Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.08999 * 109.30706 * 304.60410 * 4 2 1 6 6 C 1.52626 * 109.30782 * 185.00129 * 4 2 1 7 7 N 1.46303 * 110.44888 * 292.20551 * 6 4 2 8 8 C 1.46502 * 120.02224 * 143.73088 * 7 6 4 9 9 C 1.50701 * 109.47270 * 89.99429 * 8 7 6 10 10 H 1.07993 * 119.99837 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99709 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99596 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 120.00259 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47001 * 89.99693 * 13 11 9 15 15 H 1.48497 * 109.47484 * 209.99810 * 13 11 9 16 16 H 1.48506 * 109.47297 * 330.00184 * 13 11 9 17 17 C 1.34984 * 119.95780 * 323.70138 * 7 6 4 18 18 O 1.21354 * 120.62500 * 181.17358 * 17 7 6 19 19 C 1.49818 * 118.74229 * 1.15793 * 17 7 6 20 20 O 1.21352 * 120.62833 * 198.60731 * 19 17 7 21 21 N 1.34987 * 118.74124 * 18.58922 * 19 17 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.30681 * 52.50467 * 6 4 2 30 30 H 1.09001 * 109.31018 * 171.90295 * 6 4 2 31 31 H 1.08997 * 109.46803 * 209.99828 * 8 7 6 32 32 H 1.09006 * 109.47019 * 329.99859 * 8 7 6 33 33 H 0.97003 * 119.99843 * 180.02562 * 12 11 9 34 34 H 0.97001 * 120.02133 * 181.17461 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6094 -1.7218 -1.2887 6 6 3.5611 -0.8288 -1.1842 7 7 4.1728 0.4946 -1.3068 8 6 5.3814 0.8170 -0.5442 9 6 6.5988 0.4569 -1.3564 10 1 6.4836 0.0310 -2.3420 11 6 7.8595 0.6723 -0.8413 12 7 8.9218 0.3585 -1.5502 13 14 8.0586 1.4096 0.8634 14 1 8.1033 0.3204 1.8717 15 1 9.3209 2.1896 0.9210 16 1 6.9098 2.3050 1.1527 17 6 3.6231 1.4182 -2.1234 18 8 4.1322 2.5124 -2.2504 19 6 2.3727 1.0668 -2.8701 20 8 2.0336 1.7066 -3.8438 21 7 1.6307 0.0246 -2.4394 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 3.8507 -1.2728 -0.2318 30 1 3.9126 -1.4648 -1.9966 31 1 5.3962 1.8837 -0.3207 32 1 5.3854 0.2504 0.3870 33 1 9.8088 0.5096 -1.1877 34 1 0.8268 -0.2298 -2.9189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261080775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = -80.528533 kcal Electronic energy + Delta-G solvation = -18348.595349 eV Core-core repulsion = 15474.049018 eV Total energy + Delta-G solvation = -2874.546332 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.52644 -39.40509 -38.97693 -36.18975 -34.60179 -34.05235 -30.85380 -29.99057 -27.93931 -26.23352 -24.75955 -23.46554 -21.62781 -19.41700 -19.22046 -19.04026 -18.24670 -17.51348 -16.88590 -16.41679 -15.83823 -15.51525 -15.35929 -14.92691 -14.50715 -14.40007 -14.14228 -13.76064 -13.58235 -13.18521 -12.95935 -12.71868 -12.46264 -12.45618 -12.24089 -11.97484 -11.80124 -11.71298 -11.61300 -10.81484 -10.67508 -10.33730 -9.45784 -8.33598 -6.40729 0.40013 1.34420 1.39945 1.49904 1.64854 1.97442 2.29490 2.32639 3.00580 3.27716 3.55904 3.79129 4.03557 4.26965 4.39665 4.55012 4.63312 4.69711 4.79093 4.84978 4.89874 4.97156 5.13173 5.23103 5.26440 5.37694 5.42884 5.47914 5.65487 5.77213 6.18721 6.31905 6.61665 6.66803 7.05860 7.24331 8.83471 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030295 B = 0.008316 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.032901 B = 3366.321577 C = 3714.451181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.182 4.182 4 C 0.129 3.871 5 H 0.172 0.828 6 C 0.085 3.915 7 N -0.574 5.574 8 C 0.223 3.777 9 C -0.544 4.544 10 H 0.026 0.974 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.949 3.051 14 H -0.243 1.243 15 H -0.287 1.287 16 H -0.252 1.252 17 C 0.500 3.500 18 O -0.556 6.556 19 C 0.522 3.478 20 O -0.550 6.550 21 N -0.681 5.681 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.116 0.884 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.269 0.731 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.399 -8.245 8.903 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.239 4.239 4 C 0.025 3.975 5 H 0.189 0.811 6 C -0.036 4.036 7 N -0.308 5.308 8 C 0.101 3.899 9 C -0.583 4.583 10 H 0.044 0.956 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.771 3.229 14 H -0.166 1.166 15 H -0.213 1.213 16 H -0.176 1.176 17 C 0.282 3.718 18 O -0.432 6.432 19 C 0.303 3.697 20 O -0.426 6.426 21 N -0.338 5.338 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -17.952 -7.310 8.428 21.137 hybrid contribution 0.657 0.720 -0.249 1.006 sum -17.296 -6.591 8.179 20.235 Atomic orbital electron populations 1.21800 0.93055 1.03378 1.01638 1.21626 0.97511 0.94674 0.98277 1.22541 1.02437 0.98348 1.00612 1.21971 0.93171 0.98646 0.83717 0.81113 1.22294 0.92092 0.82854 1.06399 1.48220 1.27079 1.13926 1.41604 1.19547 0.81412 0.96863 0.92032 1.21543 0.91373 1.42564 1.02774 0.95588 1.25895 0.95036 0.95020 1.02721 1.70061 0.98902 1.49381 1.40161 0.85702 0.78350 0.79825 0.79048 1.16621 1.21337 1.17589 1.20594 0.85490 0.85422 0.80245 1.90719 1.63557 1.24946 1.64027 1.20381 0.84530 0.81077 0.83743 1.90742 1.71389 1.52625 1.27811 1.45993 1.28101 1.29701 1.30007 0.93849 0.89505 0.92448 0.86644 0.95767 0.91732 0.92248 0.84709 0.90794 0.95979 0.90949 0.92219 0.73727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.07 71.98 0.65 -0.94 16 2 C -0.10 -1.54 2.73 -10.79 -0.03 -1.57 16 3 C -0.18 -4.70 7.39 71.98 0.53 -4.17 16 4 C 0.13 1.96 3.15 44.90 0.14 2.11 16 5 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 6 C 0.09 2.02 5.88 86.29 0.51 2.52 16 7 N -0.57 -21.86 1.32 -828.14 -1.09 -22.96 16 8 C 0.22 10.05 3.38 85.63 0.29 10.34 16 9 C -0.54 -31.03 9.94 25.60 0.25 -30.77 16 10 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 11 C 0.01 0.66 5.47 84.66 0.46 1.13 16 12 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 13 Si 0.95 42.32 27.47 68.60 1.88 44.20 16 14 H -0.24 -9.58 7.11 99.48 0.71 -8.88 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 17 C 0.50 22.01 4.86 87.35 0.42 22.44 16 18 O -0.56 -30.70 16.69 10.55 0.18 -30.52 16 19 C 0.52 19.14 6.24 87.35 0.54 19.69 16 20 O -0.55 -24.37 17.88 10.56 0.19 -24.18 16 21 N -0.68 -14.88 4.51 -444.16 -2.00 -16.89 16 22 H 0.04 0.60 7.71 -2.39 -0.02 0.59 16 23 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.12 1.24 8.13 -2.39 -0.02 1.22 16 26 H 0.02 0.74 5.71 -2.39 -0.01 0.72 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.90 4.07 -2.39 -0.01 1.89 16 29 H 0.13 2.37 7.78 -2.39 -0.02 2.35 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.02 1.11 6.53 -2.39 -0.02 1.09 16 32 H 0.07 2.72 7.27 -2.38 -0.02 2.71 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.42 6.68 8.94 -92.71 -0.83 5.86 16 Total: -1.00 -84.90 273.89 3.47 -81.43 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.23 Total: 6.81 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 3.78 Total: 20.77 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -2.79 Total: -98.50 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: 0.36 Total: -54.71 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -84.90 3.47 -81.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.904 kcal (2) G-P(sol) polarization free energy of solvation -84.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds