Wall clock time and date at job start Mon Mar 30 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 C 1.53003 * 109.46872 * 120.00034 * 2 1 3 5 5 H 1.08996 * 110.53432 * 51.28359 * 4 2 1 6 6 C 1.51582 * 110.59722 * 288.28330 * 4 2 1 7 7 O 1.21236 * 127.15566 * 61.43436 * 6 4 2 8 8 N 1.34762 * 105.68875 * 241.47472 * 6 4 2 9 9 C 1.46501 * 124.18153 * 179.97438 * 8 6 4 10 10 C 1.33798 * 111.64398 * 359.97438 * 8 6 4 11 11 O 1.21535 * 123.77200 * 179.97438 * 10 8 6 12 12 N 1.34525 * 112.45594 * 0.02562 * 10 8 6 13 13 C 1.46500 * 126.69166 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.46788 * 275.29593 * 13 12 10 15 15 H 1.08004 * 120.00258 * 355.12437 * 14 13 12 16 16 C 1.37875 * 119.99925 * 175.12219 * 14 13 12 17 17 N 1.31517 * 120.00280 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00182 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47214 * 89.99522 * 18 16 14 20 20 H 1.48496 * 109.47564 * 210.00198 * 18 16 14 21 21 H 1.48501 * 109.47139 * 329.99997 * 18 16 14 22 22 H 1.08990 * 109.47312 * 300.00077 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00010 * 1 2 3 24 24 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47553 * 239.99702 * 2 1 3 26 26 H 1.09001 * 109.46914 * 184.75634 * 3 2 1 27 27 H 1.09001 * 109.46766 * 304.75429 * 3 2 1 28 28 H 1.09000 * 109.46822 * 64.75924 * 3 2 1 29 29 H 1.08995 * 109.47561 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46742 * 300.01836 * 9 8 6 31 31 H 1.09002 * 109.46826 * 60.01051 * 9 8 6 32 32 H 1.09004 * 109.46956 * 35.29106 * 13 12 10 33 33 H 1.08998 * 109.47673 * 155.29474 * 13 12 10 34 34 H 0.97002 * 120.00087 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5654 -1.6976 1.3475 6 6 1.7980 0.1199 2.4868 7 8 0.7292 0.4905 2.9229 8 7 3.0181 0.3710 3.0011 9 6 3.2541 1.1600 4.2127 10 6 3.9873 -0.1893 2.2684 11 8 5.1703 -0.1015 2.5324 12 7 3.5059 -0.8599 1.2061 13 6 4.2872 -1.5869 0.2025 14 6 4.7546 -0.6277 -0.8617 15 1 4.4309 0.4025 -0.8401 16 6 5.5956 -1.0652 -1.8628 17 7 6.0032 -0.2282 -2.7919 18 14 6.1562 -2.8467 -1.8998 19 1 5.1953 -3.6516 -2.6960 20 1 7.5034 -2.9291 -2.5190 21 1 6.2156 -3.3758 -0.5135 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1267 1.4436 -0.0852 27 1 1.6088 1.9803 -0.8444 28 1 1.7480 1.9311 0.9296 29 1 4.3249 1.2116 4.4098 30 1 2.8616 2.1671 4.0726 31 1 2.7514 0.6883 5.0570 32 1 5.1512 -2.0493 0.6797 33 1 3.6664 -2.3592 -0.2518 34 1 6.5952 -0.5360 -3.4960 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:34 Heat of formation + Delta-G solvation = -64.214121 kcal Electronic energy + Delta-G solvation = -18361.438874 eV Core-core repulsion = 15487.599988 eV Total energy + Delta-G solvation = -2873.838886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.45693 -39.69487 -37.94791 -36.59578 -35.36419 -34.35038 -31.24569 -28.27608 -28.10850 -27.56924 -24.75267 -23.47483 -21.52971 -20.78087 -19.15438 -18.32886 -18.13084 -17.44107 -16.67920 -16.48510 -15.72929 -15.65863 -15.28237 -15.00919 -14.78564 -14.33363 -13.95314 -13.87795 -13.47615 -13.36994 -13.20595 -12.98653 -12.63754 -12.41142 -12.17584 -12.03060 -11.92337 -11.70224 -11.44589 -10.95954 -10.81500 -10.75876 -9.68980 -8.26395 -6.32203 0.62060 1.22434 1.38898 1.44254 1.51716 2.05033 2.13572 2.36407 3.02161 3.10499 3.60330 3.82146 4.04263 4.17419 4.41383 4.43662 4.48714 4.55057 4.58791 4.71497 4.79186 4.81041 4.94049 5.01826 5.21283 5.22724 5.28767 5.42755 5.47284 5.59946 6.23099 6.28780 6.42202 6.74526 7.13643 7.32733 8.89240 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.009300 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.729548 B = 3010.067806 C = 3530.638807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.144 4.144 4 C 0.092 3.908 5 H 0.153 0.847 6 C 0.538 3.462 7 O -0.484 6.484 8 N -0.582 5.582 9 C 0.082 3.918 10 C 0.688 3.312 11 O -0.588 6.588 12 N -0.599 5.599 13 C 0.253 3.747 14 C -0.537 4.537 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.943 5.943 18 Si 0.938 3.062 19 H -0.252 1.252 20 H -0.290 1.290 21 H -0.248 1.248 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 -2.644 8.859 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.202 4.202 4 C -0.015 4.015 5 H 0.170 0.830 6 C 0.326 3.674 7 O -0.356 6.356 8 N -0.328 5.328 9 C -0.058 4.058 10 C 0.390 3.610 11 O -0.466 6.466 12 N -0.334 5.334 13 C 0.134 3.866 14 C -0.575 4.575 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.583 5.583 18 Si 0.761 3.239 19 H -0.177 1.177 20 H -0.216 1.216 21 H -0.172 1.172 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.959 -2.422 9.054 14.420 hybrid contribution 0.985 -0.152 -0.401 1.074 sum -9.973 -2.574 8.653 13.452 Atomic orbital electron populations 1.21832 0.91506 1.03567 1.02892 1.21206 0.97694 0.95616 0.95721 1.21851 1.00545 0.96451 1.01313 1.22519 0.82103 1.02094 0.94761 0.82994 1.20821 0.82968 0.79015 0.84558 1.90724 1.26335 1.53060 1.65466 1.46380 1.08271 1.50187 1.28011 1.22014 1.04497 0.95610 0.83693 1.16138 0.84570 0.79150 0.81120 1.90882 1.15543 1.65673 1.74476 1.47915 1.06654 1.53249 1.25581 1.19421 0.91093 0.91344 0.84767 1.21644 1.29301 0.97659 1.08943 0.93361 1.25734 0.95395 1.02307 0.94769 1.70041 1.35477 1.37454 1.15281 0.85857 0.78273 0.79886 0.79840 1.17663 1.21568 1.17220 0.92004 0.91204 0.90393 0.89249 0.94820 0.91236 0.93707 0.89256 0.89558 0.88440 0.94908 0.91260 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.07 71.98 0.65 -2.56 16 2 C -0.08 -2.50 2.80 -10.79 -0.03 -2.53 16 3 C -0.14 -4.96 8.75 71.98 0.63 -4.33 16 4 C 0.09 2.79 3.19 44.37 0.14 2.93 16 5 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 6 C 0.54 16.46 5.71 87.94 0.50 16.96 16 7 O -0.48 -14.99 16.29 -2.89 -0.05 -15.04 16 8 N -0.58 -19.06 3.00 -796.65 -2.39 -21.46 16 9 C 0.08 2.03 10.88 127.77 1.39 3.42 16 10 C 0.69 28.23 8.31 179.44 1.49 29.72 16 11 O -0.59 -28.76 16.97 -3.83 -0.06 -28.82 16 12 N -0.60 -23.45 2.38 -822.11 -1.95 -25.40 16 13 C 0.25 11.13 4.65 85.63 0.40 11.53 16 14 C -0.54 -28.88 9.76 25.60 0.25 -28.63 16 15 H 0.05 2.91 5.92 -2.91 -0.02 2.89 16 16 C 0.02 0.90 5.47 84.65 0.46 1.37 16 17 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 18 Si 0.94 41.10 27.57 68.60 1.89 43.00 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.21 6.40 99.48 0.64 -9.58 16 22 H 0.06 1.49 6.49 -2.39 -0.02 1.48 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 3.03 7.82 -2.39 -0.02 3.01 16 26 H 0.03 1.44 5.82 -2.39 -0.01 1.43 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.45 6.78 -2.39 -0.02 1.44 16 29 H 0.09 2.32 7.45 -2.39 -0.02 2.30 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.03 1.53 6.83 -2.39 -0.02 1.51 16 33 H 0.07 2.62 7.81 -2.39 -0.02 2.61 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -68.94 281.45 4.65 -64.29 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.03 Total: 12.06 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 5.89 Total: 27.87 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.05 Total: -103.35 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.11 Total: -43.86 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.89 Total: 43.00 kcal Total: -68.94 4.65 -64.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.072 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds