Wall clock time and date at job start Mon Mar 30 2020 04:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 N 1.46504 * 109.47208 * 119.99672 * 2 1 3 5 5 C 1.34774 * 124.17596 * 119.99921 * 4 2 1 6 6 O 1.21228 * 127.15742 * 359.70583 * 5 4 2 7 7 C 1.51580 * 105.68343 * 179.97438 * 5 4 2 8 8 H 1.09002 * 110.59530 * 118.52828 * 7 5 4 9 9 C 1.52991 * 110.60203 * 241.47262 * 7 5 4 10 10 N 1.47315 * 103.59511 * 0.02562 * 7 5 4 11 11 C 1.46497 * 126.69175 * 180.02562 * 10 7 5 12 12 C 1.50704 * 109.47202 * 269.98200 * 11 10 7 13 13 H 1.08000 * 120.00067 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00306 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99941 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47105 * 59.99904 * 16 14 12 18 18 H 1.48502 * 109.46977 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46683 * 299.99727 * 16 14 12 20 20 C 1.33791 * 124.17870 * 299.96058 * 4 2 1 21 21 O 1.21532 * 123.77167 * 0.03185 * 20 4 2 22 22 H 1.09003 * 109.46750 * 299.99830 * 1 2 3 23 23 H 1.08996 * 109.47341 * 60.00402 * 1 2 3 24 24 H 1.09003 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47573 * 239.99777 * 2 1 3 26 26 H 1.09002 * 109.47456 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46479 * 299.99756 * 3 2 1 28 28 H 1.08995 * 109.47269 * 60.00113 * 3 2 1 29 29 H 1.08999 * 109.47317 * 58.54987 * 9 7 5 30 30 H 1.09001 * 109.47586 * 178.54704 * 9 7 5 31 31 H 1.08997 * 109.47236 * 298.54983 * 9 7 5 32 32 H 1.09001 * 109.47245 * 29.98096 * 11 10 7 33 33 H 1.08997 * 109.47084 * 149.98093 * 11 10 7 34 34 H 0.97006 * 120.00201 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7963 -1.7908 1.1707 6 8 3.2043 -2.3765 0.1908 7 6 3.0494 -2.1475 2.6220 8 1 2.6508 -3.1363 2.8490 9 6 4.5446 -2.0824 2.9395 10 7 2.3153 -1.1098 3.3667 11 6 2.2229 -0.9774 4.8227 12 6 1.0314 -1.7527 5.3231 13 1 0.4058 -2.2907 4.6262 14 6 0.7406 -1.7761 6.6706 15 7 1.5027 -1.1215 7.5193 16 14 -0.7359 -2.7378 7.2909 17 1 -0.5796 -4.1704 6.9326 18 1 -0.8296 -2.6034 8.7668 19 1 -1.9726 -2.2033 6.6662 20 6 1.7477 -0.3065 2.4489 21 8 1.0648 0.6597 2.7267 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9562 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 4.9172 -1.0797 2.7303 30 1 4.7031 -2.3166 3.9922 31 1 5.0788 -2.8047 2.3222 32 1 3.1304 -1.3698 5.2816 33 1 2.1084 0.0742 5.0854 34 1 1.2978 -1.1377 8.4673 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:37 Heat of formation + Delta-G solvation = -69.329856 kcal Electronic energy + Delta-G solvation = -18021.636223 eV Core-core repulsion = 15147.575502 eV Total energy + Delta-G solvation = -2874.060721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.38446 -39.61435 -37.84448 -36.95924 -35.18170 -33.26012 -31.95503 -29.14514 -28.21177 -26.04492 -25.37047 -23.20849 -22.52896 -20.63691 -18.78223 -18.35903 -17.78611 -17.14839 -16.77766 -16.67093 -15.59362 -15.47419 -15.22331 -15.13912 -14.60536 -14.27440 -13.92182 -13.66945 -13.38623 -13.26785 -13.18694 -13.00331 -12.75081 -12.58584 -12.39916 -12.32896 -12.19608 -11.80611 -11.42240 -10.99023 -10.80295 -10.64325 -9.73369 -8.24919 -6.39265 0.62838 1.23080 1.40405 1.42968 1.50670 2.06499 2.14421 2.40862 3.05521 3.08869 3.64619 3.92421 3.99570 4.04911 4.11884 4.32014 4.40527 4.68491 4.72396 4.75081 4.81568 4.82094 5.03961 5.04637 5.18276 5.20214 5.23703 5.44042 5.53113 5.77018 5.98867 6.29370 6.44971 6.67443 7.18937 7.35147 8.81882 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027261 B = 0.007707 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.858924 B = 3632.330165 C = 4028.297731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.573 5.573 5 C 0.534 3.466 6 O -0.493 6.493 7 C 0.084 3.916 8 H 0.132 0.868 9 C -0.136 4.136 10 N -0.607 5.607 11 C 0.295 3.705 12 C -0.554 4.554 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.921 5.921 16 Si 0.963 3.037 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.279 1.279 20 C 0.688 3.312 21 O -0.580 6.580 22 H 0.047 0.953 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.012 0.988 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -0.967 -12.923 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 C -0.216 4.216 4 N -0.319 5.319 5 C 0.323 3.677 6 O -0.366 6.366 7 C -0.023 4.023 8 H 0.149 0.851 9 C -0.194 4.194 10 N -0.344 5.344 11 C 0.176 3.824 12 C -0.592 4.592 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.560 5.560 16 Si 0.788 3.212 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.205 1.205 20 C 0.390 3.610 21 O -0.458 6.458 22 H 0.066 0.934 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.137 0.863 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.205 -0.673 -13.017 13.423 hybrid contribution -0.880 -0.235 0.790 1.206 sum 2.325 -0.908 -12.227 12.479 Atomic orbital electron populations 1.22136 0.93357 1.02465 1.03912 1.21538 0.95871 0.94359 0.84879 1.22123 1.01301 0.94272 1.03944 1.46741 1.48303 1.28776 1.08122 1.20977 0.76102 0.78974 0.91693 1.90721 1.51924 1.55046 1.38911 1.22257 0.97406 0.95352 0.87238 0.85054 1.21851 0.89585 1.03643 1.04311 1.48298 1.51001 1.27958 1.07107 1.18749 0.97067 0.96260 0.70329 1.21670 1.12714 1.31977 0.92878 0.92862 1.25718 0.99496 0.96372 0.96666 1.70001 1.39897 1.42611 1.03517 0.85529 0.79050 0.79363 0.77263 1.18728 1.20242 1.20457 1.16137 0.80600 0.83281 0.80954 1.90847 1.43031 1.29896 1.81977 0.93352 0.87646 0.92841 0.86271 0.92315 0.87772 0.93234 0.92165 0.90087 0.87973 0.93543 0.97035 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 9.19 71.98 0.66 -3.55 16 2 C 0.13 3.62 3.37 44.99 0.15 3.77 16 3 C -0.16 -3.91 9.19 71.98 0.66 -3.25 16 4 N -0.57 -19.52 2.51 -750.54 -1.88 -21.40 16 5 C 0.53 17.24 7.66 87.94 0.67 17.92 16 6 O -0.49 -16.26 17.51 -2.87 -0.05 -16.31 16 7 C 0.08 2.75 4.05 44.37 0.18 2.93 16 8 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 9 C -0.14 -3.57 9.39 71.98 0.68 -2.89 16 10 N -0.61 -25.61 2.72 -822.14 -2.24 -27.85 16 11 C 0.29 14.82 5.77 85.63 0.49 15.32 16 12 C -0.55 -30.26 9.39 25.60 0.24 -30.02 16 13 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 14 C 0.02 0.97 5.46 84.65 0.46 1.43 16 15 N -0.92 -52.48 13.29 21.44 0.28 -52.19 16 16 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C 0.69 29.12 7.73 179.44 1.39 30.50 16 21 O -0.58 -28.44 14.53 -3.82 -0.06 -28.49 16 22 H 0.05 1.60 6.70 -2.39 -0.02 1.58 16 23 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.12 2.76 7.64 -2.39 -0.02 2.74 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 28 H 0.05 1.54 6.70 -2.39 -0.02 1.53 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.17 7.60 -2.39 -0.02 2.15 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 2.29 7.48 -2.39 -0.02 2.27 16 33 H 0.01 0.66 8.03 -2.39 -0.02 0.64 16 34 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -65.55 289.87 4.76 -60.79 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.09 Total: 8.26 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 5.59 Total: 32.16 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -3.84 Total: -101.45 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.11 Total: -44.80 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.55 4.76 -60.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.539 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds