Wall clock time and date at job start Mon Mar 30 2020 04:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.31331 * 114.08342 * 85.83250 * 3 2 1 5 5 O 1.21281 * 116.49345 * 2.76004 * 4 3 2 6 6 C 1.49235 * 127.01689 * 182.73199 * 4 3 2 7 7 C 1.50706 * 110.81875 * 313.65178 * 6 4 3 8 8 O 1.21302 * 120.30606 * 244.45279 * 7 6 4 9 9 N 1.32519 * 119.40341 * 64.65492 * 7 6 4 10 10 C 1.37098 * 118.74344 * 175.22931 * 9 7 6 11 11 H 1.07998 * 120.00152 * 139.80765 * 10 9 7 12 12 C 1.38952 * 119.99828 * 319.80045 * 10 9 7 13 13 N 1.31411 * 119.99693 * 149.08532 * 12 10 9 14 14 Si 1.86792 * 120.00244 * 329.08325 * 12 10 9 15 15 H 1.48501 * 109.47469 * 270.00188 * 14 12 10 16 16 H 1.48499 * 109.47354 * 149.99771 * 14 12 10 17 17 H 1.48506 * 109.47059 * 29.99832 * 14 12 10 18 18 C 1.45580 * 122.51583 * 354.95465 * 9 7 6 19 19 C 1.44717 * 114.08684 * 265.82070 * 3 2 1 20 20 H 1.08998 * 108.79168 * 287.97856 * 19 3 2 21 21 C 1.53002 * 108.70339 * 46.26369 * 19 3 2 22 22 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47164 * 299.99544 * 1 2 3 24 24 H 1.09000 * 109.47120 * 59.99741 * 1 2 3 25 25 H 1.09002 * 109.47164 * 240.00456 * 2 1 3 26 26 H 1.08991 * 109.47374 * 120.00166 * 2 1 3 27 27 H 1.09000 * 109.17689 * 74.12682 * 6 4 3 28 28 H 1.09000 * 109.17431 * 193.40793 * 6 4 3 29 29 H 0.97001 * 120.00569 * 354.91285 * 13 12 10 30 30 H 1.09001 * 109.10541 * 49.48965 * 18 9 7 31 31 H 1.08998 * 109.10344 * 168.53212 * 18 9 7 32 32 H 1.08999 * 109.46758 * 178.74548 * 21 19 3 33 33 H 1.08995 * 109.47161 * 298.74656 * 21 19 3 34 34 H 1.09005 * 109.47123 * 58.74829 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1149 1.9155 1.1958 5 8 1.8435 1.1958 2.1335 6 6 2.5230 3.3127 1.5254 7 6 3.7539 3.7079 0.7509 8 8 4.7906 3.9514 1.3318 9 7 3.6926 3.7911 -0.5702 10 6 4.7901 4.2469 -1.2538 11 1 5.0776 3.7820 -2.1852 12 6 5.5324 5.3072 -0.7483 13 7 6.8233 5.3767 -0.9840 14 14 4.6954 6.6336 0.2662 15 1 4.2211 7.7177 -0.6310 16 1 5.6614 7.1900 1.2472 17 1 3.5380 6.0475 0.9889 18 6 2.5063 3.4114 -1.3240 19 6 2.3060 1.9060 -1.3176 20 1 3.2107 1.4297 -1.6954 21 6 1.1422 1.5597 -2.2485 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7072 3.9918 1.2776 28 1 2.7345 3.3816 2.5924 29 1 7.2716 4.6518 -1.4471 30 1 1.6332 3.8894 -0.8798 31 1 2.6135 3.7527 -2.3535 32 1 1.3359 1.9688 -3.2400 33 1 1.0407 0.4766 -2.3158 34 1 0.2208 1.9871 -1.8527 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057155.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:56 Heat of formation + Delta-G solvation = -64.939505 kcal Electronic energy + Delta-G solvation = -18603.957275 eV Core-core repulsion = 15730.086934 eV Total energy + Delta-G solvation = -2873.870341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.37328 -40.39268 -38.25331 -36.24922 -34.65901 -32.60536 -32.46730 -30.60005 -27.52804 -25.93269 -24.37586 -23.56554 -21.69392 -20.26845 -19.78464 -18.22973 -17.70714 -17.54371 -16.66207 -16.46741 -15.87010 -15.36003 -15.19223 -14.76683 -14.63675 -14.37401 -14.00812 -13.65433 -13.56381 -13.15231 -13.03910 -12.80767 -12.66623 -12.31963 -12.19548 -12.05385 -11.79399 -11.67808 -11.08942 -10.80434 -10.40487 -9.92191 -9.70879 -8.94248 -6.22415 1.25619 1.37701 1.45163 1.58567 1.87212 2.06036 2.52116 2.63906 3.06067 3.49426 3.61800 3.76473 3.99403 4.07774 4.19521 4.21456 4.43645 4.49205 4.58122 4.62418 4.69579 4.81705 4.93448 5.03371 5.11650 5.25748 5.39576 5.43359 5.63013 6.03241 6.44341 6.53802 6.82770 6.96916 7.34575 7.81711 8.41471 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.035414 B = 0.009338 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.450015 B = 2997.829815 C = 3368.764941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.084 3.916 3 N -0.582 5.582 4 C 0.528 3.472 5 O -0.590 6.590 6 C -0.149 4.149 7 C 0.457 3.543 8 O -0.608 6.608 9 N -0.453 5.453 10 C -0.452 4.452 11 H 0.065 0.935 12 C 0.026 3.974 13 N -0.885 5.885 14 Si 1.097 2.903 15 H -0.267 1.267 16 H -0.304 1.304 17 H -0.273 1.273 18 C 0.087 3.913 19 C 0.126 3.874 20 H 0.063 0.937 21 C -0.153 4.153 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.265 0.735 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.868 -7.204 -4.931 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.038 4.038 3 N -0.312 5.312 4 C 0.316 3.684 5 O -0.473 6.473 6 C -0.191 4.191 7 C 0.246 3.754 8 O -0.494 6.494 9 N -0.172 5.172 10 C -0.577 4.577 11 H 0.083 0.917 12 C -0.182 4.182 13 N -0.516 5.516 14 Si 0.921 3.079 15 H -0.193 1.193 16 H -0.231 1.231 17 H -0.198 1.198 18 C -0.036 4.036 19 C 0.022 3.978 20 H 0.081 0.919 21 C -0.211 4.211 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.201 -5.969 -3.516 17.620 hybrid contribution 0.693 -1.432 -0.609 1.704 sum -15.507 -7.402 -4.125 17.671 Atomic orbital electron populations 1.22217 0.93546 1.03431 1.02590 1.21784 0.96510 0.82230 1.03276 1.46820 1.62952 1.16007 1.05388 1.18788 0.77430 0.89148 0.83039 1.90673 1.53095 1.59971 1.43524 1.21754 0.98516 0.95580 1.03278 1.19833 0.89526 0.81945 0.84113 1.90536 1.33455 1.55768 1.69617 1.43139 1.13434 1.56281 1.04373 1.20054 1.08424 1.19642 1.09607 0.91698 1.27235 0.94321 1.00536 0.96116 1.70887 1.09149 1.36217 1.35365 0.83222 0.75696 0.73547 0.75414 1.19317 1.23095 1.19842 1.21869 0.88118 0.93601 1.00039 1.21182 1.00247 0.94838 0.81491 0.91918 1.22350 0.96170 1.03725 0.98851 0.89985 0.94395 0.89750 0.88137 0.91956 0.84111 0.86691 0.92510 0.89463 0.86460 0.89112 0.89768 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.66 71.98 0.70 -2.24 16 2 C 0.08 2.01 4.98 86.38 0.43 2.44 16 3 N -0.58 -17.13 2.71 -810.96 -2.20 -19.33 16 4 C 0.53 19.16 6.95 87.73 0.61 19.77 16 5 O -0.59 -24.06 15.12 -3.03 -0.05 -24.10 16 6 C -0.15 -5.63 5.34 28.65 0.15 -5.48 16 7 C 0.46 22.09 4.63 88.01 0.41 22.50 16 8 O -0.61 -35.95 13.79 -3.10 -0.04 -35.99 16 9 N -0.45 -20.44 2.24 -642.88 -1.44 -21.88 16 10 C -0.45 -24.44 9.19 84.04 0.77 -23.66 16 11 H 0.07 3.63 8.06 -2.91 -0.02 3.60 16 12 C 0.03 1.53 4.39 84.93 0.37 1.90 16 13 N -0.88 -55.04 13.69 21.66 0.30 -54.75 16 14 Si 1.10 54.63 26.57 68.60 1.82 56.45 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 17 H -0.27 -12.70 5.80 99.48 0.58 -12.12 16 18 C 0.09 2.65 4.92 86.18 0.42 3.08 16 19 C 0.13 3.24 3.06 44.95 0.14 3.38 16 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 21 C -0.15 -2.27 7.58 71.98 0.55 -1.72 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.04 0.88 7.79 -2.39 -0.02 0.86 16 24 H 0.08 1.19 5.13 -2.39 -0.01 1.18 16 25 H 0.10 1.85 6.84 -2.39 -0.02 1.83 16 26 H 0.06 1.83 6.87 -2.39 -0.02 1.81 16 27 H 0.14 4.23 7.54 -2.39 -0.02 4.21 16 28 H 0.11 4.47 8.03 -2.39 -0.02 4.45 16 29 H 0.27 16.39 8.73 -92.71 -0.81 15.58 16 30 H 0.09 2.22 7.28 -2.39 -0.02 2.20 16 31 H 0.12 3.24 7.79 -2.39 -0.02 3.23 16 32 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 33 H 0.08 1.01 5.89 -2.39 -0.01 0.99 16 34 H 0.08 1.02 7.05 -2.38 -0.02 1.00 16 Total: -1.00 -77.02 266.24 3.87 -73.15 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.93 Total: 6.51 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 4.55 Total: 19.95 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -3.35 Total: -95.96 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -0.09 Total: -60.09 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 1.82 Total: 56.45 kcal Total: -77.02 3.87 -73.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057155.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.207 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds