.316 4 C 0.321 3.679 5 O -0.445 6.445 6 C -0.200 4.200 7 C 0.255 3.745 8 O -0.433 6.433 9 N -0.168 5.168 10 C -0.582 4.582 11 H 0.098 0.902 12 C -0.143 4.143 13 N -0.476 5.476 14 Si 0.900 3.100 15 H -0.228 1.228 16 H -0.209 1.209 17 H -0.215 1.215 18 C -0.030 4.030 19 C 0.021 3.979 20 H 0.097 0.903 21 C -0.222 4.222 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.857 -5.327 -2.150 14.082 hybrid contribution -0.335 -1.498 -0.963 1.812 sum -13.193 -6.825 -3.113 15.176 Atomic orbital electron populations 1.22281 0.95802 1.01987 1.02674 1.21561 0.94706 0.83973 1.03157 1.46695 1.64251 1.14966 1.05736 1.18952 0.77049 0.89675 0.82214 1.90675 1.51562 1.59720 1.42525 1.21849 0.99822 0.93967 1.04334 1.19045 0.88828 0.83096 0.83562 1.90558 1.30998 1.53464 1.68240 1.42976 1.12319 1.57124 1.04409 1.20123 1.07006 1.20560 1.10526 0.90240 1.26233 0.94319 0.98253 0.95537 1.70803 1.08010 1.35830 1.32914 0.83503 0.76124 0.74201 0.76192 1.22801 1.20880 1.21524 1.21527 0.90043 0.91610 0.99776 1.21098 0.98502 0.96818 0.81469 0.90308 1.22391 0.98100 1.02254 0.99418 0.92085 0.92219 0.91896 0.90810 0.89462 0.87679 0.86205 0.91367 0.92433 0.88010 0.90938 0.91562 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.66 37.16 0.36 -1.53 16 2 C 0.09 1.19 4.98 -4.04 -0.02 1.17 16 3 N -0.59 -9.42 2.71 -169.66 -0.46 -9.88 16 4 C 0.53 10.13 6.95 -13.19 -0.09 10.04 16 5 O -0.56 -11.77 15.12 5.56 0.08 -11.69 16 6 C -0.16 -3.10 5.34 -29.73 -0.16 -3.26 16 7 C 0.47 11.47 4.63 -11.98 -0.06 11.41 16 8 O -0.55 -16.03 13.79 5.54 0.08 -15.95 16 9 N -0.45 -10.41 2.24 -116.74 -0.26 -10.67 16 10 C -0.46 -12.35 9.19 -14.93 -0.14 -12.49 16 11 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 12 C 0.07 2.04 4.39 -17.47 -0.08 1.96 16 13 N -0.85 -25.51 13.69 55.50 0.76 -24.75 16 14 Si 1.07 27.20 26.57 -169.99 -4.52 22.68 16 15 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.29 -7.00 5.80 56.52 0.33 -6.68 16 18 C 0.10 1.62 4.92 -5.11 -0.03 1.59 16 19 C 0.13 1.83 3.06 -69.46 -0.21 1.62 16 20 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 21 C -0.16 -1.65 7.58 37.16 0.28 -1.37 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.78 7.79 -51.93 -0.40 0.38 16 24 H 0.06 0.61 5.13 -51.93 -0.27 0.35 16 25 H 0.07 0.82 6.84 -51.93 -0.36 0.47 16 26 H 0.09 1.34 6.87 -51.93 -0.36 0.98 16 27 H 0.11 1.76 7.54 -51.93 -0.39 1.37 16 28 H 0.12 2.37 8.03 -51.93 -0.42 1.95 16 29 H 0.28 8.15 8.73 -40.82 -0.36 7.80 16 30 H 0.06 0.87 7.28 -51.93 -0.38 0.49 16 31 H 0.10 1.59 7.79 -51.93 -0.40 1.19 16 32 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 33 H 0.07 0.59 5.89 -51.93 -0.31 0.28 16 34 H 0.06 0.62 7.05 -51.93 -0.37 0.26 16 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -33.95 266.24 -5.01 -38.95 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.56 Total: -1.85 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.14 Total: 9.15 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.04 Total: -45.31 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: 0.16 Total: -27.64 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -4.52 Total: 22.68 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.95 -5.01 -38.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057155.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.161 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds