Wall clock time and date at job start Mon Mar 30 2020 04:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47060 * 2 1 4 4 C 1.34525 * 126.69036 * 90.02391 * 3 2 1 5 5 O 1.21543 * 123.77085 * 359.97083 * 4 3 2 6 6 N 1.33791 * 112.45685 * 179.70446 * 4 3 2 7 7 C 1.46500 * 124.17509 * 180.23558 * 6 4 3 8 8 H 1.08997 * 109.47053 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47602 * 60.01923 * 7 6 4 10 10 C 1.50704 * 109.47046 * 300.01800 * 7 6 4 11 11 H 1.08000 * 119.99580 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99839 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00658 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99705 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47365 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46939 * 120.00200 * 14 12 10 17 17 H 1.48500 * 109.47271 * 240.00104 * 14 12 10 18 18 C 1.34766 * 111.64749 * 0.26475 * 6 4 3 19 19 O 1.21226 * 127.15862 * 180.02562 * 18 6 4 20 20 C 1.47309 * 126.69129 * 270.16353 * 3 2 1 21 21 H 1.08998 * 110.80263 * 61.64125 * 20 3 2 22 22 C 1.53007 * 110.53026 * 298.75795 * 20 3 2 23 23 H 1.09000 * 109.47130 * 300.00422 * 1 2 3 24 24 H 1.09008 * 109.47020 * 59.99715 * 1 2 3 25 25 H 1.08999 * 109.46877 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46920 * 240.00489 * 2 1 3 27 27 H 1.08999 * 109.47429 * 119.99864 * 2 1 3 28 28 H 1.09002 * 109.46383 * 60.00036 * 9 7 6 29 29 H 1.09001 * 109.47410 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47040 * 300.00159 * 9 7 6 31 31 H 0.96990 * 120.00385 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47281 * 304.41510 * 22 20 3 33 33 H 1.09001 * 109.47189 * 64.41347 * 22 20 3 34 34 H 1.09002 * 109.46739 * 184.41341 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2867 2.1389 1.0787 5 8 2.1512 1.7557 2.2242 6 7 2.7248 3.3595 0.7498 7 6 3.0966 4.3902 1.7223 8 1 3.4181 5.2883 1.1949 9 6 4.2407 3.8760 2.5983 10 6 1.9073 4.7154 2.5890 11 1 0.9687 4.2049 2.4314 12 6 2.0177 5.6644 3.5830 13 7 3.1605 6.2863 3.7746 14 14 0.5438 6.0669 4.6577 15 1 -0.6138 5.2345 4.2424 16 1 0.8738 5.7820 6.0773 17 1 0.1998 7.5037 4.5083 18 6 2.7814 3.5240 -0.5866 19 8 3.1368 4.5147 -1.1881 20 6 2.3086 2.2122 -1.1812 21 1 1.4093 2.3639 -1.7782 22 6 3.4132 1.5754 -2.0270 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.1008 3.6409 1.9714 29 1 4.5176 4.6431 3.3216 30 1 3.9192 2.9780 3.1257 31 1 3.2380 6.9542 4.4736 32 1 4.2948 1.4093 -1.4078 33 1 3.0633 0.6225 -2.4239 34 1 3.6685 2.2408 -2.8517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:27 Heat of formation + Delta-G solvation = -65.840045 kcal Electronic energy + Delta-G solvation = -18217.742244 eV Core-core repulsion = 15343.832852 eV Total energy + Delta-G solvation = -2873.909391 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.24430 -39.52701 -37.73613 -36.88673 -35.07991 -33.21983 -31.65572 -30.08038 -27.43213 -25.88755 -25.04752 -23.26764 -22.28392 -20.85940 -18.71281 -18.30098 -17.82966 -17.08976 -16.72456 -16.43358 -15.86971 -15.29777 -15.17597 -14.88560 -14.62934 -14.23585 -13.69163 -13.55277 -13.42106 -13.24688 -13.00911 -12.86018 -12.81347 -12.65331 -12.45303 -12.29399 -11.94488 -11.65468 -11.31382 -10.93344 -10.61566 -10.41316 -9.86486 -8.25593 -6.39266 0.73533 1.32846 1.36057 1.37306 1.49677 2.16886 2.22581 2.38873 3.03264 3.13004 3.76965 3.98961 4.13750 4.38019 4.47116 4.54023 4.62649 4.66934 4.75444 4.80540 4.84176 4.90460 4.96767 5.20099 5.21975 5.35454 5.38984 5.58952 5.66702 5.76535 5.98261 6.48702 6.51470 6.64718 7.21890 7.36811 8.80679 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.008772 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.023165 B = 3191.214823 C = 3697.783913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.142 3.858 3 N -0.620 5.620 4 C 0.690 3.310 5 O -0.572 6.572 6 N -0.572 5.572 7 C 0.272 3.728 8 H 0.033 0.967 9 C -0.135 4.135 10 C -0.533 4.533 11 H 0.044 0.956 12 C 0.019 3.981 13 N -0.912 5.912 14 Si 0.967 3.033 15 H -0.276 1.276 16 H -0.274 1.274 17 H -0.270 1.270 18 C 0.505 3.495 19 O -0.517 6.517 20 C 0.102 3.898 21 H 0.151 0.849 22 C -0.138 4.138 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.269 0.731 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -13.259 -11.916 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 N -0.361 5.361 4 C 0.393 3.607 5 O -0.448 6.448 6 N -0.315 5.315 7 C 0.172 3.828 8 H 0.051 0.949 9 C -0.194 4.194 10 C -0.571 4.571 11 H 0.062 0.938 12 C -0.181 4.181 13 N -0.551 5.551 14 Si 0.791 3.209 15 H -0.201 1.201 16 H -0.199 1.199 17 H -0.195 1.195 18 C 0.294 3.706 19 O -0.391 6.391 20 C -0.004 4.004 21 H 0.168 0.832 22 C -0.196 4.196 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.583 -12.881 -11.441 17.421 hybrid contribution -0.534 0.814 1.079 1.453 sum -3.117 -12.067 -10.363 16.208 Atomic orbital electron populations 1.22194 0.95283 1.03638 1.01525 1.21586 0.94514 0.76592 1.04979 1.48090 1.68996 1.14919 1.04049 1.16188 0.78034 0.80759 0.85722 1.90870 1.58210 1.75060 1.20669 1.47017 1.59318 1.15288 1.09841 1.18772 0.94630 0.83856 0.85520 0.94874 1.21892 0.95946 1.01212 1.00321 1.21290 0.96379 1.22059 1.17407 0.93787 1.25643 0.99238 0.95217 0.97960 1.69957 1.25559 1.26208 1.33373 0.85378 0.78916 0.78074 0.78486 1.20074 1.19910 1.19516 1.21758 0.76011 0.90500 0.82327 1.90692 1.47040 1.34492 1.66901 1.22251 1.03202 0.86089 0.88895 0.83166 1.21938 0.95495 1.03186 0.98938 0.95655 0.91255 0.88475 0.85237 0.90771 0.95393 0.90190 0.94353 0.92136 0.92954 0.86690 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.24 71.98 0.74 -2.39 16 2 C 0.14 2.82 6.73 86.38 0.58 3.40 16 3 N -0.62 -18.21 2.74 -817.76 -2.24 -20.45 16 4 C 0.69 29.82 7.63 179.44 1.37 31.19 16 5 O -0.57 -29.21 15.41 -3.85 -0.06 -29.27 16 6 N -0.57 -26.74 2.50 -754.46 -1.89 -28.62 16 7 C 0.27 15.08 2.75 44.25 0.12 15.20 16 8 H 0.03 2.01 7.64 -2.39 -0.02 1.99 16 9 C -0.14 -7.20 8.97 71.98 0.65 -6.55 16 10 C -0.53 -31.67 7.99 25.60 0.20 -31.47 16 11 H 0.04 2.70 7.68 -2.91 -0.02 2.68 16 12 C 0.02 1.12 5.30 84.65 0.45 1.57 16 13 N -0.91 -53.63 11.32 21.45 0.24 -53.39 16 14 Si 0.97 45.99 29.54 68.60 2.03 48.01 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 C 0.50 20.02 7.66 87.94 0.67 20.69 16 19 O -0.52 -23.16 17.51 -2.86 -0.05 -23.21 16 20 C 0.10 2.60 4.05 44.38 0.18 2.78 16 21 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 22 C -0.14 -2.37 9.38 71.98 0.68 -1.69 16 23 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.13 1.33 7.46 -2.39 -0.02 1.31 16 27 H 0.07 1.68 8.03 -2.39 -0.02 1.66 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 4.54 6.07 -2.39 -0.01 4.52 16 30 H 0.04 2.08 6.70 -2.39 -0.02 2.07 16 31 H 0.27 14.80 8.31 -92.72 -0.77 14.03 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.05 7.58 -2.39 -0.02 1.03 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.90 287.52 4.76 -71.14 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.09 Total: 3.05 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 5.64 Total: 32.73 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -3.88 Total: -102.45 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.11 Total: -52.48 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.90 4.76 -71.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.299 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds