Wall clock time and date at job start Mon Mar 30 2020 04:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47078 * 2 1 4 4 C 1.50701 * 109.47057 * 240.00341 * 2 1 3 5 5 H 1.08000 * 119.99521 * 239.99586 * 4 2 1 6 6 C 1.37878 * 120.00227 * 59.72449 * 4 2 1 7 7 N 1.31513 * 119.99780 * 0.27654 * 6 4 2 8 8 Si 1.86793 * 119.99873 * 180.27294 * 6 4 2 9 9 H 1.48501 * 109.47074 * 60.00299 * 8 6 4 10 10 H 1.48511 * 109.46941 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47301 * 299.99741 * 8 6 4 12 12 N 1.46495 * 109.47253 * 120.00017 * 2 1 3 13 13 C 1.44717 * 114.08278 * 65.27957 * 12 2 1 14 14 C 1.51880 * 112.91725 * 192.90722 * 13 12 2 15 15 N 1.45575 * 111.33846 * 294.56322 * 14 13 12 16 16 C 1.46494 * 118.74094 * 251.27368 * 15 14 13 17 17 C 1.32528 * 122.51894 * 71.29000 * 15 14 13 18 18 O 1.21277 * 120.28927 * 184.53817 * 17 15 14 19 19 C 1.50698 * 119.41349 * 4.51905 * 17 15 14 20 20 C 1.31327 * 114.08890 * 245.03717 * 12 2 1 21 21 O 1.21281 * 116.48876 * 357.24506 * 20 12 2 22 22 H 1.09004 * 109.46900 * 53.49189 * 1 2 3 23 23 H 1.09003 * 109.46883 * 173.49044 * 1 2 3 24 24 H 1.08995 * 109.47092 * 293.49341 * 1 2 3 25 25 H 0.96999 * 120.00327 * 180.02562 * 7 6 4 26 26 H 1.09003 * 108.79683 * 313.79330 * 13 12 2 27 27 H 1.09002 * 108.79513 * 72.02416 * 13 12 2 28 28 H 1.09003 * 109.10465 * 55.04176 * 14 13 12 29 29 H 1.09002 * 109.10425 * 174.08669 * 14 13 12 30 30 H 1.09006 * 109.47216 * 89.99625 * 16 15 14 31 31 H 1.08996 * 109.47271 * 210.00099 * 16 15 14 32 32 H 1.09001 * 109.47231 * 330.00243 * 16 15 14 33 33 H 1.08997 * 109.17606 * 56.12858 * 19 17 15 34 34 H 1.09002 * 109.17201 * 175.40229 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6946 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3110 -1.1276 -4.0079 9 1 1.8154 -2.5274 -4.0022 10 1 1.8110 -0.4310 -5.2205 11 1 3.7960 -1.1282 -4.0137 12 7 2.0184 -0.6906 1.1961 13 6 1.6943 -2.1004 1.2377 14 6 1.9287 -2.7210 2.6040 15 7 3.3418 -2.7143 2.9535 16 6 4.0711 -3.9848 2.9632 17 6 3.9938 -1.6030 3.2635 18 8 5.1888 -1.6317 3.4684 19 6 3.2372 -0.3032 3.3588 20 6 2.6741 0.0824 2.0311 21 8 2.8349 1.2347 1.6889 22 1 -0.3633 0.6114 -0.8260 23 1 -0.3633 -1.0211 -0.1165 24 1 -0.3633 0.4097 0.9424 25 1 0.7006 1.1557 -3.4843 26 1 0.6456 -2.2278 0.9694 27 1 2.3081 -2.6236 0.5045 28 1 1.3733 -2.1559 3.3525 29 1 1.5682 -3.7497 2.5951 30 1 4.4960 -4.1675 1.9761 31 1 4.8722 -3.9383 3.7008 32 1 3.3875 -4.7942 3.2198 33 1 2.4250 -0.4135 4.0773 34 1 3.9134 0.4804 3.7006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:01 Heat of formation + Delta-G solvation = -48.575685 kcal Electronic energy + Delta-G solvation = -18235.767295 eV Core-core repulsion = 15362.606543 eV Total energy + Delta-G solvation = -2873.160752 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77981 -38.92118 -36.47273 -35.01612 -32.86113 -31.12145 -29.86236 -28.45433 -26.19866 -25.27979 -23.96528 -21.37946 -19.57299 -18.66502 -17.23715 -16.79119 -16.21801 -15.73595 -15.47813 -14.85792 -14.27384 -14.10264 -13.88889 -13.44109 -12.88149 -12.59244 -12.37359 -12.31563 -12.25870 -11.80750 -11.53723 -11.33572 -11.03262 -10.76221 -10.68542 -10.34661 -10.12183 -9.91355 -9.29954 -8.92697 -8.69838 -8.31723 -7.74748 -6.09104 -4.16308 2.56492 2.98518 3.25970 3.31945 3.33563 3.43039 3.81375 4.37451 4.54895 4.81811 4.96969 5.11546 5.15755 5.24068 5.38186 5.42794 5.50420 5.76363 5.78751 5.95169 6.21861 6.35643 6.71140 6.75635 7.02516 7.21025 7.35429 7.60799 7.72818 7.96062 8.15768 8.17388 8.55619 8.82053 8.95669 9.49034 10.97122 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.008268 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.858819 B = 3385.887276 C = 3723.705409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.229 3.771 3 H 0.083 0.917 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.575 5.575 13 C 0.105 3.895 14 C 0.095 3.905 15 N -0.607 5.607 16 C 0.079 3.921 17 C 0.527 3.473 18 O -0.542 6.542 19 C -0.156 4.156 20 C 0.512 3.488 21 O -0.556 6.556 22 H 0.090 0.910 23 H 0.030 0.970 24 H 0.011 0.989 25 H 0.264 0.736 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 -9.758 10.421 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.128 3.872 3 H 0.100 0.900 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.304 5.304 13 C -0.020 4.020 14 C -0.029 4.029 15 N -0.339 5.339 16 C -0.064 4.064 17 C 0.314 3.686 18 O -0.420 6.420 19 C -0.199 4.199 20 C 0.298 3.702 21 O -0.436 6.436 22 H 0.109 0.891 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.952 -9.099 10.262 13.748 hybrid contribution 0.163 -0.679 -0.933 1.166 sum -0.788 -9.779 9.328 13.537 Atomic orbital electron populations 1.22058 0.98089 1.00124 0.99760 1.19319 0.91048 0.96576 0.80230 0.89982 1.21206 1.32051 1.13075 0.90333 0.92444 1.24867 0.94897 0.94938 0.98905 1.69882 1.36103 1.22479 1.23852 0.86575 0.79283 0.79534 0.82102 1.20265 1.21139 1.20266 1.46739 1.52040 1.08806 1.22824 1.21263 1.02828 0.82037 0.95848 1.21657 0.80655 1.03211 0.97354 1.47126 1.11155 1.07969 1.67657 1.21758 0.97476 0.84388 1.02787 1.19717 0.87506 0.85139 0.76200 1.90711 1.14425 1.86150 1.50687 1.21891 1.02492 0.97233 0.98272 1.18405 0.79763 0.86658 0.85396 1.90723 1.59239 1.19003 1.74610 0.89137 0.95058 0.97018 0.92634 0.89017 0.90713 0.90580 0.88034 0.92423 0.90546 0.91077 0.86967 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.66 37.16 0.32 -2.92 16 2 C 0.23 5.70 2.31 -69.08 -0.16 5.54 16 3 H 0.08 2.42 6.10 -51.93 -0.32 2.11 16 4 C -0.53 -14.02 8.12 -34.44 -0.28 -14.30 16 5 H 0.06 1.50 6.51 -52.49 -0.34 1.16 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.86 11.39 55.43 0.63 -24.23 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.57 -11.75 2.75 -171.07 -0.47 -12.22 16 13 C 0.10 1.64 5.38 -5.56 -0.03 1.61 16 14 C 0.09 1.05 5.74 -5.11 -0.03 1.02 16 15 N -0.61 -8.07 2.92 -183.65 -0.54 -8.61 16 16 C 0.08 0.85 10.27 59.84 0.61 1.47 16 17 C 0.53 8.72 7.08 -11.98 -0.08 8.64 16 18 O -0.54 -10.69 16.56 5.56 0.09 -10.60 16 19 C -0.16 -2.49 5.34 -29.72 -0.16 -2.65 16 20 C 0.51 10.66 7.10 -13.17 -0.09 10.56 16 21 O -0.56 -14.09 15.18 5.56 0.08 -14.01 16 22 H 0.09 2.31 6.26 -51.93 -0.33 1.98 16 23 H 0.03 0.65 6.78 -51.93 -0.35 0.30 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.09 1.36 6.29 -51.93 -0.33 1.04 16 27 H 0.07 1.29 6.82 -51.93 -0.35 0.93 16 28 H 0.08 0.75 7.28 -51.93 -0.38 0.37 16 29 H 0.10 0.77 7.62 -51.93 -0.40 0.37 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.88 7.37 -51.93 -0.38 0.50 16 32 H 0.07 0.52 7.74 -51.93 -0.40 0.12 16 33 H 0.11 1.36 7.54 -51.93 -0.39 0.97 16 34 H 0.13 2.02 8.03 -51.93 -0.42 1.60 16 LS Contribution 273.88 15.07 4.13 4.13 Total: -1.00 -33.52 273.88 -5.45 -38.96 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.36 Total: -0.01 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 0.01 Total: 10.68 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.37 Total: -45.06 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.18 Total: -24.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.52 -5.45 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.612 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds