Wall clock time and date at job start Mon Mar 30 2020 04:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.08417 * 2 1 4 4 C 1.49115 * 109.09373 * 240.92072 * 2 1 3 5 5 O 1.21289 * 116.35321 * 106.25824 * 4 2 1 6 6 N 1.31176 * 127.37719 * 286.33500 * 4 2 1 7 7 C 1.46496 * 114.10551 * 178.05597 * 6 4 2 8 8 C 1.50708 * 109.47041 * 269.95579 * 7 6 4 9 9 H 1.08001 * 119.99692 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99950 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00225 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99639 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47077 * 90.00219 * 12 10 8 14 14 H 1.48503 * 109.47161 * 209.99878 * 12 10 8 15 15 H 1.48492 * 109.47400 * 329.99962 * 12 10 8 16 16 C 1.44841 * 131.83275 * 358.00210 * 6 4 2 17 17 C 1.52029 * 112.59619 * 12.96268 * 16 6 4 18 18 C 1.49929 * 110.91998 * 295.64757 * 17 16 6 19 19 O 1.21282 * 118.82632 * 250.24407 * 18 17 16 20 20 N 1.32406 * 122.35322 * 70.25483 * 18 17 16 21 21 C 1.46505 * 120.18728 * 185.83630 * 20 18 17 22 22 H 1.08998 * 109.47146 * 267.66827 * 1 2 3 23 23 H 1.09001 * 109.47013 * 147.66988 * 1 2 3 24 24 H 1.09000 * 109.47228 * 27.66792 * 1 2 3 25 25 H 1.08999 * 109.47205 * 29.95717 * 7 6 4 26 26 H 1.08997 * 109.47539 * 149.96301 * 7 6 4 27 27 H 0.97004 * 119.99815 * 179.97438 * 11 10 8 28 28 H 1.08998 * 108.85907 * 252.15372 * 16 6 4 29 29 H 1.08999 * 108.85499 * 133.76056 * 16 6 4 30 30 H 1.08997 * 109.19057 * 175.28077 * 17 16 6 31 31 H 1.09004 * 109.15108 * 55.99074 * 17 16 6 32 32 H 1.09000 * 109.46598 * 270.02453 * 21 20 18 33 33 H 1.09004 * 109.47141 * 30.02203 * 21 20 18 34 34 H 1.08994 * 109.47397 * 150.02630 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8864 1.0301 0.0000 4 6 2.0178 -0.6849 -1.2315 5 8 2.4814 0.0281 -2.0963 6 7 2.0012 -1.9714 -1.4868 7 6 2.5155 -2.3251 -2.8121 8 6 1.3836 -2.3233 -3.8071 9 1 0.3815 -2.0823 -3.4845 10 6 1.6276 -2.6282 -5.1294 11 7 2.8480 -2.9211 -5.5223 12 14 0.2247 -2.6252 -6.3628 13 1 0.0915 -1.2712 -6.9577 14 1 0.5072 -3.6118 -7.4362 15 1 -1.0397 -2.9904 -5.6751 16 6 1.5687 -3.1072 -0.6988 17 6 0.7620 -2.6973 0.5229 18 6 1.6022 -1.9034 1.4777 19 8 1.9207 -2.4067 2.5341 20 7 2.0089 -0.6724 1.2088 21 6 2.9325 0.0130 2.1163 22 1 -0.3633 -0.0418 1.0268 23 1 -0.3633 -0.8684 -0.5496 24 1 -0.3634 0.9101 -0.4772 25 1 3.2677 -1.5971 -3.1161 26 1 2.9646 -3.3175 -2.7747 27 1 3.0196 -3.1360 -6.4526 28 1 2.4469 -3.6633 -0.3708 29 1 0.9560 -3.7568 -1.3238 30 1 0.3954 -3.5916 1.0267 31 1 -0.0869 -2.0922 0.2043 32 1 2.3638 0.5610 2.8676 33 1 3.5708 -0.7212 2.6079 34 1 3.5499 0.7092 1.5488 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261079315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:42 Heat of formation + Delta-G solvation = -65.737902 kcal Electronic energy + Delta-G solvation = -18244.408336 eV Core-core repulsion = 15370.503374 eV Total energy + Delta-G solvation = -2873.904962 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.42877 -40.41574 -37.30943 -36.95150 -34.88954 -33.04194 -31.82849 -29.21028 -28.04524 -25.99291 -25.56676 -24.23026 -21.08168 -20.12269 -18.81748 -18.19524 -17.81440 -17.10678 -16.87334 -16.46944 -15.98457 -15.86533 -15.31059 -14.86284 -14.34937 -14.05848 -13.85511 -13.82014 -13.42596 -13.30727 -13.16186 -12.95248 -12.79275 -12.63019 -12.51999 -12.16346 -11.84410 -11.62236 -11.10307 -10.86463 -10.58256 -9.81311 -9.60097 -8.20113 -6.33125 1.35412 1.40569 1.43177 1.51894 1.55456 2.10966 2.22966 2.43622 3.11779 3.24438 3.53857 3.80317 3.84344 4.03756 4.13924 4.30786 4.57636 4.60608 4.62253 4.65949 4.72513 4.82890 4.85861 4.98981 5.15165 5.27154 5.33157 5.37415 5.74983 6.06445 6.18979 6.73165 6.81065 6.99046 7.28784 7.40619 8.88921 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.007195 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.508966 B = 3890.496596 C = 4002.022132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 H 0.139 0.861 4 C 0.490 3.510 5 O -0.599 6.599 6 N -0.579 5.579 7 C 0.236 3.764 8 C -0.533 4.533 9 H 0.061 0.939 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.968 3.032 13 H -0.281 1.281 14 H -0.280 1.280 15 H -0.257 1.257 16 C 0.127 3.873 17 C -0.163 4.163 18 C 0.515 3.485 19 O -0.582 6.582 20 N -0.599 5.599 21 C 0.081 3.919 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.011 0.989 26 H 0.019 0.981 27 H 0.265 0.735 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 3.755 13.394 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 H 0.157 0.843 4 C 0.277 3.723 5 O -0.481 6.481 6 N -0.308 5.308 7 C 0.115 3.885 8 C -0.571 4.571 9 H 0.079 0.921 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.792 3.208 13 H -0.207 1.207 14 H -0.205 1.205 15 H -0.181 1.181 16 C 0.004 3.996 17 C -0.202 4.202 18 C 0.304 3.696 19 O -0.464 6.464 20 N -0.331 5.331 21 C -0.061 4.061 22 H 0.115 0.885 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.137 3.811 13.451 15.268 hybrid contribution 0.005 -0.119 -1.096 1.102 sum -6.132 3.692 12.355 14.278 Atomic orbital electron populations 1.22494 0.90436 1.04719 1.04726 1.21286 0.98112 0.97745 0.79761 0.84346 1.20025 0.79926 0.82399 0.89983 1.90753 1.48046 1.61606 1.47650 1.46829 1.59853 1.05894 1.18210 1.19031 0.95139 0.94576 0.79791 1.21585 0.94769 1.46899 0.93879 0.92052 1.25865 0.98383 0.94655 1.00373 1.70070 1.21719 1.47773 1.17544 0.85406 0.79362 0.77714 0.78278 1.20716 1.20536 1.18084 1.20928 0.99379 0.87642 0.91606 1.22213 0.99735 1.03628 0.94658 1.20252 0.80452 0.81571 0.87364 1.90680 1.58677 1.70129 1.26871 1.47511 1.46821 1.15356 1.23425 1.21888 0.92939 0.97570 0.93654 0.88514 0.91170 0.88870 0.97130 0.96340 0.92575 0.91923 0.88321 0.84458 0.85656 0.89973 0.91565 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 8.06 71.98 0.58 -2.88 16 2 C 0.14 3.74 2.99 43.78 0.13 3.87 16 3 H 0.14 3.33 7.73 -2.38 -0.02 3.31 16 4 C 0.49 19.57 6.25 87.72 0.55 20.12 16 5 O -0.60 -30.25 15.35 -3.06 -0.05 -30.30 16 6 N -0.58 -23.82 2.79 -839.49 -2.34 -26.16 16 7 C 0.24 12.50 4.58 85.64 0.39 12.89 16 8 C -0.53 -29.46 9.30 25.60 0.24 -29.22 16 9 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 10 C 0.01 0.33 5.46 84.65 0.46 0.80 16 11 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 12 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 C 0.13 4.03 5.73 86.37 0.50 4.53 16 17 C -0.16 -4.00 5.35 29.29 0.16 -3.84 16 18 C 0.51 14.72 6.47 87.78 0.57 15.28 16 19 O -0.58 -19.88 16.50 -3.04 -0.05 -19.93 16 20 N -0.60 -15.60 2.72 -834.36 -2.27 -17.87 16 21 C 0.08 1.70 10.30 127.77 1.32 3.02 16 22 H 0.10 1.57 7.85 -2.39 -0.02 1.55 16 23 H 0.07 1.61 5.46 -2.39 -0.01 1.60 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.01 0.66 6.71 -2.39 -0.02 0.64 16 26 H 0.02 1.01 7.89 -2.39 -0.02 0.99 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.10 3.07 8.06 -2.39 -0.02 3.05 16 30 H 0.14 2.73 8.10 -2.39 -0.02 2.72 16 31 H 0.13 2.67 4.19 -2.39 -0.01 2.66 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.57 7.45 -2.39 -0.02 1.55 16 34 H 0.09 1.58 7.97 -2.39 -0.02 1.57 16 Total: -1.00 -74.77 277.94 3.59 -71.17 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.10 Total: 8.56 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 4.89 Total: 24.56 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.32 Total: -99.66 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.10 Total: -50.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.77 3.59 -71.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.436 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds