Wall clock time and date at job start Mon Mar 30 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 C 1.53000 * 109.47537 * 120.00227 * 2 1 3 5 5 H 1.09004 * 110.65157 * 298.53792 * 4 2 1 6 6 N 1.47316 * 110.59796 * 61.44876 * 4 2 1 7 7 C 1.34529 * 106.61532 * 118.30031 * 6 4 2 8 8 O 1.21538 * 123.77073 * 180.22169 * 7 6 4 9 9 N 1.33791 * 112.45612 * 0.23091 * 7 6 4 10 10 C 1.46507 * 124.17421 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.46961 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47168 * 59.97338 * 10 9 7 13 13 C 1.50693 * 109.46992 * 299.97396 * 10 9 7 14 14 H 1.07995 * 120.00254 * 34.98715 * 13 10 9 15 15 C 1.37882 * 119.99733 * 214.98487 * 13 10 9 16 16 N 1.31513 * 119.99829 * 184.90076 * 15 13 10 17 17 Si 1.86798 * 119.99963 * 4.90586 * 15 13 10 18 18 H 1.48499 * 109.47314 * 84.80806 * 17 15 13 19 19 H 1.48499 * 109.46921 * 204.80338 * 17 15 13 20 20 H 1.48501 * 109.47387 * 324.80538 * 17 15 13 21 21 C 1.34765 * 111.64768 * 359.97438 * 9 7 6 22 22 O 1.21240 * 127.15683 * 179.97438 * 21 9 7 23 23 H 1.08997 * 109.47310 * 59.99330 * 1 2 3 24 24 H 1.08997 * 109.46899 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46588 * 299.99794 * 1 2 3 26 26 H 1.08997 * 109.46588 * 240.00206 * 2 1 3 27 27 H 1.08997 * 109.46911 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47049 * 300.00646 * 3 2 1 29 29 H 1.09000 * 109.46852 * 60.00223 * 3 2 1 30 30 H 0.96998 * 126.68843 * 298.56751 * 6 4 2 31 31 H 1.09001 * 109.47205 * 54.86799 * 12 10 9 32 32 H 1.08996 * 109.47016 * 174.86436 * 12 10 9 33 33 H 1.08999 * 109.47149 * 294.87340 * 12 10 9 34 34 H 0.97007 * 119.99604 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0402 -0.7213 1.2492 5 1 1.7089 -0.2078 2.1518 6 7 1.5916 -2.1245 1.2569 7 6 2.7020 -2.8835 1.2317 8 8 2.6897 -4.0988 1.2263 9 7 3.8214 -2.1509 1.2134 10 6 5.1734 -2.7146 1.1838 11 1 5.9041 -1.9058 1.1731 12 6 5.3417 -3.5707 -0.0731 13 6 5.3881 -3.5693 2.4062 14 1 4.5696 -4.1440 2.8138 15 6 6.6295 -3.6177 3.0042 16 7 6.8428 -4.4361 4.0113 17 14 8.0084 -2.5207 2.3839 18 1 7.9048 -1.1852 3.0248 19 1 9.3183 -3.1324 2.7235 20 1 7.8983 -2.3726 0.9104 21 6 3.5518 -0.8306 1.2243 22 8 4.3518 0.0803 1.2134 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.6743 -2.4396 1.2728 31 1 5.0975 -2.9758 -0.9532 32 1 6.3734 -3.9154 -0.1424 33 1 4.6740 -4.4305 -0.0191 34 1 7.7163 -4.4704 4.4317 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:49 Heat of formation + Delta-G solvation = -54.317232 kcal Electronic energy + Delta-G solvation = -18176.023180 eV Core-core repulsion = 15302.613455 eV Total energy + Delta-G solvation = -2873.409725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82918 -37.97785 -36.64150 -35.14601 -33.97782 -32.24434 -30.07726 -27.42523 -26.60186 -25.33974 -22.71707 -22.11549 -20.43498 -19.24026 -17.53113 -17.07817 -16.45742 -15.69564 -15.15019 -14.89419 -14.64198 -14.02174 -13.72860 -13.48980 -13.00204 -12.75459 -12.54409 -12.46806 -12.27992 -11.83366 -11.69609 -11.33401 -11.19047 -11.00378 -10.78946 -10.73809 -10.04702 -9.90967 -9.54881 -9.23938 -9.04255 -8.66288 -8.56540 -6.19423 -4.22076 2.19843 2.93166 3.26444 3.31754 3.34803 3.62089 3.79751 4.31087 4.39833 4.60128 4.75348 5.09229 5.14694 5.23645 5.45087 5.53978 5.69396 5.76608 5.83019 5.95648 6.11333 6.20884 6.28286 6.31293 6.46098 6.60772 6.95450 7.17391 7.25306 7.45195 7.88476 8.04741 8.40040 8.86316 8.94650 9.39273 10.92348 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.008507 C = 0.007479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.995076 B = 3290.578965 C = 3742.677251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.155 4.155 4 C 0.095 3.905 5 H 0.117 0.883 6 N -0.738 5.738 7 C 0.702 3.298 8 O -0.529 6.529 9 N -0.550 5.550 10 C 0.235 3.765 11 H 0.062 0.938 12 C -0.152 4.152 13 C -0.523 4.523 14 H 0.089 0.911 15 C 0.080 3.920 16 N -0.883 5.883 17 Si 0.869 3.131 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.519 3.481 22 O -0.485 6.485 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.430 0.570 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 10.059 -7.842 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.212 4.212 4 C -0.015 4.015 5 H 0.135 0.865 6 N -0.404 5.404 7 C 0.403 3.597 8 O -0.402 6.402 9 N -0.294 5.294 10 C 0.137 3.863 11 H 0.080 0.920 12 C -0.210 4.210 13 C -0.561 4.561 14 H 0.107 0.893 15 C -0.124 4.124 16 N -0.519 5.519 17 Si 0.695 3.305 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.187 1.187 21 C 0.305 3.695 22 O -0.357 6.357 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.273 0.727 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.462 9.737 -7.699 16.234 hybrid contribution 0.351 0.385 -0.077 0.527 sum -10.110 10.122 -7.775 16.283 Atomic orbital electron populations 1.21818 0.94041 1.01986 1.02336 1.21253 0.96632 0.96973 0.96263 1.21924 1.03298 0.94127 1.01887 1.22123 0.93206 0.84813 1.01364 0.86502 1.45648 1.08251 1.05626 1.80884 1.15980 0.80738 0.85659 0.77321 1.90962 1.85448 1.10137 1.53618 1.47273 1.09917 1.07271 1.64971 1.19530 0.76108 0.94048 0.96641 0.91981 1.22251 1.02330 1.00785 0.95661 1.21136 0.98523 1.26648 1.09760 0.89259 1.24982 0.98229 0.94975 0.94243 1.69889 1.23528 1.35977 1.22539 0.86986 0.81830 0.81520 0.80183 1.19508 1.20845 1.18717 1.20750 0.90352 0.83396 0.74987 1.90699 1.54849 1.42594 1.47585 0.92018 0.92464 0.92205 0.90343 0.90565 0.92294 0.92260 0.72655 0.95669 0.91998 0.91254 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.06 37.16 0.34 -0.80 16 2 C -0.09 -0.98 2.70 -90.62 -0.25 -1.23 16 3 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 4 C 0.09 1.28 3.20 -68.21 -0.22 1.06 16 5 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 6 N -0.74 -10.72 5.86 -59.19 -0.35 -11.06 16 7 C 0.70 14.37 7.98 -88.02 -0.70 13.67 16 8 O -0.53 -12.76 15.29 5.33 0.08 -12.68 16 9 N -0.55 -11.96 2.50 -114.83 -0.29 -12.25 16 10 C 0.23 5.80 2.42 -69.08 -0.17 5.63 16 11 H 0.06 1.56 4.79 -51.93 -0.25 1.32 16 12 C -0.15 -3.40 9.10 37.16 0.34 -3.06 16 13 C -0.52 -15.01 8.64 -34.44 -0.30 -15.30 16 14 H 0.09 2.87 7.14 -52.49 -0.37 2.50 16 15 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 16 N -0.88 -26.86 13.96 55.43 0.77 -26.09 16 17 Si 0.87 21.42 26.99 -169.99 -4.59 16.84 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.16 6.82 56.52 0.39 -5.77 16 21 C 0.52 9.81 7.44 -10.56 -0.08 9.74 16 22 O -0.48 -10.05 15.58 5.59 0.09 -9.96 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.43 7.21 -51.93 -0.37 0.06 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.99 6.11 -51.93 -0.32 0.68 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.43 4.86 8.25 -40.82 -0.34 4.52 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.63 6.87 -51.93 -0.36 1.27 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -33.16 279.99 -5.40 -38.56 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.54 Total: 1.79 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -0.80 Total: 10.64 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.14 Total: -49.40 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.17 Total: -22.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.84 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.16 -5.40 -38.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.759 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds