Wall clock time and date at job start Mon Mar 30 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47239 * 2 1 4 4 C 1.33658 * 118.57565 * 89.99570 * 3 2 1 5 5 O 1.21283 * 118.64925 * 0.12362 * 4 3 2 6 6 C 1.49906 * 122.71116 * 180.09637 * 4 3 2 7 7 N 1.45665 * 111.29529 * 19.70054 * 6 4 3 8 8 C 1.46504 * 118.57802 * 160.50900 * 7 6 4 9 9 C 1.50703 * 109.46894 * 89.99722 * 8 7 6 10 10 H 1.07995 * 119.99833 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99520 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00187 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99521 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47374 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47121 * 120.00053 * 13 11 9 16 16 H 1.48507 * 109.46747 * 239.99695 * 13 11 9 17 17 C 1.33658 * 122.84493 * 340.52784 * 7 6 4 18 18 O 1.21283 * 118.64221 * 180.02562 * 17 7 6 19 19 C 1.45662 * 118.57469 * 270.01921 * 3 2 1 20 20 H 1.08999 * 109.11275 * 40.04447 * 19 3 2 21 21 C 1.52997 * 109.11384 * 280.92085 * 19 3 2 22 22 H 1.09000 * 109.46954 * 59.99802 * 1 2 3 23 23 H 1.09001 * 109.47449 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47250 * 300.00512 * 1 2 3 25 25 H 1.08994 * 109.47130 * 239.99974 * 2 1 3 26 26 H 1.09005 * 109.46703 * 119.99310 * 2 1 3 27 27 H 1.09005 * 109.11602 * 140.15904 * 6 4 3 28 28 H 1.08995 * 109.11776 * 259.22936 * 6 4 3 29 29 H 1.08998 * 109.46713 * 209.99685 * 8 7 6 30 30 H 1.08995 * 109.46802 * 329.99756 * 8 7 6 31 31 H 0.97004 * 120.00150 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.47456 * 59.99718 * 21 19 3 33 33 H 1.08996 * 109.46936 * 180.02562 * 21 19 3 34 34 H 1.09011 * 109.46895 * 299.99871 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2314 1.9840 1.1738 5 8 2.0146 1.3643 2.1935 6 6 2.7278 3.3944 1.2819 7 7 2.5011 4.1312 0.0459 8 6 2.5121 5.5955 0.0909 9 6 3.9132 6.0950 -0.1514 10 1 4.7150 5.3920 -0.3222 11 6 4.1711 7.4494 -0.1549 12 7 3.1945 8.3054 0.0527 13 14 5.9076 8.0686 -0.4559 14 1 6.8168 6.9125 -0.6612 15 1 5.9229 8.9316 -1.6643 16 1 6.3637 8.8539 0.7191 17 6 2.2832 3.5292 -1.1273 18 8 2.1038 4.2177 -2.1095 19 6 2.2502 2.0382 -1.2792 20 1 1.4514 1.7673 -1.9695 21 6 3.5880 1.5643 -1.8506 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.2052 3.8953 2.0969 28 1 3.7959 3.3812 1.4988 29 1 1.8482 5.9876 -0.6795 30 1 2.1708 5.9314 1.0701 31 1 3.3761 9.2583 0.0505 32 1 3.5600 0.4840 -1.9932 33 1 3.7676 2.0530 -2.8082 34 1 4.3898 1.8186 -1.1573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261080566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:46 Heat of formation + Delta-G solvation = -86.036920 kcal Electronic energy + Delta-G solvation = -17936.312594 eV Core-core repulsion = 15061.527400 eV Total energy + Delta-G solvation = -2874.785193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.24505 -40.16289 -37.47585 -36.82415 -34.82588 -33.19781 -31.05206 -29.87690 -28.37879 -26.13369 -24.41062 -24.19509 -21.96048 -19.54887 -18.93175 -18.34600 -18.08956 -17.27685 -16.75747 -16.01767 -15.81194 -15.56808 -15.28988 -14.78327 -14.70558 -14.47489 -14.05562 -13.63462 -13.47307 -13.36988 -13.13235 -12.84882 -12.78145 -12.66959 -12.59073 -12.25512 -11.90308 -11.71826 -11.30071 -10.74384 -10.64159 -9.96100 -9.68675 -8.24439 -6.38362 1.25982 1.38321 1.40061 1.45352 1.52985 1.84137 2.07747 2.39929 2.97736 3.08829 3.44269 3.93881 3.96935 4.15068 4.24058 4.34794 4.44347 4.51591 4.62591 4.72725 4.82187 4.91591 5.00744 5.15188 5.18986 5.27724 5.34978 5.38421 5.70248 6.00242 6.04621 6.51752 6.69206 6.80224 7.14238 7.33101 8.84090 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036254 B = 0.006799 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.137791 B = 4117.238787 C = 4308.773100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.518 3.482 5 O -0.563 6.563 6 C 0.101 3.899 7 N -0.593 5.593 8 C 0.254 3.746 9 C -0.542 4.542 10 H 0.057 0.943 11 C 0.010 3.990 12 N -0.928 5.928 13 Si 0.969 3.031 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.272 1.272 17 C 0.496 3.504 18 O -0.578 6.578 19 C 0.139 3.861 20 H 0.138 0.862 21 C -0.151 4.151 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.033 0.967 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.011 0.989 30 H 0.028 0.972 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -17.133 -1.244 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.306 3.694 5 O -0.442 6.442 6 C -0.024 4.024 7 N -0.325 5.325 8 C 0.133 3.867 9 C -0.580 4.580 10 H 0.075 0.925 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.793 3.207 14 H -0.189 1.189 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.283 3.717 18 O -0.458 6.458 19 C 0.033 3.967 20 H 0.156 0.844 21 C -0.209 4.209 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.134 0.866 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.244 -16.923 -1.190 17.010 hybrid contribution 0.619 1.115 0.000 1.275 sum -0.625 -15.808 -1.190 15.865 Atomic orbital electron populations 1.22099 0.95238 1.03517 1.01402 1.21793 0.94979 0.80115 1.05011 1.47642 1.64617 1.15906 1.04584 1.20056 0.77135 0.88535 0.83657 1.90707 1.53190 1.65439 1.34885 1.21435 1.04174 0.88509 0.88288 1.47642 1.68453 1.08919 1.07501 1.18961 0.96810 0.74321 0.96600 1.21643 0.94462 0.92324 1.49580 0.92481 1.25836 1.01793 0.96823 0.94511 1.70050 1.33774 1.02783 1.50103 0.85345 0.79031 0.78347 0.77951 1.18942 1.20696 1.19696 1.20626 0.76907 0.91302 0.82857 1.90723 1.51771 1.65612 1.37685 1.21143 1.02963 0.86172 0.86435 0.84421 1.22115 0.93272 1.04061 1.01437 0.92216 0.88924 0.94732 0.86605 0.89839 0.86828 0.87398 0.97129 0.95396 0.92328 0.87251 0.90693 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.23 71.98 0.74 -2.15 16 2 C 0.10 1.84 5.90 86.38 0.51 2.35 16 3 N -0.59 -15.08 2.42 -808.09 -1.95 -17.03 16 4 C 0.52 16.21 7.58 87.58 0.66 16.88 16 5 O -0.56 -19.62 16.32 -3.04 -0.05 -19.67 16 6 C 0.10 3.50 6.52 85.54 0.56 4.06 16 7 N -0.59 -25.10 2.80 -836.80 -2.34 -27.44 16 8 C 0.25 13.39 5.04 85.63 0.43 13.82 16 9 C -0.54 -30.34 9.38 25.60 0.24 -30.10 16 10 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 11 C 0.01 0.54 5.46 84.66 0.46 1.01 16 12 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 13 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 C 0.50 19.84 6.80 87.58 0.60 20.43 16 18 O -0.58 -28.46 16.32 -3.04 -0.05 -28.50 16 19 C 0.14 3.71 3.07 44.15 0.14 3.84 16 20 H 0.14 3.04 8.11 -2.39 -0.02 3.02 16 21 C -0.15 -3.27 9.33 71.98 0.67 -2.59 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.12 1.27 7.41 -2.39 -0.02 1.26 16 26 H 0.08 1.67 7.24 -2.38 -0.02 1.65 16 27 H 0.11 3.83 7.94 -2.38 -0.02 3.81 16 28 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.01 0.64 7.24 -2.39 -0.02 0.62 16 30 H 0.03 1.50 7.89 -2.39 -0.02 1.48 16 31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.11 1.50 7.54 -2.38 -0.02 1.48 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -71.90 289.63 4.00 -67.90 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.08 Total: 6.09 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 5.00 Total: 27.54 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -4.01 Total: -99.33 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.10 Total: -48.17 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.90 4.00 -67.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.140 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds