Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47496 * 2 1 4 4 C 1.53000 * 109.47283 * 120.00013 * 2 1 3 5 5 C 1.53002 * 109.47120 * 174.99769 * 4 2 1 6 6 H 1.08996 * 109.31085 * 55.38664 * 5 4 2 7 7 C 1.52655 * 109.31223 * 175.00100 * 5 4 2 8 8 N 1.46307 * 110.40527 * 67.99278 * 7 5 4 9 9 C 1.36120 * 120.00671 * 216.16391 * 8 7 5 10 10 H 1.08001 * 119.99668 * 155.97764 * 9 8 7 11 11 C 1.39584 * 119.99909 * 335.98073 * 9 8 7 12 12 N 1.31007 * 120.00465 * 345.33663 * 11 9 8 13 13 Si 1.86802 * 119.99627 * 165.33501 * 11 9 8 14 14 H 1.48505 * 109.47128 * 94.72339 * 13 11 9 15 15 H 1.48501 * 109.47130 * 214.71869 * 13 11 9 16 16 H 1.48497 * 109.47233 * 334.71909 * 13 11 9 17 17 C 1.34958 * 119.98142 * 36.19131 * 8 7 5 18 18 O 1.21506 * 120.58936 * 178.61179 * 17 8 7 19 19 C 1.49177 * 118.82125 * 358.88228 * 17 8 7 20 20 O 1.21445 * 120.58896 * 161.38035 * 19 17 8 21 21 N 1.34960 * 118.82145 * 341.39865 * 19 17 8 22 22 H 1.08997 * 109.47069 * 300.00133 * 1 2 3 23 23 H 1.09002 * 109.47182 * 59.99800 * 1 2 3 24 24 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47121 * 240.00193 * 2 1 3 26 26 H 1.08995 * 109.47587 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46661 * 299.99940 * 3 2 1 28 28 H 1.08997 * 109.47070 * 59.99868 * 3 2 1 29 29 H 1.08997 * 109.47277 * 55.00061 * 4 2 1 30 30 H 1.08999 * 109.47095 * 294.99854 * 4 2 1 31 31 H 1.09000 * 109.31083 * 307.70785 * 7 5 4 32 32 H 1.08997 * 109.31125 * 188.28384 * 7 5 4 33 33 H 0.97003 * 120.00525 * 180.02562 * 12 11 9 34 34 H 0.97003 * 120.01257 * 178.86498 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9929 0.1630 1.0595 7 6 4.0800 -1.4383 2.4902 8 7 3.6663 -2.8375 2.5994 9 6 3.3332 -3.3561 3.8131 10 1 2.6805 -4.2145 3.8727 11 6 3.8352 -2.7785 4.9804 12 7 4.8368 -1.9365 4.9165 13 14 3.0786 -3.2061 6.6340 14 1 3.8516 -4.3077 7.2620 15 1 3.1115 -2.0125 7.5169 16 1 1.6715 -3.6379 6.4377 17 6 3.6157 -3.6138 1.4966 18 8 3.2979 -4.7837 1.5781 19 6 3.9627 -3.0116 0.1767 20 8 4.2568 -3.7177 -0.7666 21 7 3.9443 -1.6681 0.0495 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1369 31 1 3.6782 -0.8767 3.3336 32 1 5.1684 -1.3816 2.5086 33 1 5.1859 -1.5354 5.7278 34 1 4.1830 -1.2575 -0.7963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = -75.727591 kcal Electronic energy + Delta-G solvation = -18161.335925 eV Core-core repulsion = 15286.997778 eV Total energy + Delta-G solvation = -2874.338147 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.16459 -37.31222 -37.10942 -35.11897 -33.72035 -31.54707 -29.57002 -27.14987 -26.36561 -25.64623 -22.91859 -21.93868 -19.96420 -18.07058 -17.40958 -17.02581 -16.21835 -15.49669 -15.02736 -14.61994 -14.14885 -14.03106 -13.89932 -13.38776 -13.06880 -12.62857 -12.37203 -12.13902 -11.85102 -11.69515 -11.61735 -11.38085 -11.04836 -10.67155 -10.59907 -10.50952 -10.45775 -10.32196 -10.08209 -9.21720 -8.71233 -8.34847 -7.93371 -6.60343 -4.07894 2.47596 3.09123 3.15058 3.20531 3.64471 3.93536 4.23776 4.54130 4.82427 4.91967 5.02608 5.03657 5.32438 5.40727 5.50099 5.66799 5.72503 5.82433 5.89685 5.97931 6.06463 6.16366 6.28848 6.49690 6.50514 6.56065 6.85215 7.13666 7.33030 7.51127 7.88458 8.24112 8.58351 8.95791 9.11790 9.74059 10.43780 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.009428 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.972807 B = 2969.034548 C = 3634.585893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.128 4.128 5 C 0.116 3.884 6 H 0.099 0.901 7 C 0.121 3.879 8 N -0.408 5.408 9 C -0.310 4.310 10 H 0.105 0.895 11 C 0.037 3.963 12 N -0.866 5.866 13 Si 0.929 3.071 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.420 3.580 18 O -0.553 6.553 19 C 0.519 3.481 20 O -0.529 6.529 21 N -0.719 5.719 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.275 0.725 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 11.184 -3.612 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.166 4.166 5 C 0.011 3.989 6 H 0.117 0.883 7 C -0.003 4.003 8 N -0.129 5.129 9 C -0.439 4.439 10 H 0.123 0.877 11 C -0.169 4.169 12 N -0.504 5.504 13 Si 0.755 3.245 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.205 3.795 18 O -0.435 6.435 19 C 0.303 3.697 20 O -0.403 6.403 21 N -0.376 5.376 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.170 10.218 -3.751 11.656 hybrid contribution -0.044 0.267 0.527 0.593 sum -4.214 10.486 -3.223 11.752 Atomic orbital electron populations 1.21810 0.95431 1.01762 1.01262 1.21116 0.95681 0.95989 0.98873 1.21903 1.01011 0.96108 1.01492 1.22121 0.94959 1.01746 0.97820 1.21766 0.95388 0.94791 0.86994 0.88328 1.21713 1.00440 0.83609 0.94566 1.43558 1.54984 1.07797 1.06586 1.19745 1.27149 1.15875 0.81089 0.87730 1.25498 0.94723 0.96458 1.00230 1.69777 1.21312 1.28978 1.30290 0.85863 0.79920 0.78237 0.80526 1.20063 1.20519 1.18992 1.19614 0.88567 0.86919 0.84391 1.90629 1.52560 1.15529 1.84775 1.21068 0.76610 0.81848 0.90162 1.90694 1.47715 1.61332 1.40531 1.46335 1.70007 1.06299 1.14963 0.92716 0.93144 0.92716 0.91303 0.92559 0.93136 0.92576 0.91113 0.90498 0.87428 0.91019 0.91496 0.77168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.19 37.15 0.34 -1.31 16 2 C -0.10 -1.18 2.86 -90.62 -0.26 -1.44 16 3 C -0.15 -1.45 8.95 37.16 0.33 -1.12 16 4 C -0.13 -1.88 4.13 -26.73 -0.11 -1.99 16 5 C 0.12 1.79 3.02 -68.21 -0.21 1.58 16 6 H 0.10 1.19 6.35 -51.93 -0.33 0.86 16 7 C 0.12 2.42 4.21 -4.32 -0.02 2.40 16 8 N -0.41 -10.01 2.67 -115.74 -0.31 -10.32 16 9 C -0.31 -8.13 9.23 -15.15 -0.14 -8.27 16 10 H 0.11 2.90 7.48 -52.49 -0.39 2.50 16 11 C 0.04 0.90 4.98 -17.40 -0.09 0.81 16 12 N -0.87 -20.99 10.90 55.53 0.61 -20.39 16 13 Si 0.93 19.15 29.58 -169.99 -5.03 14.12 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 C 0.42 11.00 6.99 -11.63 -0.08 10.92 16 18 O -0.55 -16.68 16.80 -9.47 -0.16 -16.84 16 19 C 0.52 11.84 7.82 -11.63 -0.09 11.75 16 20 O -0.53 -13.48 17.87 -9.42 -0.17 -13.65 16 21 N -0.72 -12.18 4.59 -54.56 -0.25 -12.43 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.88 7.58 -51.92 -0.39 0.48 16 26 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.27 7.52 -51.93 -0.39 0.88 16 30 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 31 H 0.11 2.18 6.62 -51.93 -0.34 1.84 16 32 H 0.07 1.52 7.90 -51.93 -0.41 1.11 16 33 H 0.27 6.24 8.30 -40.82 -0.34 5.90 16 34 H 0.39 5.54 8.94 -40.82 -0.36 5.17 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -31.32 281.11 -6.02 -37.34 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.63 Total: 4.59 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -0.32 Total: 13.34 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.05 Total: -43.14 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.33 Total: -30.49 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.32 -6.02 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.383 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds