Wall clock time and date at job start Mon Mar 30 2020 04:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47078 * 2 1 4 4 C 1.50701 * 109.47057 * 240.00341 * 2 1 3 5 5 H 1.08000 * 119.99521 * 239.99586 * 4 2 1 6 6 C 1.37878 * 120.00227 * 59.72449 * 4 2 1 7 7 N 1.31513 * 119.99780 * 0.27654 * 6 4 2 8 8 Si 1.86793 * 119.99873 * 180.27294 * 6 4 2 9 9 H 1.48501 * 109.47074 * 60.00299 * 8 6 4 10 10 H 1.48511 * 109.46941 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47301 * 299.99741 * 8 6 4 12 12 N 1.46495 * 109.47253 * 120.00017 * 2 1 3 13 13 C 1.44717 * 114.08278 * 65.27957 * 12 2 1 14 14 C 1.51880 * 112.91725 * 192.90722 * 13 12 2 15 15 N 1.45575 * 111.33846 * 294.56322 * 14 13 12 16 16 C 1.46494 * 118.74094 * 251.27368 * 15 14 13 17 17 C 1.32528 * 122.51894 * 71.29000 * 15 14 13 18 18 O 1.21277 * 120.28927 * 184.53817 * 17 15 14 19 19 C 1.50698 * 119.41349 * 4.51905 * 17 15 14 20 20 C 1.31327 * 114.08890 * 245.03717 * 12 2 1 21 21 O 1.21281 * 116.48876 * 357.24506 * 20 12 2 22 22 H 1.09004 * 109.46900 * 53.49189 * 1 2 3 23 23 H 1.09003 * 109.46883 * 173.49044 * 1 2 3 24 24 H 1.08995 * 109.47092 * 293.49341 * 1 2 3 25 25 H 0.96999 * 120.00327 * 180.02562 * 7 6 4 26 26 H 1.09003 * 108.79683 * 313.79330 * 13 12 2 27 27 H 1.09002 * 108.79513 * 72.02416 * 13 12 2 28 28 H 1.09003 * 109.10465 * 55.04176 * 14 13 12 29 29 H 1.09002 * 109.10425 * 174.08669 * 14 13 12 30 30 H 1.09006 * 109.47216 * 89.99625 * 16 15 14 31 31 H 1.08996 * 109.47271 * 210.00099 * 16 15 14 32 32 H 1.09001 * 109.47231 * 330.00243 * 16 15 14 33 33 H 1.08997 * 109.17606 * 56.12858 * 19 17 15 34 34 H 1.09002 * 109.17201 * 175.40229 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6946 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3110 -1.1276 -4.0079 9 1 1.8154 -2.5274 -4.0022 10 1 1.8110 -0.4310 -5.2205 11 1 3.7960 -1.1282 -4.0137 12 7 2.0184 -0.6906 1.1961 13 6 1.6943 -2.1004 1.2377 14 6 1.9287 -2.7210 2.6040 15 7 3.3418 -2.7143 2.9535 16 6 4.0711 -3.9848 2.9632 17 6 3.9938 -1.6030 3.2635 18 8 5.1888 -1.6317 3.4684 19 6 3.2372 -0.3032 3.3588 20 6 2.6741 0.0824 2.0311 21 8 2.8349 1.2347 1.6889 22 1 -0.3633 0.6114 -0.8260 23 1 -0.3633 -1.0211 -0.1165 24 1 -0.3633 0.4097 0.9424 25 1 0.7006 1.1557 -3.4843 26 1 0.6456 -2.2278 0.9694 27 1 2.3081 -2.6236 0.5045 28 1 1.3733 -2.1559 3.3525 29 1 1.5682 -3.7497 2.5951 30 1 4.4960 -4.1675 1.9761 31 1 4.8722 -3.9383 3.7008 32 1 3.3875 -4.7942 3.2198 33 1 2.4250 -0.4135 4.0773 34 1 3.9134 0.4804 3.7006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:01 Heat of formation + Delta-G solvation = -73.126810 kcal Electronic energy + Delta-G solvation = -18236.831912 eV Core-core repulsion = 15362.606543 eV Total energy + Delta-G solvation = -2874.225369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.18045 -40.41058 -37.89654 -36.59317 -34.68974 -32.61100 -31.26494 -30.02249 -27.32750 -27.22849 -25.23861 -23.17243 -20.83235 -20.23050 -18.58262 -18.31423 -17.80312 -17.28054 -17.00470 -16.43767 -15.82008 -15.66776 -15.18771 -14.76893 -14.56000 -13.87957 -13.72344 -13.61214 -13.39444 -13.36307 -12.97414 -12.88233 -12.78378 -12.50224 -12.37895 -12.17632 -12.02303 -11.35757 -11.07960 -10.72967 -10.33266 -9.84268 -9.45996 -8.14915 -6.29753 1.24038 1.39839 1.43007 1.49620 1.71963 2.08301 2.25539 2.45670 3.14331 3.34625 3.64827 3.93247 4.05142 4.10742 4.42493 4.53825 4.58124 4.66596 4.71939 4.89020 4.91853 4.95413 5.00772 5.08698 5.32144 5.49924 5.54441 5.75280 6.01715 6.15264 6.23780 6.77664 6.87299 6.96228 7.29477 7.43038 8.90288 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.008268 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.858819 B = 3385.887276 C = 3723.705409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.231 3.769 3 H 0.026 0.974 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.572 5.572 13 C 0.096 3.904 14 C 0.099 3.901 15 N -0.599 5.599 16 C 0.074 3.926 17 C 0.521 3.479 18 O -0.583 6.583 19 C -0.142 4.142 20 C 0.504 3.496 21 O -0.614 6.614 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.160 0.840 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -12.702 11.415 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 H 0.044 0.956 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.299 5.299 13 C -0.026 4.026 14 C -0.023 4.023 15 N -0.329 5.329 16 C -0.068 4.068 17 C 0.308 3.692 18 O -0.464 6.464 19 C -0.185 4.185 20 C 0.292 3.708 21 O -0.498 6.498 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.171 0.829 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.177 0.823 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.001 -12.121 11.269 16.671 hybrid contribution 0.474 0.235 -1.255 1.362 sum -1.527 -11.886 10.014 15.618 Atomic orbital electron populations 1.21812 0.96414 1.00873 0.99316 1.18919 0.92261 0.94134 0.81888 0.95632 1.21478 1.31926 1.13048 0.91235 0.92398 1.25676 0.95102 0.95623 1.01866 1.70032 1.37163 1.23767 1.24386 0.85589 0.78079 0.79323 0.78485 1.18224 1.20954 1.20969 1.46794 1.51369 1.10623 1.21136 1.21578 1.03209 0.79005 0.98829 1.21889 0.79491 1.06171 0.94778 1.47250 1.12182 1.07870 1.65620 1.21972 0.98350 0.84356 1.02081 1.19774 0.87037 0.86029 0.76312 1.90696 1.16047 1.86808 1.52874 1.21748 1.03627 0.97143 0.95951 1.19211 0.78962 0.85884 0.86779 1.90708 1.61348 1.21645 1.76142 0.92129 0.92899 0.95499 0.92709 0.87697 0.92345 0.88132 0.82886 0.93329 0.91595 0.86421 0.82278 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.66 71.98 0.62 -5.10 16 2 C 0.23 11.71 2.31 44.25 0.10 11.81 16 3 H 0.03 1.60 6.10 -2.39 -0.01 1.59 16 4 C -0.54 -28.84 8.12 25.60 0.21 -28.64 16 5 H 0.06 3.02 6.51 -2.91 -0.02 3.00 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -52.56 11.39 21.45 0.24 -52.31 16 8 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 9 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 N -0.57 -23.00 2.75 -815.41 -2.24 -25.24 16 13 C 0.10 2.75 5.38 86.34 0.46 3.22 16 14 C 0.10 1.70 5.74 86.18 0.49 2.19 16 15 N -0.60 -13.83 2.92 -854.57 -2.49 -16.33 16 16 C 0.07 1.34 10.27 127.77 1.31 2.65 16 17 C 0.52 16.32 7.08 88.00 0.62 16.95 16 18 O -0.58 -22.71 16.56 -3.02 -0.05 -22.76 16 19 C -0.14 -4.34 5.34 28.66 0.15 -4.18 16 20 C 0.50 21.01 7.10 87.74 0.62 21.63 16 21 O -0.61 -32.55 15.18 -3.03 -0.05 -32.60 16 22 H 0.06 3.14 6.26 -2.39 -0.01 3.13 16 23 H 0.05 2.12 6.78 -2.39 -0.02 2.11 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.11 2.74 6.29 -2.39 -0.01 2.73 16 27 H 0.06 1.88 6.82 -2.39 -0.02 1.86 16 28 H 0.10 1.36 7.28 -2.39 -0.02 1.35 16 29 H 0.15 1.20 7.62 -2.39 -0.02 1.18 16 30 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 1.37 7.37 -2.39 -0.02 1.35 16 32 H 0.12 1.05 7.74 -2.39 -0.02 1.03 16 33 H 0.16 3.26 7.54 -2.39 -0.02 3.24 16 34 H 0.12 3.82 8.03 -2.39 -0.02 3.80 16 Total: -1.00 -77.90 273.88 3.60 -74.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.11 Total: 8.09 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 5.05 Total: 21.92 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -4.49 Total: -93.88 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.10 Total: -55.36 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -77.90 3.60 -74.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.173 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds