Wall clock time and date at job start Mon Mar 30 2020 04:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47347 * 2 1 4 4 C 1.50701 * 109.46691 * 240.00633 * 2 1 3 5 5 H 1.08002 * 120.00409 * 335.19198 * 4 2 1 6 6 C 1.37884 * 119.99730 * 155.19279 * 4 2 1 7 7 N 1.31522 * 119.99745 * 184.51341 * 6 4 2 8 8 Si 1.86795 * 120.00171 * 4.50892 * 6 4 2 9 9 H 1.48504 * 109.46679 * 84.65753 * 8 6 4 10 10 H 1.48496 * 109.47128 * 204.65256 * 8 6 4 11 11 H 1.48492 * 109.47330 * 324.65887 * 8 6 4 12 12 N 1.46500 * 109.47484 * 120.00761 * 2 1 3 13 13 C 1.26315 * 114.23282 * 59.74765 * 12 2 1 14 14 O 1.21283 * 110.52570 * 15.87022 * 13 12 2 15 15 C 1.49358 * 139.03860 * 195.49388 * 13 12 2 16 16 C 1.53586 * 109.19194 * 310.89127 * 15 13 12 17 17 N 1.45010 * 109.18563 * 56.09573 * 16 15 13 18 18 C 1.26313 * 140.19479 * 307.98825 * 17 16 15 19 19 O 1.21279 * 114.93713 * 197.75995 * 18 17 16 20 20 C 1.44652 * 114.23250 * 239.99922 * 12 2 1 21 21 H 1.08997 * 108.50198 * 303.48901 * 20 12 2 22 22 C 1.52998 * 108.50233 * 61.10868 * 20 12 2 23 23 H 1.09002 * 109.46772 * 294.22707 * 1 2 3 24 24 H 1.08991 * 109.47245 * 174.22622 * 1 2 3 25 25 H 1.09002 * 109.47051 * 54.21761 * 1 2 3 26 26 H 0.96998 * 120.00088 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.60009 * 190.89794 * 15 13 12 28 28 H 1.09001 * 109.35973 * 70.73600 * 15 13 12 29 29 H 1.09001 * 109.52134 * 296.17707 * 16 15 13 30 30 H 1.09007 * 109.51787 * 176.00842 * 16 15 13 31 31 H 0.97005 * 109.90144 * 128.01793 * 17 16 15 32 32 H 1.09003 * 109.47271 * 60.00222 * 22 20 12 33 33 H 1.08999 * 109.46924 * 179.97438 * 22 20 12 34 34 H 1.08991 * 109.47239 * 300.00111 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 1.4118 -1.4462 -1.7205 6 6 3.2840 -0.4207 -1.7311 7 7 3.6873 -0.9740 -2.8540 8 14 4.4068 0.7576 -0.8144 9 1 5.1473 0.0172 0.2386 10 1 5.3726 1.3625 -1.7664 11 1 3.5931 1.8294 -0.1867 12 7 2.0184 -0.6908 1.1961 13 6 1.6442 -1.8936 1.2893 14 8 1.2260 -2.2927 0.2230 15 6 1.5678 -2.9746 2.3170 16 6 2.9219 -3.0872 3.0330 17 7 3.2724 -1.7972 3.5951 18 6 3.3833 -0.5868 3.2514 19 8 4.0348 0.1019 4.0078 20 6 2.8382 0.1285 2.0616 21 1 3.6750 0.5159 1.4805 22 6 1.9987 1.3112 2.5487 23 1 -0.3633 0.4217 0.9372 24 1 -0.3633 -1.0224 -0.1034 25 1 -0.3633 0.6009 -0.8337 26 1 4.5677 -0.7701 -3.2063 27 1 1.3310 -3.9225 1.8338 28 1 0.7914 -2.7298 3.0419 29 1 3.6868 -3.3936 2.3195 30 1 2.8512 -3.8254 3.8319 31 1 3.4923 -1.8952 4.5348 32 1 1.1329 0.9407 3.0977 33 1 2.6020 1.9397 3.2037 34 1 1.6629 1.8956 1.6921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261095368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:17 Heat of formation + Delta-G solvation = 4.690086 kcal Electronic energy + Delta-G solvation = -18946.684867 eV Core-core repulsion = 16075.833892 eV Total energy + Delta-G solvation = -2870.850975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38251 -39.62211 -36.24993 -34.97248 -32.83958 -31.14191 -30.42191 -29.41345 -25.55816 -25.11189 -23.89800 -21.61866 -19.84942 -18.50310 -17.69084 -17.32450 -16.42526 -15.83733 -15.16966 -14.86946 -14.36791 -13.93644 -13.81357 -13.47774 -12.70442 -12.62451 -12.44947 -12.26582 -11.91929 -11.81898 -11.48175 -11.27651 -11.09745 -11.01727 -10.45484 -10.06530 -9.76937 -9.63250 -9.24306 -9.14926 -8.69652 -8.17515 -7.71367 -6.02503 -3.92314 2.70646 3.17294 3.21293 3.26116 3.32161 3.63366 3.76882 4.36671 4.53503 4.75598 5.01714 5.23294 5.32675 5.35651 5.39776 5.51183 5.82840 5.89984 5.99131 5.99559 6.20084 6.35058 6.43483 6.54134 6.55330 6.70699 7.22953 7.53392 7.60006 7.68478 8.18520 8.50597 8.70480 9.18717 9.42229 9.57446 11.09661 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.013097 C = 0.011293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.685001 B = 2137.314116 C = 2478.830032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.210 3.790 3 H 0.055 0.945 4 C -0.454 4.454 5 H 0.091 0.909 6 C 0.064 3.936 7 N -0.894 5.894 8 Si 0.857 3.143 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.562 5.562 13 C 0.467 3.533 14 O -0.533 6.533 15 C -0.131 4.131 16 C 0.112 3.888 17 N -0.700 5.700 18 C 0.535 3.465 19 O -0.578 6.578 20 C 0.107 3.893 21 H 0.099 0.901 22 C -0.152 4.152 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.262 0.738 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.383 0.617 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -1.212 13.302 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.113 3.887 3 H 0.072 0.928 4 C -0.493 4.493 5 H 0.109 0.891 6 C -0.138 4.138 7 N -0.534 5.534 8 Si 0.686 3.314 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.294 5.294 13 C 0.252 3.748 14 O -0.412 6.412 15 C -0.172 4.172 16 C -0.012 4.012 17 N -0.343 5.343 18 C 0.320 3.680 19 O -0.459 6.459 20 C -0.001 4.001 21 H 0.117 0.883 22 C -0.211 4.211 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.215 0.785 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.986 -1.072 12.631 13.023 hybrid contribution 1.057 0.429 0.922 1.467 sum -1.929 -0.643 13.553 13.704 Atomic orbital electron populations 1.21969 0.96778 1.02594 0.98646 1.19704 0.92380 0.92873 0.83777 0.92763 1.21300 1.01418 1.21261 1.05360 0.89069 1.25136 0.97980 0.96004 0.94639 1.69884 1.19618 1.44240 1.19663 0.87359 0.81729 0.82354 0.79925 1.20471 1.21364 1.18746 1.46791 1.47937 1.11004 1.23659 1.18115 0.82588 0.83009 0.91111 1.90916 1.46938 1.76007 1.27355 1.22289 0.97455 0.99369 0.98062 1.21650 0.97380 0.82686 0.99461 1.43975 1.66608 1.06969 1.16783 1.17933 0.80100 0.81943 0.88020 1.90812 1.40746 1.62711 1.51656 1.20839 0.96094 0.92982 0.90167 0.88328 1.22166 0.99732 0.96827 1.02338 0.95715 0.91239 0.92666 0.92800 0.86873 0.89714 0.90300 0.88298 0.78511 0.92147 0.90675 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.90 37.16 0.33 -2.58 16 2 C 0.21 4.86 1.40 -69.08 -0.10 4.76 16 3 H 0.05 1.24 4.04 -51.93 -0.21 1.03 16 4 C -0.45 -12.82 7.05 -34.44 -0.24 -13.06 16 5 H 0.09 2.92 7.19 -52.49 -0.38 2.55 16 6 C 0.06 1.85 5.47 -17.81 -0.10 1.75 16 7 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 8 Si 0.86 21.39 24.20 -169.99 -4.11 17.28 16 9 H -0.28 -6.97 6.77 56.52 0.38 -6.59 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.26 -5.99 6.06 56.52 0.34 -5.64 16 12 N -0.56 -11.74 2.25 -168.10 -0.38 -12.12 16 13 C 0.47 9.43 6.46 -15.19 -0.10 9.33 16 14 O -0.53 -13.08 10.63 5.56 0.06 -13.02 16 15 C -0.13 -1.82 6.07 -28.22 -0.17 -1.99 16 16 C 0.11 1.29 7.04 -4.54 -0.03 1.26 16 17 N -0.70 -9.76 4.62 -65.37 -0.30 -10.06 16 18 C 0.53 9.46 7.09 -15.29 -0.11 9.35 16 19 O -0.58 -11.31 16.52 5.56 0.09 -11.22 16 20 C 0.11 2.07 2.69 -70.82 -0.19 1.88 16 21 H 0.10 2.16 3.76 -51.93 -0.20 1.96 16 22 C -0.15 -2.48 8.89 37.16 0.33 -2.15 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 1.54 6.27 -51.93 -0.33 1.21 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.11 1.50 7.89 -51.93 -0.41 1.09 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.38 4.42 8.00 -40.82 -0.33 4.10 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.16 7.62 -51.93 -0.40 0.77 16 34 H 0.08 1.24 6.56 -51.93 -0.34 0.89 16 LS Contribution 261.67 15.07 3.94 3.94 Total: -1.00 -34.49 261.67 -4.63 -39.12 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.33 Total: 4.44 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.38 Total: 8.55 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.09 Total: -49.10 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.15 Total: -24.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.11 Total: 17.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.49 -4.63 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.812 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds