Wall clock time and date at job start Mon Mar 30 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47038 * 2 1 4 4 C 1.50696 * 109.46853 * 119.99989 * 2 1 3 5 5 H 1.08008 * 120.00327 * 119.99798 * 4 2 1 6 6 C 1.37875 * 120.00270 * 299.99367 * 4 2 1 7 7 N 1.31519 * 119.99818 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00313 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47209 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46725 * 120.00385 * 8 6 4 11 11 H 1.48498 * 109.47561 * 240.00090 * 8 6 4 12 12 N 1.46502 * 109.46758 * 239.99558 * 2 1 3 13 13 C 1.44125 * 116.19607 * 120.12723 * 12 2 1 14 14 C 1.50649 * 113.94374 * 216.71751 * 13 12 2 15 15 C 1.50642 * 113.37530 * 283.95289 * 14 13 12 16 16 N 1.44058 * 113.98362 * 75.83978 * 15 14 13 17 17 C 1.46498 * 116.13673 * 143.38840 * 16 15 14 18 18 C 1.31707 * 127.72903 * 323.41642 * 16 15 14 19 19 O 1.21341 * 115.18165 * 184.66594 * 18 16 15 20 20 C 1.31705 * 116.14703 * 300.00242 * 12 2 1 21 21 O 1.21347 * 115.19514 * 355.53042 * 20 12 2 22 22 H 1.09002 * 109.47175 * 60.00172 * 1 2 3 23 23 H 1.09001 * 109.47590 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47156 * 300.00229 * 1 2 3 25 25 H 0.96996 * 119.99842 * 179.97438 * 7 6 4 26 26 H 1.09004 * 108.72109 * 95.48400 * 13 12 2 27 27 H 1.08998 * 108.49183 * 337.78865 * 13 12 2 28 28 H 1.09002 * 108.68309 * 162.98631 * 14 13 12 29 29 H 1.09004 * 108.68508 * 44.91999 * 14 13 12 30 30 H 1.08998 * 108.58797 * 197.00329 * 15 14 13 31 31 H 1.09007 * 108.58368 * 314.82583 * 15 14 13 32 32 H 1.09001 * 109.46631 * 90.00561 * 17 16 15 33 33 H 1.09001 * 109.47224 * 210.00304 * 17 16 15 34 34 H 1.09004 * 109.47370 * 330.00672 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8298 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1462 -2.2870 3.6039 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0182 -0.6907 -1.1962 13 6 2.8423 0.0861 -2.0876 14 6 2.6200 -0.2178 -3.5463 15 6 3.2510 -1.5117 -3.9901 16 7 2.5326 -2.6877 -3.5704 17 6 2.5076 -3.8022 -4.5208 18 6 1.8952 -2.8800 -2.4340 19 8 1.4398 -3.9940 -2.2795 20 6 1.6543 -1.9495 -1.3287 21 8 1.0265 -2.4066 -0.3962 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7083 1.1610 3.4843 26 1 3.8892 -0.1019 -1.8493 27 1 2.6350 1.1426 -1.9175 28 1 3.0371 0.5957 -4.1399 29 1 1.5473 -0.2705 -3.7326 30 1 3.3131 -1.5127 -5.0783 31 1 4.2619 -1.5620 -3.5855 32 1 3.3614 -4.4547 -4.3381 33 1 1.5845 -4.3677 -4.3936 34 1 2.5584 -3.4136 -5.5380 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:50 Heat of formation + Delta-G solvation = -54.809898 kcal Electronic energy + Delta-G solvation = -18340.278626 eV Core-core repulsion = 15466.847538 eV Total energy + Delta-G solvation = -2873.431088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.47648 -40.28153 -38.41946 -36.13457 -35.11041 -33.10805 -31.04141 -28.97442 -27.33871 -27.08534 -25.45235 -22.89566 -22.45054 -19.80127 -19.17574 -18.22687 -17.69377 -17.03221 -16.91905 -16.16141 -15.86331 -15.60455 -15.24089 -14.83386 -14.54020 -13.95697 -13.78116 -13.46779 -13.27225 -13.09617 -13.04074 -12.73239 -12.48484 -12.38410 -12.22986 -12.09244 -12.03576 -11.66047 -11.15856 -10.62826 -10.25143 -9.89961 -9.46676 -8.13471 -6.19706 0.58666 1.33473 1.38010 1.48404 1.60898 2.35221 2.46791 2.49527 3.14904 3.48512 3.86500 3.92599 4.26269 4.39398 4.51533 4.59099 4.72373 4.80447 4.83282 4.87366 4.94943 4.97525 5.09920 5.23181 5.26601 5.33426 5.59250 5.81472 5.96063 6.10230 6.22903 6.61349 6.78720 6.94289 7.33049 7.48083 8.91233 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.033663 B = 0.008067 C = 0.007339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.574024 B = 3470.206137 C = 3814.293858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.032 0.968 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.266 1.266 11 H -0.285 1.285 12 N -0.565 5.565 13 C 0.090 3.910 14 C -0.146 4.146 15 C 0.095 3.905 16 N -0.574 5.574 17 C 0.068 3.932 18 C 0.506 3.494 19 O -0.566 6.566 20 C 0.484 3.516 21 O -0.537 6.537 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.069 0.931 25 H 0.263 0.737 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.149 0.851 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 1.347 -18.343 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.543 4.543 5 H 0.050 0.950 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.191 1.191 11 H -0.211 1.211 12 N -0.298 5.298 13 C -0.032 4.032 14 C -0.184 4.184 15 C -0.026 4.026 16 N -0.308 5.308 17 C -0.073 4.073 18 C 0.289 3.711 19 O -0.444 6.444 20 C 0.266 3.734 21 O -0.413 6.413 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.959 0.676 -17.656 18.990 hybrid contribution -0.058 -0.575 1.378 1.494 sum 6.901 0.101 -16.279 17.681 Atomic orbital electron populations 1.21952 0.98423 0.99777 1.00131 1.18812 0.91481 0.91850 0.81542 0.93090 1.21343 1.30239 1.10989 0.91729 0.94998 1.25455 0.95709 0.95904 1.01166 1.69936 1.37774 1.23884 1.24048 0.85637 0.78084 0.78565 0.80067 1.20978 1.19077 1.21079 1.47118 1.48377 1.09855 1.24484 1.21123 0.94945 0.96861 0.90253 1.21397 1.02747 0.99567 0.94660 1.21262 0.95286 0.82536 1.03537 1.46848 1.49886 1.18768 1.15262 1.22100 1.02947 0.89428 0.92841 1.18863 0.80342 0.88427 0.83488 1.90697 1.51278 1.23132 1.79340 1.18736 0.83424 0.83194 0.88056 1.90809 1.40262 1.73763 1.36470 0.95118 0.95279 0.91224 0.92729 0.91054 0.88446 0.83353 0.92056 0.84454 0.90176 0.91487 0.92435 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.56 8.82 71.98 0.64 -6.93 16 2 C 0.26 13.44 2.51 44.24 0.11 13.55 16 3 H 0.05 2.55 7.36 -2.39 -0.02 2.53 16 4 C -0.50 -29.63 7.13 25.60 0.18 -29.45 16 5 H 0.03 2.00 7.18 -2.91 -0.02 1.98 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -53.37 11.32 21.45 0.24 -53.12 16 8 Si 0.95 47.30 29.54 68.60 2.03 49.33 16 9 H -0.28 -14.51 7.11 99.48 0.71 -13.81 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 12 N -0.57 -23.57 2.69 -822.18 -2.21 -25.78 16 13 C 0.09 2.40 5.96 86.06 0.51 2.91 16 14 C -0.15 -2.37 5.39 29.07 0.16 -2.21 16 15 C 0.09 1.39 6.00 86.07 0.52 1.91 16 16 N -0.57 -14.71 3.09 -867.35 -2.68 -17.40 16 17 C 0.07 1.31 9.93 127.77 1.27 2.58 16 18 C 0.51 20.20 7.44 86.86 0.65 20.84 16 19 O -0.57 -26.98 14.98 17.79 0.27 -26.71 16 20 C 0.48 22.81 6.73 86.86 0.58 23.39 16 21 O -0.54 -31.73 11.72 17.77 0.21 -31.52 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.03 1.66 5.87 -2.39 -0.01 1.64 16 24 H 0.07 3.94 6.07 -2.38 -0.01 3.93 16 25 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.07 1.75 7.95 -2.38 -0.02 1.73 16 27 H 0.10 2.39 7.38 -2.39 -0.02 2.37 16 28 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.14 0.74 7.42 -2.39 -0.02 0.72 16 31 H 0.08 1.07 7.95 -2.38 -0.02 1.05 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.44 6.97 -2.39 -0.02 1.43 16 34 H 0.12 1.10 7.53 -2.39 -0.02 1.08 16 Total: -1.00 -83.06 272.42 4.01 -79.05 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.10 Total: -1.82 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 5.06 Total: 27.98 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -4.65 Total: -96.30 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: 0.47 Total: -58.24 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -83.06 4.01 -79.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.240 kcal (2) G-P(sol) polarization free energy of solvation -83.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds