Wall clock time and date at job start Mon Mar 30 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47408 * 2 1 4 4 C 1.44047 * 116.14570 * 269.97616 * 3 2 1 5 5 C 1.50639 * 114.00005 * 216.61006 * 4 3 2 6 6 C 1.50646 * 113.47362 * 284.16730 * 5 4 3 7 7 N 1.44020 * 114.09436 * 75.59949 * 6 5 4 8 8 C 1.46493 * 116.11041 * 143.59695 * 7 6 5 9 9 C 1.50702 * 109.47064 * 270.26855 * 8 7 6 10 10 H 1.08002 * 119.99698 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00475 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99966 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46811 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47430 * 120.00022 * 13 11 9 16 16 H 1.48502 * 109.46855 * 239.99970 * 13 11 9 17 17 C 1.31703 * 127.75039 * 323.89799 * 7 6 5 18 18 O 1.21353 * 115.17759 * 184.36955 * 17 7 6 19 19 C 1.31712 * 116.14076 * 90.00287 * 3 2 1 20 20 O 1.21348 * 115.19749 * 355.52752 * 19 3 2 21 21 H 1.08999 * 109.47566 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47271 * 300.00214 * 1 2 3 23 23 H 1.09005 * 109.47075 * 59.99573 * 1 2 3 24 24 H 1.08998 * 109.46845 * 239.99984 * 2 1 3 25 25 H 1.09000 * 109.46658 * 120.00246 * 2 1 3 26 26 H 1.08995 * 108.57851 * 337.78701 * 4 3 2 27 27 H 1.09007 * 108.57482 * 95.59150 * 4 3 2 28 28 H 1.09002 * 108.68242 * 45.20081 * 5 4 3 29 29 H 1.09008 * 108.68098 * 163.27171 * 5 4 3 30 30 H 1.08999 * 108.58020 * 196.94569 * 6 5 4 31 31 H 1.09003 * 108.57892 * 314.76422 * 6 5 4 32 32 H 1.09000 * 109.46923 * 30.26383 * 8 7 6 33 33 H 1.09000 * 109.47633 * 150.26527 * 8 7 6 34 34 H 0.96995 * 120.00083 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2305 1.9794 -1.2931 5 6 3.4249 2.8952 -1.3560 6 6 3.1906 4.2326 -0.7034 7 7 3.2115 4.1961 0.7362 8 6 3.8019 5.3597 1.4022 9 6 5.2801 5.1346 1.5901 10 1 5.7342 4.2163 1.2481 11 6 6.0525 6.1003 2.1996 12 7 5.4994 7.2184 2.6166 13 14 7.8847 5.8209 2.4333 14 1 8.2571 4.4933 1.8821 15 1 8.6419 6.8825 1.7228 16 1 8.2113 5.8646 3.8813 17 6 2.7682 3.2391 1.5251 18 8 2.8247 3.4814 2.7128 19 6 2.2119 1.9282 1.1824 20 8 1.8795 1.2448 2.1285 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.3638 1.1839 -2.0261 27 1 1.3422 2.5517 -1.5608 28 1 4.2651 2.4078 -0.8614 29 1 3.6839 3.0598 -2.4019 30 1 3.9590 4.9256 -1.0459 31 1 2.2182 4.6087 -1.0215 32 1 3.6446 6.2474 0.7896 33 1 3.3293 5.5007 2.3742 34 1 6.0429 7.8980 3.0451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:55 Heat of formation + Delta-G solvation = -44.191013 kcal Electronic energy + Delta-G solvation = -17967.203138 eV Core-core repulsion = 15094.232519 eV Total energy + Delta-G solvation = -2872.970619 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03220 -38.64700 -37.16631 -34.56932 -33.15011 -32.01288 -30.31891 -27.86577 -26.06211 -25.22695 -22.94744 -22.32562 -20.95185 -18.42667 -17.58819 -16.73023 -16.48951 -15.60645 -15.14202 -14.69511 -14.48286 -14.20651 -14.10914 -13.60734 -13.31387 -12.66718 -12.48914 -12.30600 -12.06985 -11.73277 -11.41559 -11.31165 -11.07419 -10.99292 -10.83324 -10.70152 -10.19887 -10.14555 -9.62826 -8.87260 -8.78523 -8.43856 -7.84951 -6.07467 -4.12121 2.10597 2.89002 3.28546 3.36876 3.40090 3.77158 4.02425 4.42045 4.60935 4.76617 4.90421 5.01853 5.19796 5.24272 5.27846 5.34846 5.47921 5.54055 5.65915 5.72798 5.93178 6.07828 6.13557 6.19421 6.40135 6.87711 7.31284 7.41597 7.51562 7.87806 8.00962 8.17443 8.41497 8.84091 8.94932 9.52391 11.01292 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037032 B = 0.006794 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.916963 B = 4120.423586 C = 4319.956558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.588 5.588 4 C 0.111 3.889 5 C -0.156 4.156 6 C 0.111 3.889 7 N -0.568 5.568 8 C 0.229 3.771 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.497 3.503 18 O -0.501 6.501 19 C 0.512 3.488 20 O -0.515 6.515 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 -10.152 -13.240 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.323 5.323 4 C -0.013 4.013 5 C -0.194 4.194 6 C -0.013 4.013 7 N -0.301 5.301 8 C 0.110 3.890 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.278 3.722 18 O -0.375 6.375 19 C 0.295 3.705 20 O -0.389 6.389 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.979 -10.180 -11.989 17.207 hybrid contribution 1.105 -0.051 -0.107 1.111 sum -5.874 -10.231 -12.096 16.897 Atomic orbital electron populations 1.22060 0.95629 1.02091 1.02435 1.21626 0.94936 0.82531 1.03402 1.46852 1.64463 1.15230 1.05800 1.20732 0.98719 0.97798 0.84026 1.21363 0.98684 0.96380 1.03020 1.20582 1.02412 0.97248 0.81064 1.46970 1.56602 1.20518 1.06037 1.19598 0.93449 0.81033 0.94904 1.21363 0.92537 1.03163 1.39465 0.92461 1.24917 0.98964 0.95007 0.95065 1.69940 1.35965 1.07298 1.39881 0.86430 0.84784 0.78049 0.78086 1.19836 1.20915 1.20797 1.18175 0.81888 0.84416 0.87761 1.90811 1.53648 1.76492 1.16567 1.19225 0.79857 0.88429 0.82989 1.90723 1.48005 1.57329 1.42838 0.91701 0.91904 0.92739 0.90554 0.89236 0.89739 0.91807 0.90449 0.88463 0.88658 0.92749 0.94534 0.92512 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.18 37.16 0.38 -1.31 16 2 C 0.10 1.12 5.66 -4.05 -0.02 1.10 16 3 N -0.59 -8.26 2.70 -179.65 -0.48 -8.74 16 4 C 0.11 1.12 6.00 -6.53 -0.04 1.08 16 5 C -0.16 -1.77 5.38 -29.09 -0.16 -1.93 16 6 C 0.11 1.67 5.89 -6.54 -0.04 1.64 16 7 N -0.57 -12.05 2.69 -181.04 -0.49 -12.54 16 8 C 0.23 5.94 4.61 -5.20 -0.02 5.91 16 9 C -0.53 -14.77 9.35 -34.44 -0.32 -15.09 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 13 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 C 0.50 11.43 7.40 -14.29 -0.11 11.33 16 18 O -0.50 -14.10 14.90 -16.48 -0.25 -14.34 16 19 C 0.51 10.04 7.41 -14.29 -0.11 9.93 16 20 O -0.51 -11.58 14.76 -16.47 -0.24 -11.83 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.62 7.53 -51.93 -0.39 0.23 16 25 H 0.09 1.21 6.96 -51.93 -0.36 0.85 16 26 H 0.08 0.59 7.42 -51.93 -0.39 0.21 16 27 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.10 1.46 7.76 -51.93 -0.40 1.06 16 31 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 32 H 0.04 0.93 7.90 -51.93 -0.41 0.52 16 33 H 0.06 1.69 6.79 -51.93 -0.35 1.33 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -35.39 283.43 -6.79 -42.18 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.78 Total: -4.46 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -0.53 Total: 14.34 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.23 Total: -46.91 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.49 Total: -26.17 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.39 -6.79 -42.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.011 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds