Wall clock time and date at job start Mon Mar 30 2020 04:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47504 * 2 1 4 4 C 1.34769 * 124.18098 * 269.98499 * 3 2 1 5 5 O 1.21238 * 127.15346 * 0.04849 * 4 3 2 6 6 C 1.51581 * 105.69000 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.60131 * 118.52310 * 6 4 3 8 8 C 1.53002 * 110.59523 * 241.47636 * 6 4 3 9 9 N 1.47314 * 103.59231 * 359.97438 * 6 4 3 10 10 C 1.46496 * 126.69222 * 180.26711 * 9 6 4 11 11 H 1.08998 * 109.46947 * 359.70577 * 10 9 6 12 12 C 1.52995 * 109.47054 * 119.71012 * 10 9 6 13 13 C 1.50700 * 109.46980 * 239.71282 * 10 9 6 14 14 H 1.08000 * 120.00296 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99747 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00079 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99806 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47167 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46903 * 120.00437 * 17 15 13 20 20 H 1.48500 * 109.47130 * 240.00300 * 17 15 13 21 21 C 1.33790 * 124.17828 * 90.01939 * 3 2 1 22 22 O 1.21533 * 123.77413 * 359.97043 * 21 3 2 23 23 H 1.08996 * 109.47290 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47656 * 300.00452 * 1 2 3 25 25 H 1.09011 * 109.46938 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.47458 * 239.99720 * 2 1 3 27 27 H 1.09004 * 109.47037 * 120.00304 * 2 1 3 28 28 H 1.08999 * 109.46873 * 174.17344 * 8 6 4 29 29 H 1.09006 * 109.46714 * 294.16820 * 8 6 4 30 30 H 1.08996 * 109.47661 * 54.16895 * 8 6 4 31 31 H 1.09006 * 109.46850 * 180.02562 * 12 10 9 32 32 H 1.08997 * 109.47326 * 299.99899 * 12 10 9 33 33 H 1.09000 * 109.47400 * 60.00707 * 12 10 9 34 34 H 0.97005 * 119.99732 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2710 2.0949 -1.1149 5 8 2.1412 1.7292 -2.2635 6 6 2.7508 3.4500 -0.6342 7 1 3.7688 3.6393 -0.9746 8 6 1.8073 4.5556 -1.1121 9 7 2.7082 3.3316 0.8336 10 6 3.0685 4.3664 1.8061 11 1 3.3882 5.2651 1.2786 12 6 1.8542 4.6915 2.6782 13 6 4.1932 3.8679 2.6764 14 1 4.5988 2.8791 2.5211 15 6 4.7044 4.6743 3.6711 16 7 4.2102 5.8782 3.8607 17 14 6.0982 4.0562 4.7505 18 1 6.4715 2.6798 4.3369 19 1 7.2729 4.9526 4.6035 20 1 5.6583 4.0452 6.1688 21 6 2.2693 2.0896 1.1068 22 8 2.1170 1.6595 2.2333 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.1092 5.5061 -0.6722 29 1 1.8528 4.6274 -2.1988 30 1 0.7879 4.3210 -0.8058 31 1 2.1222 5.4617 3.4015 32 1 1.0407 5.0520 2.0487 33 1 1.5346 3.7927 3.2057 34 1 4.5697 6.4454 4.5607 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:51 Heat of formation + Delta-G solvation = -63.441669 kcal Electronic energy + Delta-G solvation = -18203.385971 eV Core-core repulsion = 15329.580581 eV Total energy + Delta-G solvation = -2873.805390 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.28729 -39.61483 -37.64847 -36.82846 -35.33640 -32.80940 -31.94757 -29.96195 -27.28648 -25.98815 -25.01871 -23.41308 -22.34735 -20.80784 -18.67305 -18.19005 -17.79592 -17.25115 -16.76433 -16.52628 -15.57878 -15.39003 -15.14415 -14.92735 -14.54741 -14.49881 -13.69659 -13.44960 -13.41730 -13.21122 -13.11248 -12.84181 -12.79948 -12.50463 -12.34647 -12.20062 -12.18036 -11.65807 -11.21463 -10.93956 -10.79355 -10.51278 -9.62240 -8.17537 -6.28501 0.66920 1.29171 1.38386 1.42044 1.52524 2.13137 2.19039 2.44780 3.09177 3.13463 3.75180 3.98027 4.08117 4.15094 4.30864 4.43228 4.50523 4.73627 4.75339 4.79094 4.92146 4.96930 4.99809 5.07611 5.17488 5.18106 5.45765 5.63388 5.75309 5.98996 6.11037 6.36271 6.55794 6.74095 7.26208 7.44755 8.86689 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.008080 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.034898 B = 3464.334690 C = 3798.363722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -0.579 5.579 4 C 0.534 3.466 5 O -0.495 6.495 6 C 0.081 3.919 7 H 0.136 0.864 8 C -0.136 4.136 9 N -0.604 5.604 10 C 0.307 3.693 11 H 0.055 0.945 12 C -0.139 4.139 13 C -0.532 4.532 14 H 0.039 0.961 15 C 0.026 3.974 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.281 1.281 21 C 0.686 3.314 22 O -0.578 6.578 23 H 0.102 0.898 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.022 0.978 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -4.916 -9.794 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.014 4.014 3 N -0.326 5.326 4 C 0.322 3.678 5 O -0.367 6.367 6 C -0.026 4.026 7 H 0.153 0.847 8 C -0.194 4.194 9 N -0.341 5.341 10 C 0.208 3.792 11 H 0.073 0.927 12 C -0.198 4.198 13 C -0.571 4.571 14 H 0.057 0.943 15 C -0.175 4.175 16 N -0.548 5.548 17 Si 0.780 3.220 18 H -0.206 1.206 19 H -0.195 1.195 20 H -0.207 1.207 21 C 0.388 3.612 22 O -0.454 6.454 23 H 0.121 0.879 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.127 0.873 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.006 -5.133 -9.590 11.974 hybrid contribution 0.753 -0.318 0.985 1.280 sum -4.252 -5.451 -8.605 11.038 Atomic orbital electron populations 1.22049 0.93490 1.04351 1.01668 1.21831 0.96384 0.78287 1.04885 1.46659 1.61659 1.16498 1.07760 1.20984 0.75044 0.87423 0.84303 1.90723 1.51775 1.76145 1.18077 1.22332 1.04271 0.94610 0.81385 0.84674 1.21868 0.97581 0.96634 1.03300 1.48524 1.66391 1.12678 1.06511 1.18504 0.92208 0.83949 0.84558 0.92725 1.21954 0.96590 1.00704 1.00554 1.21482 1.17611 1.00730 1.17257 0.94270 1.25453 0.99115 0.95057 0.97833 1.69923 1.42651 1.08808 1.33451 0.85573 0.79588 0.78144 0.78693 1.20593 1.19533 1.20691 1.16179 0.78712 0.82329 0.83946 1.90873 1.58969 1.73683 1.21885 0.87901 0.93794 0.92301 0.87335 0.89343 0.90004 0.87974 0.92427 0.90471 0.94649 0.95915 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.11 2.87 6.42 86.38 0.55 3.42 16 3 N -0.58 -19.78 2.60 -773.13 -2.01 -21.80 16 4 C 0.53 16.97 7.65 87.94 0.67 17.64 16 5 O -0.49 -16.11 17.76 -2.90 -0.05 -16.16 16 6 C 0.08 2.52 4.04 44.37 0.18 2.70 16 7 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 8 C -0.14 -3.41 9.46 71.98 0.68 -2.73 16 9 N -0.60 -24.88 2.60 -798.01 -2.07 -26.95 16 10 C 0.31 14.68 2.76 44.24 0.12 14.80 16 11 H 0.06 2.61 7.92 -2.39 -0.02 2.59 16 12 C -0.14 -6.69 9.01 71.98 0.65 -6.04 16 13 C -0.53 -29.07 8.19 25.60 0.21 -28.86 16 14 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 15 C 0.03 1.38 5.30 84.66 0.45 1.82 16 16 N -0.91 -49.40 11.32 21.45 0.24 -49.16 16 17 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 C 0.69 29.27 7.73 179.44 1.39 30.65 16 22 O -0.58 -29.17 15.69 -3.82 -0.06 -29.23 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.11 2.45 8.00 -2.38 -0.02 2.44 16 27 H 0.09 2.47 7.86 -2.38 -0.02 2.45 16 28 H 0.08 2.06 7.92 -2.39 -0.02 2.05 16 29 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 4.00 6.07 -2.38 -0.01 3.99 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.02 1.15 6.97 -2.39 -0.02 1.13 16 34 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 Total: -1.00 -64.52 289.40 4.80 -59.72 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.08 Total: 7.22 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 5.64 Total: 30.50 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -3.84 Total: -97.91 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.11 Total: -45.39 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.52 4.80 -59.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.720 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds