Wall clock time and date at job start Mon Mar 30 2020 04:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.26316 * 114.23684 * 59.75194 * 12 2 1 14 14 O 1.21287 * 110.52291 * 15.86273 * 13 12 2 15 15 C 1.49357 * 139.04284 * 195.49926 * 13 12 2 16 16 C 1.53593 * 109.18907 * 310.88172 * 15 13 12 17 17 N 1.45008 * 109.18670 * 56.09605 * 16 15 13 18 18 C 1.26317 * 140.18878 * 307.99369 * 17 16 15 19 19 O 1.21288 * 114.93076 * 197.75011 * 18 17 16 20 20 C 1.44653 * 114.23234 * 239.99626 * 12 2 1 21 21 H 1.08998 * 108.50310 * 61.11505 * 20 12 2 22 22 C 1.52994 * 108.50285 * 303.49434 * 20 12 2 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.59908 * 190.89672 * 15 13 12 28 28 H 1.08992 * 109.42894 * 70.76206 * 15 13 12 29 29 H 1.09006 * 109.51579 * 296.18216 * 16 15 13 30 30 H 1.08997 * 109.51702 * 176.01106 * 16 15 13 31 31 H 0.96998 * 109.90460 * 128.01422 * 17 16 15 32 32 H 1.08997 * 109.47051 * 60.00093 * 22 20 12 33 33 H 1.08998 * 109.47282 * 180.02562 * 22 20 12 34 34 H 1.09002 * 109.46918 * 300.00427 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6441 -1.8935 1.2895 14 8 1.2259 -2.2926 0.2233 15 6 1.5676 -2.9744 2.3174 16 6 2.9217 -3.0869 3.0335 17 7 3.2723 -1.7969 3.5954 18 6 3.3831 -0.5865 3.2515 19 8 4.0345 0.1023 4.0080 20 6 2.8381 0.1287 2.0617 21 1 2.2400 0.9713 2.4086 22 6 4.0127 0.6724 1.2460 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7087 1.1612 -3.4844 27 1 1.3309 -3.9223 1.8342 28 1 0.7910 -2.7309 3.0424 29 1 3.6866 -3.3934 2.3199 30 1 2.8509 -3.8251 3.8323 31 1 3.4920 -1.8947 4.5351 32 1 3.6336 1.2704 0.4173 33 1 4.6420 1.2927 1.8841 34 1 4.5995 -0.1591 0.8554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261095362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:10 Heat of formation + Delta-G solvation = 2.337089 kcal Electronic energy + Delta-G solvation = -18625.010658 eV Core-core repulsion = 15754.057650 eV Total energy + Delta-G solvation = -2870.953009 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36141 -39.63252 -36.18153 -34.95383 -33.04899 -30.83097 -30.32549 -28.75516 -25.52775 -24.84157 -23.69846 -21.74833 -20.02729 -18.43048 -17.74442 -16.82164 -16.32085 -15.51311 -15.13776 -14.56162 -14.50688 -13.88057 -13.79315 -13.47690 -12.76520 -12.61803 -12.09427 -11.80848 -11.60245 -11.44755 -11.32225 -11.15101 -10.85669 -10.53634 -10.50247 -10.14500 -9.87786 -9.67356 -9.24222 -9.04366 -8.43806 -8.03311 -7.65594 -5.85495 -3.79674 2.71232 3.25005 3.41668 3.45435 3.50120 3.62080 3.79150 4.53971 4.60001 4.73215 4.96817 5.20607 5.37731 5.44840 5.50316 5.57270 5.77701 5.90734 6.20107 6.25755 6.51364 6.65207 6.78583 6.98309 7.08310 7.18207 7.58693 7.75095 7.89916 8.17894 8.19240 8.35983 8.68928 9.11731 9.34449 9.75557 11.21300 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.008998 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.345339 B = 3111.016577 C = 3364.505879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.260 3.740 3 H 0.048 0.952 4 C -0.456 4.456 5 H 0.060 0.940 6 C 0.047 3.953 7 N -0.907 5.907 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.282 1.282 12 N -0.561 5.561 13 C 0.462 3.538 14 O -0.532 6.532 15 C -0.129 4.129 16 C 0.114 3.886 17 N -0.701 5.701 18 C 0.533 3.467 19 O -0.577 6.577 20 C 0.125 3.875 21 H 0.100 0.900 22 C -0.149 4.149 23 H 0.050 0.950 24 H 0.000 1.000 25 H 0.093 0.907 26 H 0.258 0.742 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.383 0.617 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -5.318 11.533 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.495 4.495 5 H 0.078 0.922 6 C -0.151 4.151 7 N -0.549 5.549 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.208 1.208 12 N -0.292 5.292 13 C 0.246 3.754 14 O -0.411 6.411 15 C -0.170 4.170 16 C -0.010 4.010 17 N -0.345 5.345 18 C 0.319 3.681 19 O -0.459 6.459 20 C 0.018 3.982 21 H 0.118 0.882 22 C -0.207 4.207 23 H 0.069 0.931 24 H 0.019 0.981 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.214 0.786 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.675 -5.071 10.862 12.282 hybrid contribution 0.219 -0.620 -0.429 0.785 sum 2.894 -5.692 10.433 12.232 Atomic orbital electron populations 1.22112 0.97926 1.01038 1.00023 1.19055 0.91639 0.91906 0.81308 0.93486 1.21066 1.29042 1.10344 0.89042 0.92186 1.24843 0.96207 0.95348 0.98718 1.69841 1.38279 1.23594 1.23208 0.86580 0.78705 0.79821 0.82340 1.20555 1.21668 1.20762 1.45907 1.47676 1.10922 1.24714 1.18032 0.82906 0.83234 0.91189 1.90997 1.46794 1.75746 1.27564 1.22215 0.97649 0.99124 0.98009 1.21617 0.97103 0.82872 0.99390 1.44004 1.66704 1.07017 1.16782 1.18044 0.80084 0.81845 0.88131 1.90827 1.40787 1.62683 1.51558 1.20580 0.94330 0.94168 0.89151 0.88193 1.22121 0.96239 1.01919 1.00435 0.93107 0.98065 0.88848 0.93225 0.86924 0.89591 0.90469 0.88349 0.78569 0.89407 0.91342 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 8.78 37.16 0.33 -3.47 16 2 C 0.26 6.38 1.84 -69.08 -0.13 6.25 16 3 H 0.05 1.19 6.11 -51.93 -0.32 0.87 16 4 C -0.46 -12.61 6.82 -34.44 -0.23 -12.84 16 5 H 0.06 1.74 6.76 -52.48 -0.35 1.39 16 6 C 0.05 1.33 5.30 -17.82 -0.09 1.23 16 7 N -0.91 -26.04 11.32 55.43 0.63 -25.42 16 8 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.56 -11.46 2.46 -168.10 -0.41 -11.87 16 13 C 0.46 9.14 6.37 -15.19 -0.10 9.04 16 14 O -0.53 -13.08 10.60 5.55 0.06 -13.03 16 15 C -0.13 -1.73 6.08 -28.22 -0.17 -1.90 16 16 C 0.11 1.17 7.04 -4.53 -0.03 1.14 16 17 N -0.70 -8.76 4.62 -65.36 -0.30 -9.07 16 18 C 0.53 8.51 7.03 -15.29 -0.11 8.40 16 19 O -0.58 -10.43 16.68 5.55 0.09 -10.34 16 20 C 0.13 2.22 2.98 -70.82 -0.21 2.01 16 21 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 22 C -0.15 -2.62 8.83 37.15 0.33 -2.30 16 23 H 0.05 1.31 6.15 -51.93 -0.32 0.99 16 24 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 25 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 27 H 0.11 1.43 7.89 -51.93 -0.41 1.02 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.38 4.00 8.00 -40.82 -0.33 3.67 16 32 H 0.09 1.68 6.30 -51.93 -0.33 1.35 16 33 H 0.07 1.10 7.72 -51.93 -0.40 0.70 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 269.74 15.07 4.06 4.06 Total: -1.00 -33.20 269.74 -5.76 -38.96 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.44 Total: 1.75 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.42 Total: 7.56 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.09 Total: -46.35 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.15 Total: -23.36 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.20 -5.76 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.292 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds