Wall clock time and date at job start Mon Mar 30 2020 04:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46968 * 2 1 4 4 C 1.45659 * 118.57382 * 270.01829 * 3 2 1 5 5 C 1.49906 * 111.22726 * 160.31823 * 4 3 2 6 6 O 1.21280 * 118.64429 * 199.91804 * 5 4 3 7 7 N 1.33658 * 122.71247 * 20.15159 * 5 4 3 8 8 C 1.46501 * 118.57542 * 179.85165 * 7 5 4 9 9 H 1.09004 * 109.47025 * 179.73088 * 8 7 5 10 10 C 1.52993 * 109.47706 * 59.72405 * 8 7 5 11 11 C 1.50708 * 109.46672 * 299.72306 * 8 7 5 12 12 H 1.07996 * 119.99958 * 5.43084 * 11 8 7 13 13 C 1.37877 * 119.99806 * 185.42579 * 11 8 7 14 14 N 1.31512 * 120.00217 * 184.94345 * 13 11 8 15 15 Si 1.86807 * 120.00059 * 5.21498 * 13 11 8 16 16 H 1.48500 * 109.47236 * 269.72420 * 15 13 11 17 17 H 1.48502 * 109.47018 * 29.72823 * 15 13 11 18 18 H 1.48505 * 109.46971 * 149.72524 * 15 13 11 19 19 C 1.45657 * 122.84849 * 359.55906 * 7 5 4 20 20 C 1.33657 * 118.57586 * 90.00324 * 3 2 1 21 21 O 1.21285 * 118.64422 * 0.11660 * 20 3 2 22 22 H 1.08999 * 109.47181 * 59.99700 * 1 2 3 23 23 H 1.08998 * 109.46818 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47110 * 300.00372 * 1 2 3 25 25 H 1.08993 * 109.47170 * 239.99982 * 2 1 3 26 26 H 1.08997 * 109.47139 * 119.99756 * 2 1 3 27 27 H 1.09000 * 109.11457 * 280.97862 * 4 3 2 28 28 H 1.09001 * 109.11213 * 40.11077 * 4 3 2 29 29 H 1.09003 * 109.46869 * 54.69752 * 10 8 7 30 30 H 1.09000 * 109.47706 * 174.69768 * 10 8 7 31 31 H 1.09005 * 109.47199 * 294.69941 * 10 8 7 32 32 H 0.96999 * 119.99607 * 355.27285 * 14 13 11 33 33 H 1.09004 * 109.11027 * 101.26583 * 19 7 5 34 34 H 1.09000 * 109.11766 * 220.32633 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2501 2.0382 -1.2792 5 6 2.2781 3.5292 -1.1264 6 8 2.0949 4.2178 -2.1078 7 7 2.5011 4.1311 0.0460 8 6 2.5120 5.5954 0.0910 9 1 2.7011 5.9261 1.1123 10 6 1.1567 6.1302 -0.3756 11 6 3.5971 6.1177 -0.8151 12 1 4.1581 5.4344 -1.4353 13 6 3.8735 7.4680 -0.8523 14 7 4.7517 7.9361 -1.7121 15 14 3.0062 8.6317 0.3238 16 1 1.7558 9.1291 -0.3042 17 1 2.6767 7.9113 1.5799 18 1 3.8966 9.7799 0.6307 19 6 2.7277 3.3944 1.2819 20 6 2.2315 1.9840 1.1738 21 8 2.0147 1.3642 2.1935 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2027 1.6999 -1.6868 28 1 1.4506 1.7682 -1.9691 29 1 0.3633 5.6788 0.2202 30 1 1.1315 7.2130 -0.2533 31 1 1.0094 5.8798 -1.4262 32 1 5.2550 7.3249 -2.2725 33 1 3.7959 3.3813 1.4988 34 1 2.2052 3.8952 2.0969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261095249.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:09 Heat of formation + Delta-G solvation = -53.762484 kcal Electronic energy + Delta-G solvation = -18100.976687 eV Core-core repulsion = 15227.591019 eV Total energy + Delta-G solvation = -2873.385669 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83001 -38.81873 -36.05884 -35.30902 -33.20668 -31.55203 -30.00358 -28.23759 -26.43934 -24.72921 -23.71489 -21.92376 -19.95644 -18.28537 -17.39164 -17.28720 -16.62755 -16.32253 -15.16443 -14.43741 -14.19116 -14.03254 -13.80633 -13.69501 -13.47171 -12.99186 -12.72559 -12.37738 -12.13446 -12.01084 -11.81339 -11.52098 -11.40986 -11.16790 -10.55938 -10.24599 -9.94794 -9.74889 -9.23374 -8.92015 -8.67970 -8.44505 -7.97456 -6.41636 -4.06060 2.47270 2.72631 3.24380 3.35317 3.37855 3.52892 3.55187 4.27623 4.45615 4.74967 4.90801 5.04448 5.23791 5.26292 5.28367 5.36630 5.46086 5.56800 5.63266 5.79505 6.03627 6.25775 6.28227 6.34433 6.58188 6.61040 7.06316 7.23302 7.38695 7.78577 7.96188 8.18389 8.41499 8.72985 8.93968 9.62302 10.97488 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.007348 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.263034 B = 3809.797643 C = 4040.938977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.604 5.604 4 C 0.098 3.902 5 C 0.501 3.499 6 O -0.507 6.507 7 N -0.587 5.587 8 C 0.238 3.762 9 H 0.045 0.955 10 C -0.166 4.166 11 C -0.582 4.582 12 H 0.062 0.938 13 C 0.027 3.973 14 N -0.911 5.911 15 Si 1.053 2.947 16 H -0.283 1.283 17 H -0.280 1.280 18 H -0.288 1.288 19 C 0.101 3.899 20 C 0.515 3.485 21 O -0.545 6.545 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.268 0.732 33 H 0.099 0.901 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -13.490 4.263 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.339 5.339 4 C -0.028 4.028 5 C 0.286 3.714 6 O -0.381 6.381 7 N -0.322 5.322 8 C 0.137 3.863 9 H 0.062 0.938 10 C -0.224 4.224 11 C -0.621 4.621 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.546 5.546 15 Si 0.883 3.117 16 H -0.210 1.210 17 H -0.206 1.206 18 H -0.215 1.215 19 C -0.025 4.025 20 C 0.303 3.697 21 O -0.422 6.422 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.784 -11.823 4.662 14.406 hybrid contribution 0.239 -1.672 -0.524 1.768 sum -6.545 -13.495 4.138 15.558 Atomic orbital electron populations 1.22108 0.95662 1.02195 1.02601 1.21511 0.94722 0.82020 1.03458 1.47464 1.65693 1.14831 1.05924 1.21635 1.04237 0.90882 0.86020 1.19602 0.78871 0.88907 0.84037 1.90784 1.47957 1.63319 1.36080 1.47596 1.69715 1.09049 1.05827 1.19445 0.94960 0.73949 0.97945 0.93782 1.22484 0.96998 0.99747 1.03189 1.22130 1.18763 0.95142 1.26035 0.92017 1.25673 0.97263 0.96692 0.98075 1.70776 1.24597 1.38046 1.21151 0.83891 0.75798 0.76071 0.75914 1.20970 1.20642 1.21505 1.21350 1.03213 0.88089 0.89887 1.20310 0.77145 0.89138 0.83084 1.90715 1.52112 1.65213 1.34159 0.92445 0.91500 0.92124 0.90318 0.89340 0.88677 0.87546 0.95746 0.93173 0.90545 0.92222 0.88343 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.23 37.16 0.38 -1.27 16 2 C 0.11 1.10 5.98 -4.04 -0.02 1.08 16 3 N -0.60 -8.10 2.81 -176.86 -0.50 -8.60 16 4 C 0.10 1.36 6.46 -6.03 -0.04 1.32 16 5 C 0.50 9.77 6.84 -11.87 -0.08 9.69 16 6 O -0.51 -12.07 13.57 5.56 0.08 -12.00 16 7 N -0.59 -11.61 2.78 -170.57 -0.47 -12.09 16 8 C 0.24 5.51 2.19 -69.08 -0.15 5.36 16 9 H 0.04 0.98 6.31 -51.93 -0.33 0.66 16 10 C -0.17 -3.71 8.59 37.15 0.32 -3.39 16 11 C -0.58 -16.19 7.92 -34.44 -0.27 -16.46 16 12 H 0.06 1.91 7.45 -52.49 -0.39 1.52 16 13 C 0.03 0.79 5.43 -17.82 -0.10 0.69 16 14 N -0.91 -28.16 13.70 55.43 0.76 -27.40 16 15 Si 1.05 24.98 25.29 -169.99 -4.30 20.68 16 16 H -0.28 -6.48 6.82 56.52 0.39 -6.10 16 17 H -0.28 -5.98 6.35 56.52 0.36 -5.63 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 C 0.10 1.62 6.39 -6.03 -0.04 1.58 16 20 C 0.52 7.97 7.58 -11.87 -0.09 7.88 16 21 O -0.54 -9.41 16.32 5.55 0.09 -9.32 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 26 H 0.09 0.99 7.24 -51.93 -0.38 0.62 16 27 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.11 1.27 8.11 -51.93 -0.42 0.85 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.12 4.42 -51.93 -0.23 0.89 16 31 H 0.08 1.86 6.13 -51.93 -0.32 1.54 16 32 H 0.27 8.33 8.72 -40.82 -0.36 7.98 16 33 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.11 1.62 8.04 -51.93 -0.42 1.20 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -33.50 275.66 -4.93 -38.43 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.64 Total: -0.34 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.09 Total: 6.48 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.21 Total: -48.09 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.17 Total: -21.32 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.30 Total: 20.68 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.50 -4.93 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095249.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.332 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds