Wall clock time and date at job start Mon Mar 30 2020 04:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47239 * 2 1 4 4 C 1.33658 * 118.57565 * 89.99570 * 3 2 1 5 5 O 1.21283 * 118.64925 * 0.12362 * 4 3 2 6 6 C 1.49906 * 122.71116 * 180.09637 * 4 3 2 7 7 N 1.45665 * 111.29529 * 19.70054 * 6 4 3 8 8 C 1.46504 * 118.57802 * 160.50900 * 7 6 4 9 9 C 1.50703 * 109.46894 * 89.99722 * 8 7 6 10 10 H 1.07995 * 119.99833 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99520 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00187 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99521 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47374 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47121 * 120.00053 * 13 11 9 16 16 H 1.48507 * 109.46747 * 239.99695 * 13 11 9 17 17 C 1.33658 * 122.84493 * 340.52784 * 7 6 4 18 18 O 1.21283 * 118.64221 * 180.02562 * 17 7 6 19 19 C 1.45662 * 118.57469 * 270.01921 * 3 2 1 20 20 H 1.08999 * 109.11275 * 40.04447 * 19 3 2 21 21 C 1.52997 * 109.11384 * 280.92085 * 19 3 2 22 22 H 1.09000 * 109.46954 * 59.99802 * 1 2 3 23 23 H 1.09001 * 109.47449 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47250 * 300.00512 * 1 2 3 25 25 H 1.08994 * 109.47130 * 239.99974 * 2 1 3 26 26 H 1.09005 * 109.46703 * 119.99310 * 2 1 3 27 27 H 1.09005 * 109.11602 * 140.15904 * 6 4 3 28 28 H 1.08995 * 109.11776 * 259.22936 * 6 4 3 29 29 H 1.08998 * 109.46713 * 209.99685 * 8 7 6 30 30 H 1.08995 * 109.46802 * 329.99756 * 8 7 6 31 31 H 0.97004 * 120.00150 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.47456 * 59.99718 * 21 19 3 33 33 H 1.08996 * 109.46936 * 180.02562 * 21 19 3 34 34 H 1.09011 * 109.46895 * 299.99871 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2314 1.9840 1.1738 5 8 2.0146 1.3643 2.1935 6 6 2.7278 3.3944 1.2819 7 7 2.5011 4.1312 0.0459 8 6 2.5121 5.5955 0.0909 9 6 3.9132 6.0950 -0.1514 10 1 4.7150 5.3920 -0.3222 11 6 4.1711 7.4494 -0.1549 12 7 3.1945 8.3054 0.0527 13 14 5.9076 8.0686 -0.4559 14 1 6.8168 6.9125 -0.6612 15 1 5.9229 8.9316 -1.6643 16 1 6.3637 8.8539 0.7191 17 6 2.2832 3.5292 -1.1273 18 8 2.1038 4.2177 -2.1095 19 6 2.2502 2.0382 -1.2792 20 1 1.4514 1.7673 -1.9695 21 6 3.5880 1.5643 -1.8506 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.2052 3.8953 2.0969 28 1 3.7959 3.3812 1.4988 29 1 1.8482 5.9876 -0.6795 30 1 2.1708 5.9314 1.0701 31 1 3.3761 9.2583 0.0505 32 1 3.5600 0.4840 -1.9932 33 1 3.7676 2.0530 -2.8082 34 1 4.3898 1.8186 -1.1573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261080566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:47 Heat of formation + Delta-G solvation = -63.946155 kcal Electronic energy + Delta-G solvation = -17935.354666 eV Core-core repulsion = 15061.527400 eV Total energy + Delta-G solvation = -2873.827266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87083 -38.64499 -36.20985 -35.12172 -32.86695 -32.03677 -29.80353 -28.25633 -26.74643 -24.65937 -23.14164 -22.70157 -20.54038 -18.13358 -17.20094 -16.92681 -16.49005 -15.82415 -15.01815 -14.54791 -14.36322 -14.07695 -14.01997 -13.49295 -13.37364 -13.07395 -12.68051 -12.27698 -12.12988 -12.00335 -11.79718 -11.55426 -11.32617 -11.05821 -10.93400 -10.69394 -10.25463 -9.90578 -9.69683 -9.19196 -8.76192 -8.49752 -7.91416 -6.11178 -4.16258 2.57165 2.78361 3.23032 3.26895 3.34709 3.38263 3.65567 4.32471 4.40669 4.73465 4.95538 5.03564 5.16007 5.23074 5.24725 5.31280 5.50269 5.58909 5.68469 5.76253 5.78385 5.88588 6.08194 6.15176 6.37067 6.81131 7.26674 7.28986 7.36850 7.83541 8.03923 8.12670 8.20331 8.71890 8.88891 9.48813 10.97419 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036254 B = 0.006799 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.137791 B = 4117.238787 C = 4308.773100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.601 5.601 4 C 0.514 3.486 5 O -0.545 6.545 6 C 0.104 3.896 7 N -0.588 5.588 8 C 0.240 3.760 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.900 3.100 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.505 3.495 18 O -0.530 6.530 19 C 0.126 3.874 20 H 0.111 0.889 21 C -0.156 4.156 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -14.946 -0.707 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.302 3.698 5 O -0.422 6.422 6 C -0.022 4.022 7 N -0.321 5.321 8 C 0.121 3.879 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.290 3.710 18 O -0.406 6.406 19 C 0.019 3.981 20 H 0.129 0.871 21 C -0.215 4.215 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.234 -14.681 -0.660 14.865 hybrid contribution 0.995 0.455 -0.163 1.107 sum -1.239 -14.226 -0.824 14.304 Atomic orbital electron populations 1.22112 0.95732 1.02118 1.02607 1.21486 0.94621 0.82243 1.03345 1.47607 1.65530 1.14751 1.05673 1.20419 0.77012 0.89281 0.83049 1.90708 1.52061 1.65286 1.34158 1.21311 1.03404 0.87665 0.89850 1.47698 1.68342 1.10385 1.05687 1.19474 0.98434 0.71287 0.98682 1.21384 0.93807 0.91918 1.49610 0.92302 1.24927 0.97529 0.96600 0.94935 1.69935 1.31535 1.02356 1.49313 0.86416 0.84128 0.78833 0.77887 1.19787 1.20822 1.20896 1.19583 0.78575 0.88787 0.84095 1.90752 1.49842 1.63762 1.36255 1.21188 1.00487 0.90595 0.85811 0.87088 1.22106 0.95438 1.01548 1.02393 0.92492 0.91577 0.92085 0.90421 0.89387 0.87006 0.88218 0.93103 0.94541 0.92638 0.91443 0.90135 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.23 37.16 0.38 -1.33 16 2 C 0.11 1.15 5.90 -4.04 -0.02 1.12 16 3 N -0.60 -8.37 2.42 -169.15 -0.41 -8.78 16 4 C 0.51 8.34 7.58 -11.87 -0.09 8.25 16 5 O -0.54 -9.80 16.32 5.55 0.09 -9.71 16 6 C 0.10 1.79 6.52 -6.03 -0.04 1.75 16 7 N -0.59 -12.20 2.80 -178.23 -0.50 -12.70 16 8 C 0.24 6.07 5.04 -5.19 -0.03 6.04 16 9 C -0.53 -14.50 9.38 -34.44 -0.32 -14.82 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 13 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.50 10.08 6.80 -11.87 -0.08 10.00 16 18 O -0.53 -12.72 16.32 5.55 0.09 -12.63 16 19 C 0.13 1.83 3.07 -69.92 -0.21 1.61 16 20 H 0.11 1.42 8.11 -51.93 -0.42 0.99 16 21 C -0.16 -1.94 9.33 37.16 0.35 -1.60 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.65 7.41 -51.93 -0.38 0.26 16 26 H 0.09 1.02 7.24 -51.93 -0.38 0.65 16 27 H 0.11 1.85 7.94 -51.93 -0.41 1.43 16 28 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.05 1.45 7.24 -51.93 -0.38 1.07 16 30 H 0.04 0.93 7.89 -51.93 -0.41 0.52 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.07 0.64 7.54 -51.93 -0.39 0.25 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -32.34 289.63 -5.67 -38.00 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.85 Total: -2.35 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.17 Total: 12.67 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.17 Total: -46.72 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.18 Total: -22.34 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.34 -5.67 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.942 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds