Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 N 1.46497 * 109.47145 * 119.99594 * 2 1 3 5 5 C 1.44715 * 114.08994 * 305.40321 * 4 2 1 6 6 C 1.51877 * 112.91861 * 192.90898 * 5 4 2 7 7 N 1.45572 * 111.28138 * 294.58981 * 6 5 4 8 8 C 1.37096 * 118.73250 * 251.21795 * 7 6 5 9 9 H 1.08005 * 119.99682 * 208.75320 * 8 7 6 10 10 C 1.38948 * 120.00388 * 28.75983 * 8 7 6 11 11 N 1.31413 * 119.99622 * 17.13668 * 10 8 7 12 12 Si 1.86796 * 120.00292 * 197.13925 * 10 8 7 13 13 H 1.48497 * 109.47347 * 89.99665 * 12 10 8 14 14 H 1.48501 * 109.47295 * 209.99781 * 12 10 8 15 15 H 1.48509 * 109.47274 * 329.99656 * 12 10 8 16 16 C 1.32428 * 122.59692 * 71.33905 * 7 6 5 17 17 O 1.21292 * 120.31691 * 184.47963 * 16 7 6 18 18 C 1.50695 * 119.38901 * 4.43362 * 16 7 6 19 19 C 1.31332 * 114.08650 * 125.37628 * 4 2 1 20 20 O 1.21282 * 116.48639 * 357.22634 * 19 4 2 21 21 H 1.09004 * 109.46914 * 300.00032 * 1 2 3 22 22 H 1.08996 * 109.46871 * 60.00413 * 1 2 3 23 23 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47347 * 239.99573 * 2 1 3 25 25 H 1.09003 * 109.46636 * 175.88379 * 3 2 1 26 26 H 1.09000 * 109.46970 * 295.87619 * 3 2 1 27 27 H 1.08997 * 109.47085 * 55.88252 * 3 2 1 28 28 H 1.08994 * 108.79788 * 72.01488 * 5 4 2 29 29 H 1.09002 * 108.70137 * 313.72843 * 5 4 2 30 30 H 1.08998 * 109.10695 * 55.03187 * 6 5 4 31 31 H 1.08998 * 109.10654 * 174.14009 * 6 5 4 32 32 H 0.96999 * 119.99646 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.17637 * 175.40585 * 18 16 7 34 34 H 1.09002 * 109.17571 * 56.18368 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.4937 -0.1639 2.4378 6 6 2.2384 -0.6753 3.6587 7 7 2.0580 -2.1101 3.8250 8 6 1.2778 -2.5610 4.8582 9 1 1.4723 -3.5271 5.3001 10 6 0.2366 -1.7751 5.3369 11 7 -0.2204 -0.7781 4.6129 12 14 -0.5133 -2.1357 7.0092 13 1 0.2141 -1.3703 8.0534 14 1 -1.9431 -1.7346 7.0075 15 1 -0.4072 -3.5888 7.2965 16 6 2.6198 -2.9980 3.0188 17 8 2.3771 -4.1796 3.1453 18 6 3.5627 -2.5266 1.9420 19 6 2.8515 -1.6741 0.9447 20 8 3.0658 -1.9159 -0.2243 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1276 1.4434 0.0738 26 1 1.7383 1.9346 -0.9246 27 1 1.6177 1.9772 0.8508 28 1 0.4443 -0.4454 2.5231 29 1 1.5641 0.9236 2.4136 30 1 3.3008 -0.4601 3.5447 31 1 1.8640 -0.1634 4.5453 32 1 -0.9470 -0.2292 4.9472 33 1 3.9881 -3.3923 1.4344 34 1 4.3669 -1.9491 2.3979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = -68.585826 kcal Electronic energy + Delta-G solvation = -18563.658503 eV Core-core repulsion = 15689.630046 eV Total energy + Delta-G solvation = -2874.028457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.19239 -40.20447 -37.96634 -36.66173 -34.31376 -32.90435 -31.35668 -30.17782 -28.09397 -26.69620 -25.08157 -22.81725 -21.28450 -19.93091 -19.05330 -18.32418 -17.81193 -17.08228 -16.80559 -16.00201 -15.73091 -15.54701 -15.18427 -14.77261 -14.53274 -14.01237 -13.92486 -13.50509 -13.37224 -13.21896 -13.04492 -12.80337 -12.70380 -12.45656 -12.27905 -12.13968 -11.92786 -11.78896 -11.00827 -10.89525 -10.36952 -9.77808 -9.59989 -8.38132 -6.07261 1.33359 1.45231 1.49322 1.56962 1.91406 2.13841 2.29730 2.98305 3.01649 3.61937 3.79775 4.01193 4.12103 4.17321 4.18923 4.37498 4.45314 4.57309 4.64080 4.77218 4.80017 4.96231 5.03796 5.07420 5.30221 5.37006 5.39534 5.50820 5.59073 6.12048 6.41499 6.60465 7.05409 7.10603 7.36528 7.90722 8.63684 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.009824 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.303519 B = 2849.576048 C = 3527.754364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.092 3.908 3 C -0.146 4.146 4 N -0.578 5.578 5 C 0.109 3.891 6 C 0.117 3.883 7 N -0.435 5.435 8 C -0.358 4.358 9 H 0.067 0.933 10 C 0.016 3.984 11 N -0.874 5.874 12 Si 0.986 3.014 13 H -0.261 1.261 14 H -0.275 1.275 15 H -0.285 1.285 16 C 0.442 3.558 17 O -0.635 6.635 18 C -0.139 4.139 19 C 0.523 3.477 20 O -0.600 6.600 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.028 0.972 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.280 0.720 33 H 0.115 0.885 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 10.860 -3.119 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 C -0.204 4.204 4 N -0.307 5.307 5 C -0.013 4.013 6 C -0.006 4.006 7 N -0.151 5.151 8 C -0.486 4.486 9 H 0.085 0.915 10 C -0.188 4.188 11 N -0.511 5.511 12 Si 0.810 3.190 13 H -0.185 1.185 14 H -0.200 1.200 15 H -0.211 1.211 16 C 0.230 3.770 17 O -0.524 6.524 18 C -0.182 4.182 19 C 0.311 3.689 20 O -0.485 6.485 21 H 0.084 0.916 22 H 0.110 0.890 23 H 0.047 0.953 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.828 10.370 -3.530 11.106 hybrid contribution -0.468 -0.653 0.854 1.172 sum 1.360 9.717 -2.676 10.170 Atomic orbital electron populations 1.22049 0.94116 1.01086 1.03625 1.21569 0.95073 0.94780 0.89699 1.22032 1.01097 0.93501 1.03784 1.46881 1.42514 1.31400 1.09877 1.21615 1.00186 0.99019 0.80511 1.21267 0.98515 0.81088 0.99740 1.43145 1.41508 1.05801 1.24628 1.19619 1.12878 1.05489 1.10570 0.91525 1.25918 0.94828 0.96070 1.02028 1.69901 1.25719 1.19310 1.36212 0.85049 0.77563 0.78165 0.78207 1.18535 1.19982 1.21067 1.19790 0.86656 0.86483 0.84094 1.90521 1.68066 1.19153 1.74623 1.21583 0.99202 1.01816 0.95570 1.18923 0.79935 0.80431 0.89578 1.90608 1.66166 1.70715 1.20969 0.91625 0.89047 0.95318 0.88839 0.92788 0.89472 0.91135 0.89562 0.87773 0.91280 0.87515 0.91031 0.86659 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 8.84 71.99 0.64 -3.61 16 2 C 0.09 2.76 2.92 45.00 0.13 2.89 16 3 C -0.15 -3.20 9.05 71.98 0.65 -2.55 16 4 N -0.58 -20.65 2.75 -811.30 -2.23 -22.88 16 5 C 0.11 3.80 4.71 86.34 0.41 4.21 16 6 C 0.12 4.51 4.77 86.18 0.41 4.93 16 7 N -0.43 -21.17 2.64 -643.03 -1.70 -22.87 16 8 C -0.36 -19.20 8.96 84.04 0.75 -18.45 16 9 H 0.07 3.93 7.51 -2.91 -0.02 3.91 16 10 C 0.02 0.75 4.80 84.93 0.41 1.16 16 11 N -0.87 -40.09 9.35 21.66 0.20 -39.89 16 12 Si 0.99 39.23 29.59 68.60 2.03 41.26 16 13 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 15 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 16 C 0.44 22.33 7.05 88.02 0.62 22.95 16 17 O -0.64 -38.21 16.73 -3.07 -0.05 -38.27 16 18 C -0.14 -5.56 5.33 28.64 0.15 -5.40 16 19 C 0.52 21.16 7.10 87.73 0.62 21.78 16 20 O -0.60 -26.57 15.18 -3.04 -0.05 -26.61 16 21 H 0.06 1.82 6.85 -2.39 -0.02 1.81 16 22 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 3.21 6.10 -2.39 -0.01 3.19 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.39 6.67 -2.39 -0.02 1.38 16 28 H 0.09 3.59 5.43 -2.39 -0.01 3.57 16 29 H 0.10 2.90 6.23 -2.39 -0.01 2.89 16 30 H 0.07 2.23 7.28 -2.39 -0.02 2.22 16 31 H 0.11 4.26 6.17 -2.39 -0.01 4.25 16 32 H 0.28 11.90 8.31 -92.71 -0.77 11.13 16 33 H 0.12 4.60 8.03 -2.39 -0.02 4.58 16 34 H 0.14 4.40 7.54 -2.39 -0.02 4.38 16 Total: -1.00 -66.74 269.78 4.10 -62.64 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.11 Total: 18.71 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 4.79 Total: 27.91 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -3.73 Total: -85.64 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: -0.10 Total: -64.88 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -66.74 4.10 -62.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.945 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds