Wall clock time and date at job start Mon Mar 30 2020 04:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.26316 * 114.23684 * 59.75194 * 12 2 1 14 14 O 1.21287 * 110.52291 * 15.86273 * 13 12 2 15 15 C 1.49357 * 139.04284 * 195.49926 * 13 12 2 16 16 C 1.53593 * 109.18907 * 310.88172 * 15 13 12 17 17 N 1.45008 * 109.18670 * 56.09605 * 16 15 13 18 18 C 1.26317 * 140.18878 * 307.99369 * 17 16 15 19 19 O 1.21288 * 114.93076 * 197.75011 * 18 17 16 20 20 C 1.44653 * 114.23234 * 239.99626 * 12 2 1 21 21 H 1.08998 * 108.50310 * 61.11505 * 20 12 2 22 22 C 1.52994 * 108.50285 * 303.49434 * 20 12 2 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.59908 * 190.89672 * 15 13 12 28 28 H 1.08992 * 109.42894 * 70.76206 * 15 13 12 29 29 H 1.09006 * 109.51579 * 296.18216 * 16 15 13 30 30 H 1.08997 * 109.51702 * 176.01106 * 16 15 13 31 31 H 0.96998 * 109.90460 * 128.01422 * 17 16 15 32 32 H 1.08997 * 109.47051 * 60.00093 * 22 20 12 33 33 H 1.08998 * 109.47282 * 180.02562 * 22 20 12 34 34 H 1.09002 * 109.46918 * 300.00427 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6441 -1.8935 1.2895 14 8 1.2259 -2.2926 0.2233 15 6 1.5676 -2.9744 2.3174 16 6 2.9217 -3.0869 3.0335 17 7 3.2723 -1.7969 3.5954 18 6 3.3831 -0.5865 3.2515 19 8 4.0345 0.1023 4.0080 20 6 2.8381 0.1287 2.0617 21 1 2.2400 0.9713 2.4086 22 6 4.0127 0.6724 1.2460 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7087 1.1612 -3.4844 27 1 1.3309 -3.9223 1.8342 28 1 0.7910 -2.7309 3.0424 29 1 3.6866 -3.3934 2.3199 30 1 2.8509 -3.8251 3.8323 31 1 3.4920 -1.8947 4.5351 32 1 3.6336 1.2704 0.4173 33 1 4.6420 1.2927 1.8841 34 1 4.5995 -0.1591 0.8554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261095362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:10 Heat of formation + Delta-G solvation = -22.189382 kcal Electronic energy + Delta-G solvation = -18626.074206 eV Core-core repulsion = 15754.057650 eV Total energy + Delta-G solvation = -2872.016556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.78287 -41.07075 -37.49760 -36.39590 -35.03889 -32.35164 -31.74816 -30.49953 -27.33783 -26.45280 -25.06215 -23.44186 -21.47014 -19.87004 -18.95496 -18.55531 -17.79925 -16.96017 -16.76615 -16.21052 -16.05668 -15.49866 -15.20246 -14.67815 -14.56608 -14.09436 -13.55249 -13.37378 -13.16607 -13.06698 -12.99910 -12.78924 -12.50654 -12.40478 -12.27935 -12.03242 -11.84640 -11.12345 -10.99372 -10.47980 -10.32604 -9.85289 -9.42756 -7.99832 -5.98426 1.38977 1.42211 1.47294 1.48995 2.10497 2.17565 2.26173 2.52247 3.27091 3.30530 3.72591 3.90877 4.08469 4.12067 4.34648 4.46018 4.69527 4.77095 4.79270 4.84827 4.90756 4.95939 5.16704 5.20920 5.30561 5.60061 5.69034 5.85345 6.06768 6.32937 6.46111 6.88782 6.99424 7.10136 7.55432 7.82791 9.04800 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.008998 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.345339 B = 3111.016577 C = 3364.505879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.263 3.737 3 H 0.037 0.963 4 C -0.456 4.456 5 H 0.041 0.959 6 C -0.001 4.001 7 N -0.928 5.928 8 Si 0.948 3.052 9 H -0.288 1.288 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.560 5.560 13 C 0.452 3.548 14 O -0.589 6.589 15 C -0.119 4.119 16 C 0.119 3.881 17 N -0.689 5.689 18 C 0.539 3.461 19 O -0.601 6.601 20 C 0.119 3.881 21 H 0.106 0.894 22 C -0.141 4.141 23 H 0.035 0.965 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.257 0.743 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.400 0.600 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -6.742 13.470 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.162 3.838 3 H 0.054 0.946 4 C -0.495 4.495 5 H 0.059 0.941 6 C -0.197 4.197 7 N -0.571 5.571 8 Si 0.776 3.224 9 H -0.214 1.214 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.290 5.290 13 C 0.240 3.760 14 O -0.472 6.472 15 C -0.159 4.159 16 C -0.004 4.004 17 N -0.332 5.332 18 C 0.324 3.676 19 O -0.485 6.485 20 C 0.012 3.988 21 H 0.123 0.877 22 C -0.199 4.199 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.177 0.823 31 H 0.234 0.766 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.309 -6.523 12.843 14.780 hybrid contribution 0.006 -0.212 -1.008 1.030 sum 3.316 -6.736 11.835 14.015 Atomic orbital electron populations 1.21898 0.98211 0.99869 0.99768 1.18712 0.91358 0.91415 0.82309 0.94577 1.21184 1.28410 1.09411 0.90524 0.94117 1.25497 0.96835 0.96209 1.01171 1.69944 1.39171 1.24533 1.23497 0.85764 0.78584 0.78279 0.79791 1.21391 1.20933 1.19900 1.45791 1.47890 1.11450 1.23859 1.19402 0.80913 0.83331 0.92399 1.90978 1.49234 1.76708 1.30275 1.22153 1.00488 0.96500 0.96753 1.21918 0.94697 0.82622 1.01118 1.43867 1.65063 1.06531 1.17776 1.17536 0.80150 0.82929 0.86980 1.90830 1.41973 1.63702 1.51950 1.20715 0.93939 0.94493 0.89644 0.87666 1.22004 0.96397 1.01432 1.00047 0.94572 0.95805 0.91512 0.93368 0.86076 0.87086 0.90893 0.82317 0.76633 0.91564 0.89623 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.03 8.78 71.98 0.63 -6.40 16 2 C 0.26 13.16 1.84 44.25 0.08 13.24 16 3 H 0.04 1.89 6.11 -2.39 -0.01 1.88 16 4 C -0.46 -25.83 6.82 25.60 0.17 -25.66 16 5 H 0.04 2.42 6.76 -2.91 -0.02 2.40 16 6 C 0.00 -0.08 5.30 84.65 0.45 0.37 16 7 N -0.93 -54.50 11.32 21.44 0.24 -54.26 16 8 Si 0.95 46.72 29.54 68.60 2.03 48.75 16 9 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 12 N -0.56 -22.70 2.46 -803.05 -1.98 -24.67 16 13 C 0.45 17.43 6.37 88.49 0.56 17.99 16 14 O -0.59 -29.21 10.60 -3.05 -0.03 -29.25 16 15 C -0.12 -2.77 6.08 29.63 0.18 -2.59 16 16 C 0.12 1.88 7.04 86.86 0.61 2.49 16 17 N -0.69 -14.55 4.62 -478.01 -2.21 -16.76 16 18 C 0.54 15.92 7.03 88.42 0.62 16.54 16 19 O -0.60 -20.34 16.68 -3.05 -0.05 -20.39 16 20 C 0.12 4.10 2.98 44.10 0.13 4.24 16 21 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 22 C -0.14 -4.95 8.83 71.98 0.64 -4.32 16 23 H 0.04 1.90 6.15 -2.39 -0.01 1.88 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.12 2.69 7.89 -2.39 -0.02 2.68 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.40 6.48 8.00 -92.71 -0.74 5.74 16 32 H 0.07 2.60 6.30 -2.39 -0.02 2.58 16 33 H 0.09 2.69 7.72 -2.39 -0.02 2.67 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.23 269.74 2.46 -71.77 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.38 Total: 8.91 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 4.08 Total: 15.90 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -3.94 Total: -95.69 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.08 Total: -49.64 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.23 2.46 -71.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds