Wall clock time and date at job start Mon Mar 30 2020 04:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47092 * 2 1 4 4 C 1.47067 * 111.00448 * 170.00029 * 3 2 1 5 5 C 1.50653 * 109.24767 * 180.45346 * 4 3 2 6 6 O 1.21233 * 119.66824 * 151.16123 * 5 4 3 7 7 N 1.34448 * 120.65735 * 331.44178 * 5 4 3 8 8 C 1.46499 * 119.32090 * 180.17442 * 7 5 4 9 9 H 1.08999 * 109.47116 * 0.02562 * 8 7 5 10 10 C 1.53002 * 109.47187 * 119.99593 * 8 7 5 11 11 C 1.50696 * 109.46967 * 239.99604 * 8 7 5 12 12 H 1.07997 * 120.00335 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00016 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99832 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00439 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.46801 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47376 * 120.00065 * 15 13 11 18 18 H 1.48498 * 109.47245 * 240.00509 * 15 13 11 19 19 C 1.34445 * 121.36139 * 359.90463 * 7 5 4 20 20 O 1.21221 * 119.67418 * 179.81900 * 19 7 5 21 21 C 1.47078 * 110.99739 * 293.13391 * 3 2 1 22 22 H 1.09005 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47697 * 300.00132 * 1 2 3 24 24 H 1.09002 * 109.47062 * 60.00437 * 1 2 3 25 25 H 1.09003 * 109.47354 * 240.00016 * 2 1 3 26 26 H 1.08998 * 109.47459 * 119.99869 * 2 1 3 27 27 H 1.09003 * 109.51063 * 60.51891 * 4 3 2 28 28 H 1.09001 * 109.50845 * 300.38605 * 4 3 2 29 29 H 1.08999 * 109.46751 * 60.00194 * 10 8 7 30 30 H 1.08990 * 109.47343 * 179.97438 * 10 8 7 31 31 H 1.09002 * 109.46759 * 300.00165 * 10 8 7 32 32 H 0.97003 * 120.00268 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.50877 * 299.47295 * 21 3 2 34 34 H 1.08994 * 109.50753 * 59.61030 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4701 1.4313 0.2384 5 6 3.9273 2.8668 0.2415 6 8 4.8925 3.1877 0.9011 7 7 3.2722 3.7965 -0.4756 8 6 3.7445 5.1831 -0.4544 9 1 4.6223 5.2582 0.1874 10 6 4.1129 5.6181 -1.8743 11 6 2.6543 6.0770 0.0779 12 1 1.7047 5.6545 0.3714 13 6 2.8694 7.4341 0.1910 14 7 4.0259 7.9486 -0.1660 15 14 1.5183 8.5422 0.8515 16 1 0.3231 7.7239 1.1790 17 1 1.9978 9.2314 2.0763 18 1 1.1596 9.5520 -0.1765 19 6 2.1958 3.4789 -1.2159 20 8 1.6263 4.3423 -1.8481 21 6 1.6867 2.0617 -1.2627 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9865 0.8865 -0.5519 28 1 3.6953 0.9755 1.2026 29 1 3.2354 5.5429 -2.5165 30 1 4.4639 6.6498 -1.8586 31 1 4.9015 4.9715 -2.2592 32 1 4.1771 8.9035 -0.0867 33 1 2.1553 1.5338 -2.0932 34 1 0.6052 2.0677 -1.3982 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:43 Heat of formation + Delta-G solvation = -77.979060 kcal Electronic energy + Delta-G solvation = -18130.722155 eV Core-core repulsion = 15256.286376 eV Total energy + Delta-G solvation = -2874.435778 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.45918 -39.67013 -38.54757 -36.59428 -34.89958 -32.61521 -30.94216 -29.91309 -27.41843 -26.60543 -24.33762 -23.13612 -22.32065 -19.42248 -19.07936 -18.45084 -17.66865 -17.11715 -16.61556 -16.20822 -16.11712 -15.47536 -15.33584 -14.73509 -14.43969 -14.21849 -14.13039 -13.71033 -13.35252 -13.01331 -12.95117 -12.81266 -12.75494 -12.47970 -12.38256 -12.25543 -11.73611 -11.49778 -11.12174 -10.89510 -10.50102 -10.27990 -9.54087 -8.21916 -6.34127 0.67294 1.34715 1.36010 1.48217 1.81093 1.96898 2.38146 2.75436 3.01904 3.09009 3.66769 3.88952 4.23546 4.25958 4.44247 4.50889 4.60791 4.64360 4.71488 4.74963 4.87433 4.96425 5.01538 5.12920 5.37143 5.42492 5.55379 5.68280 5.80693 5.87489 5.99952 6.34461 6.63821 6.82245 6.99698 7.33508 8.84560 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029025 B = 0.008015 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.456245 B = 3492.767786 C = 3828.979030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 N -0.547 5.547 4 C 0.047 3.953 5 C 0.512 3.488 6 O -0.551 6.551 7 N -0.561 5.561 8 C 0.249 3.751 9 H 0.030 0.970 10 C -0.137 4.137 11 C -0.523 4.523 12 H 0.044 0.956 13 C 0.014 3.986 14 N -0.917 5.917 15 Si 0.966 3.034 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.512 3.488 20 O -0.518 6.518 21 C 0.042 3.958 22 H 0.083 0.917 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.110 0.890 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -18.600 -1.895 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.073 4.073 3 N -0.276 5.276 4 C -0.082 4.082 5 C 0.304 3.696 6 O -0.427 6.427 7 N -0.301 5.301 8 C 0.149 3.851 9 H 0.048 0.952 10 C -0.196 4.196 11 C -0.561 4.561 12 H 0.062 0.938 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.791 3.209 16 H -0.198 1.198 17 H -0.198 1.198 18 H -0.199 1.199 19 C 0.303 3.697 20 O -0.391 6.391 21 C -0.088 4.088 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.159 0.841 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.241 -17.561 -1.517 18.389 hybrid contribution 0.103 0.897 -0.253 0.938 sum -5.137 -16.664 -1.770 17.527 Atomic orbital electron populations 1.21838 0.94151 1.02870 1.02139 1.22290 0.96692 0.84868 1.03464 1.62512 1.12221 1.20005 1.32866 1.22536 0.89166 0.89139 1.07407 1.21885 0.81641 0.89513 0.76591 1.90679 1.28388 1.82561 1.41097 1.47194 1.28166 1.12310 1.42463 1.18824 0.95185 0.76090 0.95033 0.95165 1.21917 0.98685 1.02270 0.96698 1.21285 0.99146 0.92913 1.42776 0.93787 1.25671 0.98183 0.99118 0.95567 1.69990 1.24097 1.13106 1.48421 0.85389 0.78916 0.78408 0.78219 1.19836 1.19845 1.19944 1.21643 0.78414 0.92520 0.77161 1.90691 1.55496 1.51182 1.41745 1.22608 1.04859 0.87810 0.93505 0.89842 0.93125 0.92659 0.91637 0.88356 0.86929 0.84103 0.93498 0.90907 0.95710 0.92433 0.87253 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.86 71.98 0.71 -1.23 16 2 C 0.05 0.66 5.67 86.30 0.49 1.15 16 3 N -0.55 -12.00 4.76 -904.61 -4.31 -16.31 16 4 C 0.05 1.10 5.58 85.51 0.48 1.58 16 5 C 0.51 20.09 7.61 87.69 0.67 20.76 16 6 O -0.55 -26.09 16.31 -2.88 -0.05 -26.14 16 7 N -0.56 -25.37 2.49 -738.20 -1.84 -27.21 16 8 C 0.25 13.94 2.52 44.25 0.11 14.05 16 9 H 0.03 1.91 6.81 -2.39 -0.02 1.89 16 10 C -0.14 -7.34 8.88 71.98 0.64 -6.71 16 11 C -0.52 -31.48 7.53 25.60 0.19 -31.29 16 12 H 0.04 2.72 7.45 -2.91 -0.02 2.69 16 13 C 0.01 0.81 5.30 84.65 0.45 1.26 16 14 N -0.92 -55.48 11.32 21.45 0.24 -55.23 16 15 Si 0.97 46.90 29.54 68.60 2.03 48.92 16 16 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 19 C 0.51 20.49 6.88 87.70 0.60 21.09 16 20 O -0.52 -25.00 14.00 -2.85 -0.04 -25.04 16 21 C 0.04 1.03 5.34 85.51 0.46 1.49 16 22 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.73 6.57 -2.39 -0.02 0.72 16 25 H 0.07 0.56 8.11 -2.39 -0.02 0.54 16 26 H 0.10 0.99 8.06 -2.39 -0.02 0.97 16 27 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.14 2.72 8.12 -2.39 -0.02 2.70 16 29 H 0.05 2.51 6.09 -2.39 -0.01 2.50 16 30 H 0.07 4.22 6.07 -2.39 -0.01 4.21 16 31 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 2.95 6.49 -2.39 -0.02 2.93 16 Total: -1.00 -77.55 277.71 1.93 -75.63 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.10 Total: 3.22 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 4.80 Total: 22.16 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -5.91 Total: -98.76 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.09 Total: -51.17 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.55 1.93 -75.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.350 kcal (2) G-P(sol) polarization free energy of solvation -77.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds