Wall clock time and date at job start Mon Mar 30 2020 03:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47158 * 2 1 4 4 C 1.53004 * 109.47178 * 120.00126 * 2 1 3 5 5 H 1.08995 * 109.24005 * 181.44427 * 4 2 1 6 6 C 1.52937 * 109.26754 * 301.16520 * 4 2 1 7 7 N 1.46322 * 110.39809 * 171.81264 * 6 4 2 8 8 C 1.46495 * 119.91142 * 142.44682 * 7 6 4 9 9 C 1.34793 * 120.18306 * 322.42648 * 7 6 4 10 10 O 1.21439 * 120.42316 * 185.99175 * 9 7 6 11 11 C 1.49038 * 119.15225 * 5.97008 * 9 7 6 12 12 O 1.21501 * 120.42864 * 191.79648 * 11 9 7 13 13 N 1.34796 * 119.15404 * 11.76866 * 11 9 7 14 14 C 1.36120 * 119.90991 * 185.94446 * 13 11 9 15 15 H 1.07993 * 120.00565 * 223.21664 * 14 13 11 16 16 C 1.39593 * 119.99592 * 43.21802 * 14 13 11 17 17 N 1.31016 * 119.99855 * 22.42840 * 16 14 13 18 18 Si 1.86798 * 119.99765 * 202.42458 * 16 14 13 19 19 H 1.48504 * 109.46932 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47331 * 300.00221 * 18 16 14 21 21 H 1.48493 * 109.47127 * 60.00497 * 18 16 14 22 22 H 1.09000 * 109.47346 * 306.25206 * 1 2 3 23 23 H 1.08993 * 109.47076 * 66.25636 * 1 2 3 24 24 H 1.09007 * 109.47117 * 186.25210 * 1 2 3 25 25 H 1.08997 * 109.47009 * 239.99863 * 2 1 3 26 26 H 1.09004 * 109.46986 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47062 * 300.00319 * 3 2 1 28 28 H 1.09007 * 109.46890 * 60.00407 * 3 2 1 29 29 H 1.09004 * 109.44532 * 51.50047 * 6 4 2 30 30 H 1.09001 * 109.17033 * 291.95118 * 6 4 2 31 31 H 1.08994 * 109.47856 * 179.97438 * 8 7 6 32 32 H 1.09006 * 109.47385 * 299.98138 * 8 7 6 33 33 H 1.09009 * 109.47284 * 59.97561 * 8 7 6 34 34 H 0.96996 * 120.00140 * 0.94798 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1297 -0.6967 1.2585 6 6 1.5039 -0.0139 2.4947 7 7 1.8132 -0.7908 3.6954 8 6 2.1824 -0.1034 4.9353 9 6 1.7590 -2.1373 3.6640 10 8 1.9082 -2.7826 4.6818 11 6 1.5133 -2.8239 2.3642 12 8 1.2479 -4.0092 2.3349 13 7 1.5886 -2.1129 1.2215 14 6 1.2494 -2.6929 0.0376 15 1 1.8622 -2.5333 -0.8372 16 6 0.1093 -3.4941 -0.0456 17 7 -0.8552 -3.3539 0.8300 18 14 -0.0412 -4.7659 -1.4054 19 1 -1.3366 -5.4800 -1.2741 20 1 0.0185 -4.0885 -2.7256 21 1 1.0745 -5.7398 -1.2979 22 1 -0.3634 0.6077 0.8287 23 1 -0.3633 0.4138 -0.9406 24 1 -0.3634 -1.0216 0.1119 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 0.4233 0.1017 2.4094 30 1 1.9657 0.9703 2.5740 31 1 2.3752 -0.8397 5.7155 32 1 3.0801 0.4917 4.7674 33 1 1.3665 0.5495 5.2456 34 1 -0.7831 -2.6841 1.5278 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:06 Heat of formation + Delta-G solvation = -78.445112 kcal Electronic energy + Delta-G solvation = -18779.986980 eV Core-core repulsion = 15905.530992 eV Total energy + Delta-G solvation = -2874.455988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09617 -39.64450 -38.62922 -36.13608 -35.19640 -33.53382 -29.99862 -28.74264 -27.85322 -26.58860 -25.34320 -23.70980 -20.90924 -20.51862 -19.26810 -18.43672 -17.74902 -17.13260 -16.33468 -16.09102 -15.93235 -15.39276 -15.31733 -14.84765 -14.68961 -14.01707 -13.76337 -13.59870 -13.48808 -13.11924 -12.96942 -12.71131 -12.52688 -12.14662 -11.99227 -11.94199 -11.74225 -11.71464 -11.31752 -10.70103 -10.26261 -9.91738 -9.53649 -8.74006 -6.13368 0.56071 1.50254 1.63841 1.75768 1.78594 2.31856 2.43956 2.70789 3.19113 3.56511 3.69495 3.95947 4.01425 4.27953 4.36397 4.47261 4.51064 4.62441 4.76225 4.85643 4.93091 4.98089 5.14495 5.20915 5.27901 5.37408 5.59087 5.67047 5.80569 5.93185 6.03187 6.51618 6.75183 6.93785 7.29641 7.84755 8.56580 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.012514 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.577819 B = 2236.879879 C = 3177.516163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 C -0.140 4.140 4 C 0.108 3.892 5 H 0.076 0.924 6 C 0.099 3.901 7 N -0.602 5.602 8 C 0.072 3.928 9 C 0.506 3.494 10 O -0.562 6.562 11 C 0.404 3.596 12 O -0.578 6.578 13 N -0.422 5.422 14 C -0.417 4.417 15 H 0.090 0.910 16 C -0.004 4.004 17 N -0.858 5.858 18 Si 1.113 2.887 19 H -0.290 1.290 20 H -0.244 1.244 21 H -0.289 1.289 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 15.819 -2.001 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.197 4.197 4 C 0.005 3.995 5 H 0.094 0.906 6 C -0.023 4.023 7 N -0.338 5.338 8 C -0.068 4.068 9 C 0.290 3.710 10 O -0.439 6.439 11 C 0.190 3.810 12 O -0.460 6.460 13 N -0.145 5.145 14 C -0.545 4.545 15 H 0.108 0.892 16 C -0.213 4.213 17 N -0.490 5.490 18 Si 0.934 3.066 19 H -0.215 1.215 20 H -0.168 1.168 21 H -0.215 1.215 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.110 13.798 -2.052 14.542 hybrid contribution 0.793 0.524 1.013 1.389 sum 4.903 14.322 -1.039 15.174 Atomic orbital electron populations 1.21924 0.95615 1.02261 1.00999 1.21022 0.96058 0.96511 0.95357 1.21886 1.01514 0.93063 1.03269 1.21931 0.98914 0.81762 0.96856 0.90618 1.22350 1.01906 0.96483 0.81543 1.48108 1.67055 1.04366 1.14263 1.22020 1.02506 0.97487 0.84826 1.20825 0.77031 0.83599 0.89503 1.90610 1.51181 1.66733 1.35383 1.20379 0.87626 0.87322 0.85678 1.90625 1.52705 1.16712 1.85918 1.43737 1.55661 1.09437 1.05682 1.20061 1.11425 1.34403 0.88604 0.89245 1.27624 0.90643 0.99829 1.03212 1.70603 1.31952 1.31576 1.14906 0.82977 0.75917 0.74184 0.73492 1.21532 1.16806 1.21513 0.92699 0.92436 0.93338 0.91233 0.91486 0.91312 0.90900 0.91195 0.83443 0.91781 0.88245 0.89400 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 8.38 71.98 0.60 -4.30 16 2 C -0.07 -2.02 2.26 -10.79 -0.02 -2.04 16 3 C -0.14 -2.51 8.87 71.98 0.64 -1.87 16 4 C 0.11 3.67 2.75 45.00 0.12 3.79 16 5 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 6 C 0.10 2.76 5.18 86.39 0.45 3.21 16 7 N -0.60 -20.64 3.21 -849.33 -2.72 -23.36 16 8 C 0.07 1.75 10.63 127.77 1.36 3.11 16 9 C 0.51 24.62 7.59 87.14 0.66 25.28 16 10 O -0.56 -30.62 16.36 11.57 0.19 -30.43 16 11 C 0.40 22.59 6.06 87.14 0.53 23.11 16 12 O -0.58 -38.72 15.18 11.38 0.17 -38.55 16 13 N -0.42 -20.34 2.30 -615.66 -1.42 -21.76 16 14 C -0.42 -21.47 6.19 84.35 0.52 -20.95 16 15 H 0.09 4.35 7.12 -2.91 -0.02 4.33 16 16 C 0.00 -0.24 3.69 85.14 0.31 0.07 16 17 N -0.86 -51.56 12.08 21.77 0.26 -51.29 16 18 Si 1.11 49.84 29.98 68.60 2.06 51.89 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.24 -9.23 7.11 99.48 0.71 -8.52 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 22 H 0.05 1.55 6.56 -2.39 -0.02 1.54 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 2.09 4.60 -2.38 -0.01 2.08 16 25 H 0.07 2.26 6.81 -2.39 -0.02 2.24 16 26 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.03 6.62 -2.38 -0.02 1.01 16 29 H 0.07 2.09 6.09 -2.38 -0.01 2.07 16 30 H 0.15 2.46 6.72 -2.39 -0.02 2.45 16 31 H 0.06 1.87 6.93 -2.39 -0.02 1.85 16 32 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.26 15.84 6.74 -92.71 -0.63 15.22 16 Total: -1.00 -80.45 269.09 4.96 -75.48 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.25 Total: 8.60 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 5.17 Total: 29.42 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -3.88 Total: -96.42 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: 0.36 Total: -68.98 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.06 Total: 51.89 kcal Total: -80.45 4.96 -75.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.962 kcal (2) G-P(sol) polarization free energy of solvation -80.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds