Wall clock time and date at job start Mon Mar 30 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46933 * 2 1 4 4 C 1.52996 * 109.47001 * 119.99786 * 2 1 3 5 5 H 1.09002 * 109.30982 * 61.48579 * 4 2 1 6 6 C 1.52632 * 109.30765 * 301.88273 * 4 2 1 7 7 N 1.46298 * 110.44979 * 292.40005 * 6 4 2 8 8 C 1.34983 * 119.96224 * 323.70927 * 7 6 4 9 9 O 1.21341 * 120.63044 * 181.15541 * 8 7 6 10 10 C 1.49815 * 118.73908 * 1.42656 * 8 7 6 11 11 O 1.21353 * 120.63135 * 198.29612 * 10 8 7 12 12 N 1.34816 * 118.86099 * 18.04105 * 10 8 7 13 13 C 1.46501 * 120.06498 * 181.38430 * 12 10 8 14 14 C 1.50697 * 109.47224 * 270.31192 * 13 12 10 15 15 H 1.08007 * 119.99767 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00061 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00017 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00023 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.46989 * 89.99616 * 18 16 14 20 20 H 1.48499 * 109.47246 * 209.99428 * 18 16 14 21 21 H 1.48494 * 109.47176 * 329.99696 * 18 16 14 22 22 H 1.09002 * 109.47241 * 300.00026 * 1 2 3 23 23 H 1.08999 * 109.47043 * 60.00393 * 1 2 3 24 24 H 1.09000 * 109.47233 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46558 * 239.99749 * 2 1 3 26 26 H 1.08999 * 109.46818 * 174.16212 * 3 2 1 27 27 H 1.09003 * 109.46643 * 294.15843 * 3 2 1 28 28 H 1.08998 * 109.47415 * 54.15887 * 3 2 1 29 29 H 1.09002 * 109.30601 * 172.09636 * 6 4 2 30 30 H 1.08996 * 109.30772 * 52.70401 * 6 4 2 31 31 H 0.97004 * 120.01935 * 143.68988 * 7 6 4 32 32 H 1.08994 * 109.47394 * 30.31759 * 13 12 10 33 33 H 1.09008 * 109.46824 * 150.31896 * 13 12 10 34 34 H 0.97003 * 120.00188 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6972 -1.7558 1.2334 6 6 1.4909 -0.0266 2.4925 7 7 2.0713 1.3093 2.6300 8 6 3.3579 1.5243 2.2830 9 8 3.8577 2.6225 2.4116 10 6 4.1554 0.3828 1.7303 11 8 5.3681 0.4257 1.7154 12 7 3.5028 -0.6965 1.2540 13 6 4.2570 -1.8404 0.7354 14 6 4.5099 -1.6491 -0.7378 15 1 4.1456 -0.7637 -1.2377 16 6 5.2071 -2.6038 -1.4473 17 7 5.4283 -2.4367 -2.7329 18 14 5.8378 -4.1348 -0.5824 19 1 4.8047 -5.1998 -0.6453 20 1 7.0765 -4.6066 -1.2517 21 1 6.1332 -3.8150 0.8373 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1250 1.4443 0.1045 27 1 1.7645 1.9252 -0.9377 28 1 1.5938 1.9857 0.8330 29 1 1.7363 -0.6187 3.3741 30 1 0.4074 0.0580 2.4091 31 1 1.5317 2.0402 2.9700 32 1 5.2090 -1.9162 1.2607 33 1 3.6830 -2.7541 0.8899 34 1 5.9185 -3.1085 -3.2321 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:56 Heat of formation + Delta-G solvation = -51.052642 kcal Electronic energy + Delta-G solvation = -18518.299749 eV Core-core repulsion = 15645.031588 eV Total energy + Delta-G solvation = -2873.268161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13761 -37.88782 -37.51959 -34.11227 -33.69826 -32.34947 -29.04201 -28.50247 -26.60840 -24.48777 -24.00457 -21.64736 -20.22939 -17.93528 -17.67583 -17.13265 -17.02056 -16.19553 -15.16552 -14.88235 -14.28007 -14.00051 -13.94812 -13.63709 -13.08284 -12.72339 -12.57584 -12.27083 -12.23023 -11.85678 -11.72455 -11.35625 -11.00448 -10.85447 -10.66595 -10.59056 -10.36021 -10.17895 -9.57506 -9.04801 -8.89384 -8.65177 -7.96731 -6.14114 -4.14271 1.94412 3.05280 3.21932 3.29583 3.34265 3.39000 3.78001 4.33972 4.51745 4.62585 4.89323 5.16036 5.18506 5.19804 5.34269 5.42189 5.65418 5.76424 5.92584 6.01719 6.08646 6.26237 6.38567 6.52785 6.66043 6.67548 6.81797 6.95124 7.12979 7.50664 7.82330 8.02303 8.37773 8.64870 8.89612 9.44543 10.98744 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.009355 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.675645 B = 2992.432100 C = 3392.938062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.162 4.162 4 C 0.130 3.870 5 H 0.109 0.891 6 C 0.096 3.904 7 N -0.720 5.720 8 C 0.523 3.477 9 O -0.506 6.506 10 C 0.503 3.497 11 O -0.492 6.492 12 N -0.574 5.574 13 C 0.213 3.787 14 C -0.532 4.532 15 H 0.079 0.921 16 C 0.075 3.925 17 N -0.893 5.893 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.264 1.264 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.403 0.597 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 1.606 9.391 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.219 4.219 4 C 0.025 3.975 5 H 0.127 0.873 6 C -0.029 4.029 7 N -0.379 5.379 8 C 0.305 3.695 9 O -0.379 6.379 10 C 0.284 3.716 11 O -0.364 6.364 12 N -0.309 5.309 13 C 0.093 3.907 14 C -0.570 4.570 15 H 0.097 0.903 16 C -0.128 4.128 17 N -0.531 5.531 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.188 1.188 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.240 0.760 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.527 1.960 9.220 15.677 hybrid contribution 0.056 -0.626 0.217 0.665 sum -12.471 1.333 9.438 15.696 Atomic orbital electron populations 1.21881 0.94903 1.01737 1.01597 1.21573 0.95193 0.96803 0.99481 1.22383 1.01189 0.96252 1.02100 1.21394 0.80925 1.01179 0.94013 0.87337 1.21952 0.99577 0.83197 0.98162 1.46193 1.11975 1.12564 1.67142 1.20753 0.81914 0.89640 0.77179 1.90770 1.70351 1.24475 1.52259 1.20000 0.88180 0.82955 0.80491 1.90771 1.12731 1.78075 1.54789 1.48118 1.05517 1.17639 1.59584 1.19839 0.92221 0.82560 0.96042 1.21289 1.36559 1.07943 0.91254 0.90344 1.24847 0.95151 0.98120 0.94711 1.69888 1.40670 1.35351 1.07199 0.86895 0.79090 0.83447 0.80609 1.20043 1.20890 1.18819 0.92873 0.92460 0.92356 0.88381 0.92593 0.92803 0.91722 0.91024 0.87845 0.75966 0.93827 0.95008 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.80 37.16 0.33 -1.10 16 2 C -0.11 -1.58 2.94 -90.62 -0.27 -1.84 16 3 C -0.16 -2.54 7.38 37.16 0.27 -2.26 16 4 C 0.13 1.80 2.73 -68.23 -0.19 1.61 16 5 H 0.11 1.31 7.81 -51.93 -0.41 0.90 16 6 C 0.10 0.95 6.25 -4.34 -0.03 0.92 16 7 N -0.72 -8.74 3.53 -60.88 -0.21 -8.95 16 8 C 0.52 9.49 5.14 -11.32 -0.06 9.43 16 9 O -0.51 -10.77 17.88 -8.95 -0.16 -10.93 16 10 C 0.50 10.86 5.98 -11.39 -0.07 10.80 16 11 O -0.49 -12.93 16.68 -8.96 -0.15 -13.08 16 12 N -0.57 -11.20 2.29 -168.18 -0.39 -11.59 16 13 C 0.21 4.89 4.27 -5.19 -0.02 4.87 16 14 C -0.53 -14.55 9.78 -34.44 -0.34 -14.89 16 15 H 0.08 2.36 7.67 -52.48 -0.40 1.96 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 18 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 22 H 0.05 0.41 6.22 -51.93 -0.32 0.09 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 1.75 7.59 -51.93 -0.39 1.36 16 26 H 0.06 1.11 4.97 -51.93 -0.26 0.85 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.87 5.45 -51.93 -0.28 0.59 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.65 5.97 -51.93 -0.31 0.34 16 31 H 0.40 3.79 8.91 -40.82 -0.36 3.42 16 32 H 0.04 1.09 6.53 -51.93 -0.34 0.75 16 33 H 0.03 0.66 7.27 -51.92 -0.38 0.28 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 270.56 15.07 4.08 4.08 Total: -1.00 -34.81 270.56 -5.50 -40.31 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.31 Total: 0.63 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.46 Total: 9.53 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.17 Total: -46.57 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.31 Total: -24.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.81 -5.50 -40.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.738 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds