Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47496 * 2 1 4 4 C 1.53000 * 109.47283 * 120.00013 * 2 1 3 5 5 C 1.53002 * 109.47120 * 174.99769 * 4 2 1 6 6 H 1.08996 * 109.31085 * 55.38664 * 5 4 2 7 7 C 1.52655 * 109.31223 * 175.00100 * 5 4 2 8 8 N 1.46307 * 110.40527 * 67.99278 * 7 5 4 9 9 C 1.36120 * 120.00671 * 216.16391 * 8 7 5 10 10 H 1.08001 * 119.99668 * 155.97764 * 9 8 7 11 11 C 1.39584 * 119.99909 * 335.98073 * 9 8 7 12 12 N 1.31007 * 120.00465 * 345.33663 * 11 9 8 13 13 Si 1.86802 * 119.99627 * 165.33501 * 11 9 8 14 14 H 1.48505 * 109.47128 * 94.72339 * 13 11 9 15 15 H 1.48501 * 109.47130 * 214.71869 * 13 11 9 16 16 H 1.48497 * 109.47233 * 334.71909 * 13 11 9 17 17 C 1.34958 * 119.98142 * 36.19131 * 8 7 5 18 18 O 1.21506 * 120.58936 * 178.61179 * 17 8 7 19 19 C 1.49177 * 118.82125 * 358.88228 * 17 8 7 20 20 O 1.21445 * 120.58896 * 161.38035 * 19 17 8 21 21 N 1.34960 * 118.82145 * 341.39865 * 19 17 8 22 22 H 1.08997 * 109.47069 * 300.00133 * 1 2 3 23 23 H 1.09002 * 109.47182 * 59.99800 * 1 2 3 24 24 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47121 * 240.00193 * 2 1 3 26 26 H 1.08995 * 109.47587 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46661 * 299.99940 * 3 2 1 28 28 H 1.08997 * 109.47070 * 59.99868 * 3 2 1 29 29 H 1.08997 * 109.47277 * 55.00061 * 4 2 1 30 30 H 1.08999 * 109.47095 * 294.99854 * 4 2 1 31 31 H 1.09000 * 109.31083 * 307.70785 * 7 5 4 32 32 H 1.08997 * 109.31125 * 188.28384 * 7 5 4 33 33 H 0.97003 * 120.00525 * 180.02562 * 12 11 9 34 34 H 0.97003 * 120.01257 * 178.86498 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9929 0.1630 1.0595 7 6 4.0800 -1.4383 2.4902 8 7 3.6663 -2.8375 2.5994 9 6 3.3332 -3.3561 3.8131 10 1 2.6805 -4.2145 3.8727 11 6 3.8352 -2.7785 4.9804 12 7 4.8368 -1.9365 4.9165 13 14 3.0786 -3.2061 6.6340 14 1 3.8516 -4.3077 7.2620 15 1 3.1115 -2.0125 7.5169 16 1 1.6715 -3.6379 6.4377 17 6 3.6157 -3.6138 1.4966 18 8 3.2979 -4.7837 1.5781 19 6 3.9627 -3.0116 0.1767 20 8 4.2568 -3.7177 -0.7666 21 7 3.9443 -1.6681 0.0495 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1369 31 1 3.6782 -0.8767 3.3336 32 1 5.1684 -1.3816 2.5086 33 1 5.1859 -1.5354 5.7278 34 1 4.1830 -1.2575 -0.7963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = -97.351276 kcal Electronic energy + Delta-G solvation = -18162.273599 eV Core-core repulsion = 15286.997778 eV Total energy + Delta-G solvation = -2875.275821 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.91244 -39.10427 -38.73273 -36.73113 -35.34353 -33.47305 -31.06242 -28.25394 -27.89245 -27.18703 -24.78061 -23.47728 -21.06483 -19.88724 -19.07603 -18.84263 -17.95173 -17.04119 -16.94581 -15.93952 -15.79992 -15.53443 -15.36538 -15.02864 -14.72915 -14.08843 -13.75081 -13.53926 -13.22677 -13.10688 -12.99542 -12.73012 -12.52159 -12.42946 -12.10604 -12.08786 -11.69163 -11.49323 -11.41444 -11.08674 -10.35904 -10.26548 -9.84226 -8.53312 -6.11257 0.58791 1.43093 1.44236 1.56417 2.02322 2.19592 2.34842 2.73077 2.99239 3.62328 3.65843 3.94297 4.04315 4.22839 4.33866 4.51727 4.79849 4.82410 4.84250 4.93351 5.09763 5.13231 5.14688 5.18897 5.32094 5.36272 5.51587 5.57243 5.60827 5.88487 5.95069 6.33860 6.85599 7.01583 7.17318 7.77593 8.48979 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.009428 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.972807 B = 2969.034548 C = 3634.585893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.124 4.124 5 C 0.123 3.877 6 H 0.153 0.847 7 C 0.118 3.882 8 N -0.400 5.400 9 C -0.352 4.352 10 H 0.076 0.924 11 C 0.017 3.983 12 N -0.867 5.867 13 Si 0.992 3.008 14 H -0.278 1.278 15 H -0.256 1.256 16 H -0.269 1.269 17 C 0.388 3.612 18 O -0.616 6.616 19 C 0.524 3.476 20 O -0.564 6.564 21 N -0.688 5.688 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.287 0.713 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 14.491 -2.941 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.162 4.162 5 C 0.018 3.982 6 H 0.170 0.830 7 C -0.004 4.004 8 N -0.118 5.118 9 C -0.481 4.481 10 H 0.094 0.906 11 C -0.190 4.190 12 N -0.503 5.503 13 Si 0.814 3.186 14 H -0.204 1.204 15 H -0.179 1.179 16 H -0.194 1.194 17 C 0.175 3.825 18 O -0.503 6.503 19 C 0.308 3.692 20 O -0.441 6.441 21 N -0.345 5.345 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.014 13.647 -3.088 14.556 hybrid contribution -0.045 -0.671 0.467 0.818 sum -4.059 12.976 -2.621 13.847 Atomic orbital electron populations 1.21814 0.95082 1.00915 1.02502 1.21085 0.96061 0.97345 0.96736 1.21881 1.01658 0.93997 1.02585 1.22082 0.93872 1.00162 1.00104 1.21959 0.96302 0.95868 0.84039 0.82993 1.21892 0.99990 0.81244 0.97310 1.43827 1.52758 1.09382 1.05880 1.19738 1.28816 1.16773 0.82757 0.90622 1.26215 0.94526 0.95618 1.02656 1.69804 1.20596 1.27897 1.31984 0.84946 0.78681 0.78634 0.76292 1.20374 1.17947 1.19366 1.20261 0.89417 0.86723 0.86137 1.90555 1.55792 1.18016 1.85968 1.20465 0.76916 0.83567 0.88300 1.90665 1.49883 1.62661 1.40907 1.46026 1.67818 1.04190 1.16432 0.92000 0.91389 0.94670 0.91998 0.91453 0.91770 0.91890 0.95170 0.89333 0.87402 0.91873 0.90251 0.74545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.19 71.98 0.66 -2.37 16 2 C -0.09 -2.00 2.86 -10.80 -0.03 -2.03 16 3 C -0.14 -2.18 8.95 71.98 0.64 -1.54 16 4 C -0.12 -3.44 4.13 30.60 0.13 -3.31 16 5 C 0.12 3.49 3.02 44.91 0.14 3.62 16 6 H 0.15 2.89 6.35 -2.39 -0.02 2.87 16 7 C 0.12 4.62 4.21 86.30 0.36 4.98 16 8 N -0.40 -20.19 2.67 -638.28 -1.70 -21.89 16 9 C -0.35 -19.09 9.23 84.35 0.78 -18.31 16 10 H 0.08 4.47 7.48 -2.91 -0.02 4.44 16 11 C 0.02 0.80 4.98 85.14 0.42 1.22 16 12 N -0.87 -40.65 10.90 21.76 0.24 -40.41 16 13 Si 0.99 38.41 29.58 68.60 2.03 40.44 16 14 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 15 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 17 C 0.39 21.34 6.99 87.16 0.61 21.95 16 18 O -0.62 -39.82 16.80 10.45 0.18 -39.65 16 19 C 0.52 24.42 7.82 87.16 0.68 25.10 16 20 O -0.56 -29.54 17.87 10.64 0.19 -29.35 16 21 N -0.69 -22.28 4.59 -444.75 -2.04 -24.32 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.42 7.58 -2.38 -0.02 1.40 16 26 H 0.07 0.87 6.47 -2.39 -0.02 0.86 16 27 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.03 1.09 7.52 -2.39 -0.02 1.07 16 30 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 31 H 0.11 4.20 6.62 -2.39 -0.02 4.19 16 32 H 0.06 2.59 7.90 -2.39 -0.02 2.57 16 33 H 0.29 12.28 8.30 -92.71 -0.77 11.51 16 34 H 0.42 10.52 8.94 -92.71 -0.83 9.70 16 Total: -1.00 -72.04 281.11 3.57 -68.47 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.28 Total: 17.40 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 4.39 Total: 29.32 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -3.51 Total: -86.63 kcal Atomic # 8 Polarization: -69.36 SS G_CDS: 0.37 Total: -69.00 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -72.04 3.57 -68.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.878 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds