Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 N 1.46497 * 109.47145 * 119.99594 * 2 1 3 5 5 C 1.44715 * 114.08994 * 305.40321 * 4 2 1 6 6 C 1.51877 * 112.91861 * 192.90898 * 5 4 2 7 7 N 1.45572 * 111.28138 * 294.58981 * 6 5 4 8 8 C 1.37096 * 118.73250 * 251.21795 * 7 6 5 9 9 H 1.08005 * 119.99682 * 208.75320 * 8 7 6 10 10 C 1.38948 * 120.00388 * 28.75983 * 8 7 6 11 11 N 1.31413 * 119.99622 * 17.13668 * 10 8 7 12 12 Si 1.86796 * 120.00292 * 197.13925 * 10 8 7 13 13 H 1.48497 * 109.47347 * 89.99665 * 12 10 8 14 14 H 1.48501 * 109.47295 * 209.99781 * 12 10 8 15 15 H 1.48509 * 109.47274 * 329.99656 * 12 10 8 16 16 C 1.32428 * 122.59692 * 71.33905 * 7 6 5 17 17 O 1.21292 * 120.31691 * 184.47963 * 16 7 6 18 18 C 1.50695 * 119.38901 * 4.43362 * 16 7 6 19 19 C 1.31332 * 114.08650 * 125.37628 * 4 2 1 20 20 O 1.21282 * 116.48639 * 357.22634 * 19 4 2 21 21 H 1.09004 * 109.46914 * 300.00032 * 1 2 3 22 22 H 1.08996 * 109.46871 * 60.00413 * 1 2 3 23 23 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47347 * 239.99573 * 2 1 3 25 25 H 1.09003 * 109.46636 * 175.88379 * 3 2 1 26 26 H 1.09000 * 109.46970 * 295.87619 * 3 2 1 27 27 H 1.08997 * 109.47085 * 55.88252 * 3 2 1 28 28 H 1.08994 * 108.79788 * 72.01488 * 5 4 2 29 29 H 1.09002 * 108.70137 * 313.72843 * 5 4 2 30 30 H 1.08998 * 109.10695 * 55.03187 * 6 5 4 31 31 H 1.08998 * 109.10654 * 174.14009 * 6 5 4 32 32 H 0.96999 * 119.99646 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.17637 * 175.40585 * 18 16 7 34 34 H 1.09002 * 109.17571 * 56.18368 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.4937 -0.1639 2.4378 6 6 2.2384 -0.6753 3.6587 7 7 2.0580 -2.1101 3.8250 8 6 1.2778 -2.5610 4.8582 9 1 1.4723 -3.5271 5.3001 10 6 0.2366 -1.7751 5.3369 11 7 -0.2204 -0.7781 4.6129 12 14 -0.5133 -2.1357 7.0092 13 1 0.2141 -1.3703 8.0534 14 1 -1.9431 -1.7346 7.0075 15 1 -0.4072 -3.5888 7.2965 16 6 2.6198 -2.9980 3.0188 17 8 2.3771 -4.1796 3.1453 18 6 3.5627 -2.5266 1.9420 19 6 2.8515 -1.6741 0.9447 20 8 3.0658 -1.9159 -0.2243 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1276 1.4434 0.0738 26 1 1.7383 1.9346 -0.9246 27 1 1.6177 1.9772 0.8508 28 1 0.4443 -0.4454 2.5231 29 1 1.5641 0.9236 2.4136 30 1 3.3008 -0.4601 3.5447 31 1 1.8640 -0.1634 4.5453 32 1 -0.9470 -0.2292 4.9472 33 1 3.9881 -3.3923 1.4344 34 1 4.3669 -1.9491 2.3979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = -48.765829 kcal Electronic energy + Delta-G solvation = -18562.799043 eV Core-core repulsion = 15689.630046 eV Total energy + Delta-G solvation = -2873.168998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58657 -38.40320 -36.36064 -34.88140 -32.59671 -31.24551 -29.69529 -28.58227 -26.99140 -24.80851 -23.44268 -21.42448 -19.51386 -18.32996 -17.25258 -16.59058 -16.30434 -15.47033 -14.99844 -14.26124 -14.10434 -13.87397 -13.78333 -13.18265 -12.95942 -12.63175 -12.28341 -12.11490 -11.90048 -11.64860 -11.38521 -11.25584 -11.18831 -10.92724 -10.82605 -10.44790 -10.41042 -10.29983 -9.27995 -9.12455 -8.46772 -8.19527 -7.79406 -6.50162 -4.09687 3.02369 3.11639 3.19322 3.24694 3.50924 3.84148 4.04631 4.75647 4.89584 5.12272 5.32061 5.37047 5.48089 5.52061 5.68184 5.71638 5.81187 5.88644 5.92174 6.02594 6.11639 6.21007 6.30601 6.49806 6.56941 6.70868 6.88079 7.03515 7.48433 8.05437 8.15385 8.32294 8.63485 9.02778 9.25494 9.80277 10.54510 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.009824 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.303519 B = 2849.576048 C = 3527.754364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 C -0.156 4.156 4 N -0.580 5.580 5 C 0.099 3.901 6 C 0.122 3.878 7 N -0.435 5.435 8 C -0.314 4.314 9 H 0.099 0.901 10 C 0.035 3.965 11 N -0.880 5.880 12 Si 0.927 3.073 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.461 3.539 17 O -0.578 6.578 18 C -0.151 4.151 19 C 0.529 3.471 20 O -0.578 6.578 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.112 0.888 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.114 0.886 32 H 0.270 0.730 33 H 0.116 0.884 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 8.113 -3.254 9.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 C -0.214 4.214 4 N -0.310 5.310 5 C -0.023 4.023 6 C -0.003 4.003 7 N -0.153 5.153 8 C -0.441 4.441 9 H 0.117 0.883 10 C -0.168 4.168 11 N -0.519 5.519 12 Si 0.754 3.246 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.247 3.753 17 O -0.462 6.462 18 C -0.194 4.194 19 C 0.317 3.683 20 O -0.460 6.460 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.090 7.539 -3.658 8.636 hybrid contribution -0.456 0.151 0.895 1.015 sum 1.634 7.690 -2.763 8.333 Atomic orbital electron populations 1.22085 0.94862 1.02543 1.02033 1.21351 0.94507 0.93073 0.91625 1.22099 1.01258 0.96111 1.01944 1.46806 1.43447 1.31892 1.08855 1.21761 1.02242 0.97167 0.81173 1.21063 0.96327 0.83609 0.99267 1.42919 1.42605 1.04149 1.25659 1.19744 1.10361 1.05454 1.08554 0.88312 1.25312 0.95309 0.96556 0.99591 1.69849 1.26259 1.19954 1.35818 0.85903 0.77904 0.79200 0.81610 1.20296 1.20936 1.19372 1.19101 0.85856 0.87000 0.83321 1.90572 1.65911 1.16859 1.72835 1.21703 0.99395 1.01276 0.97000 1.18888 0.79369 0.80056 0.89962 1.90613 1.65141 1.69969 1.20315 0.91739 0.92153 0.92365 0.87022 0.92654 0.91916 0.92255 0.86824 0.91478 0.94396 0.86846 0.91961 0.86571 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.84 37.16 0.33 -2.03 16 2 C 0.10 1.58 2.92 -67.93 -0.20 1.38 16 3 C -0.16 -2.00 9.05 37.16 0.34 -1.67 16 4 N -0.58 -10.83 2.75 -169.77 -0.47 -11.29 16 5 C 0.10 1.83 4.71 -5.57 -0.03 1.81 16 6 C 0.12 2.45 4.77 -5.11 -0.02 2.43 16 7 N -0.44 -10.52 2.64 -116.77 -0.31 -10.83 16 8 C -0.31 -8.22 8.96 -14.93 -0.13 -8.36 16 9 H 0.10 2.76 7.51 -52.48 -0.39 2.37 16 10 C 0.04 0.86 4.80 -17.47 -0.08 0.78 16 11 N -0.88 -20.81 9.35 55.50 0.52 -20.29 16 12 Si 0.93 19.43 29.59 -169.99 -5.03 14.40 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 C 0.46 11.39 7.05 -12.02 -0.08 11.30 16 17 O -0.58 -16.58 16.73 5.55 0.09 -16.49 16 18 C -0.15 -3.04 5.33 -29.74 -0.16 -3.20 16 19 C 0.53 10.91 7.10 -13.20 -0.09 10.81 16 20 O -0.58 -12.90 15.18 5.56 0.08 -12.82 16 21 H 0.06 0.97 6.85 -51.93 -0.36 0.62 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.11 1.98 6.10 -51.93 -0.32 1.67 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.72 6.67 -51.93 -0.35 0.38 16 28 H 0.11 2.44 5.43 -51.93 -0.28 2.16 16 29 H 0.07 1.07 6.23 -51.93 -0.32 0.74 16 30 H 0.04 0.67 7.28 -51.93 -0.38 0.29 16 31 H 0.11 2.37 6.17 -51.93 -0.32 2.05 16 32 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 33 H 0.12 2.30 8.03 -51.93 -0.42 1.88 16 34 H 0.10 1.73 7.54 -51.93 -0.39 1.34 16 LS Contribution 269.78 15.07 4.07 4.07 Total: -1.00 -30.00 269.78 -5.53 -35.53 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.35 Total: 4.47 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -0.14 Total: 13.26 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.26 Total: -42.42 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: 0.18 Total: -29.30 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.00 -5.53 -35.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.235 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds