Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.08999 * 109.30706 * 304.60410 * 4 2 1 6 6 C 1.52626 * 109.30782 * 185.00129 * 4 2 1 7 7 N 1.46303 * 110.44888 * 292.20551 * 6 4 2 8 8 C 1.46502 * 120.02224 * 143.73088 * 7 6 4 9 9 C 1.50701 * 109.47270 * 89.99429 * 8 7 6 10 10 H 1.07993 * 119.99837 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99709 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99596 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 120.00259 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47001 * 89.99693 * 13 11 9 15 15 H 1.48497 * 109.47484 * 209.99810 * 13 11 9 16 16 H 1.48506 * 109.47297 * 330.00184 * 13 11 9 17 17 C 1.34984 * 119.95780 * 323.70138 * 7 6 4 18 18 O 1.21354 * 120.62500 * 181.17358 * 17 7 6 19 19 C 1.49818 * 118.74229 * 1.15793 * 17 7 6 20 20 O 1.21352 * 120.62833 * 198.60731 * 19 17 7 21 21 N 1.34987 * 118.74124 * 18.58922 * 19 17 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.30681 * 52.50467 * 6 4 2 30 30 H 1.09001 * 109.31018 * 171.90295 * 6 4 2 31 31 H 1.08997 * 109.46803 * 209.99828 * 8 7 6 32 32 H 1.09006 * 109.47019 * 329.99859 * 8 7 6 33 33 H 0.97003 * 119.99843 * 180.02562 * 12 11 9 34 34 H 0.97001 * 120.02133 * 181.17461 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6094 -1.7218 -1.2887 6 6 3.5611 -0.8288 -1.1842 7 7 4.1728 0.4946 -1.3068 8 6 5.3814 0.8170 -0.5442 9 6 6.5988 0.4569 -1.3564 10 1 6.4836 0.0310 -2.3420 11 6 7.8595 0.6723 -0.8413 12 7 8.9218 0.3585 -1.5502 13 14 8.0586 1.4096 0.8634 14 1 8.1033 0.3204 1.8717 15 1 9.3209 2.1896 0.9210 16 1 6.9098 2.3050 1.1527 17 6 3.6231 1.4182 -2.1234 18 8 4.1322 2.5124 -2.2504 19 6 2.3727 1.0668 -2.8701 20 8 2.0336 1.7066 -3.8438 21 7 1.6307 0.0246 -2.4394 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 3.8507 -1.2728 -0.2318 30 1 3.9126 -1.4648 -1.9966 31 1 5.3962 1.8837 -0.3207 32 1 5.3854 0.2504 0.3870 33 1 9.8088 0.5096 -1.1877 34 1 0.8268 -0.2298 -2.9189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261080775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = -53.780244 kcal Electronic energy + Delta-G solvation = -18347.435457 eV Core-core repulsion = 15474.049018 eV Total energy + Delta-G solvation = -2873.386439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15287 -37.86718 -37.61198 -34.61786 -33.09121 -32.45190 -29.39116 -28.42962 -27.01544 -24.50702 -23.63212 -21.72991 -20.58767 -18.09609 -17.70228 -17.18027 -16.88835 -16.06241 -15.23058 -15.08284 -14.29063 -14.18589 -14.04936 -13.41405 -13.25560 -13.07793 -12.53504 -12.36492 -12.19082 -11.97772 -11.67118 -11.33323 -11.05208 -10.95018 -10.92526 -10.79591 -10.56198 -10.14731 -9.61031 -9.21591 -9.01793 -8.66947 -7.88191 -6.15660 -4.16371 1.92621 3.02531 3.21000 3.28484 3.32759 3.38193 3.76939 4.32473 4.47378 4.49861 4.68114 4.84056 5.16101 5.19866 5.28882 5.40603 5.54640 5.59810 5.80781 5.87256 5.88324 6.03993 6.17070 6.32763 6.43214 6.64876 6.78558 6.95277 7.09571 7.48777 7.79766 7.99774 8.35943 8.62448 8.87704 9.42517 10.97490 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030295 B = 0.008316 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.032901 B = 3366.321577 C = 3714.451181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.180 4.180 4 C 0.126 3.874 5 H 0.109 0.891 6 C 0.102 3.898 7 N -0.581 5.581 8 C 0.214 3.786 9 C -0.536 4.536 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.893 5.893 13 Si 0.874 3.126 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.511 3.489 18 O -0.490 6.490 19 C 0.517 3.483 20 O -0.506 6.506 21 N -0.713 5.713 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.062 -5.929 6.067 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.237 4.237 4 C 0.020 3.980 5 H 0.127 0.873 6 C -0.022 4.022 7 N -0.317 5.317 8 C 0.094 3.906 9 C -0.574 4.574 10 H 0.094 0.906 11 C -0.129 4.129 12 N -0.531 5.531 13 Si 0.701 3.299 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.188 1.188 17 C 0.292 3.708 18 O -0.362 6.362 19 C 0.298 3.702 20 O -0.378 6.378 21 N -0.371 5.371 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.541 -4.884 5.559 17.213 hybrid contribution -0.068 0.072 0.669 0.676 sum -15.610 -4.812 6.228 17.482 Atomic orbital electron populations 1.21829 0.94934 1.01490 1.02064 1.21579 0.96103 0.97515 0.97551 1.22558 1.04423 0.95265 1.01456 1.21570 0.95448 0.96084 0.84859 0.87348 1.21753 0.89896 0.85976 1.04574 1.48158 1.28335 1.12048 1.43113 1.19821 0.81976 0.97631 0.91167 1.21288 0.88881 1.43085 1.04174 0.90583 1.24858 0.95651 0.94719 0.97627 1.69890 0.98138 1.47506 1.37532 0.86877 0.78525 0.79940 0.84605 1.19974 1.20811 1.18753 1.19897 0.84595 0.85893 0.80385 1.90778 1.61391 1.22249 1.61743 1.20910 0.85035 0.79846 0.84362 1.90767 1.70555 1.50554 1.25882 1.46160 1.28814 1.32245 1.29838 0.92669 0.92637 0.92557 0.89484 0.93120 0.92622 0.89301 0.87912 0.90745 0.93762 0.94887 0.92403 0.76061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.07 37.16 0.34 -0.85 16 2 C -0.11 -1.07 2.73 -90.62 -0.25 -1.32 16 3 C -0.18 -2.47 7.39 37.16 0.27 -2.19 16 4 C 0.13 1.27 3.15 -68.23 -0.22 1.05 16 5 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 6 C 0.10 1.37 5.88 -4.34 -0.03 1.35 16 7 N -0.58 -11.15 1.32 -175.73 -0.23 -11.38 16 8 C 0.21 4.85 3.38 -5.19 -0.02 4.83 16 9 C -0.54 -14.84 9.94 -34.44 -0.34 -15.18 16 10 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 13 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 17 C 0.51 10.89 4.86 -11.32 -0.06 10.83 16 18 O -0.49 -12.68 16.69 -8.95 -0.15 -12.83 16 19 C 0.52 9.42 6.24 -11.32 -0.07 9.35 16 20 O -0.51 -10.86 17.88 -8.95 -0.16 -11.02 16 21 N -0.71 -8.77 4.51 -54.37 -0.24 -9.02 16 22 H 0.05 0.49 7.71 -51.93 -0.40 0.09 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.05 0.79 5.71 -51.93 -0.30 0.49 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.47 4.07 -51.93 -0.21 1.26 16 29 H 0.10 1.16 7.78 -51.93 -0.40 0.76 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 1.09 6.53 -51.93 -0.34 0.75 16 32 H 0.03 0.67 7.27 -51.93 -0.38 0.29 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 34 H 0.40 3.92 8.94 -40.82 -0.36 3.56 16 LS Contribution 273.89 15.07 4.13 4.13 Total: -1.00 -34.98 273.89 -5.53 -40.51 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.52 Total: -0.02 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.46 Total: 9.88 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.30 Total: -46.59 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.31 Total: -23.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.98 -5.53 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.270 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds