Wall clock time and date at job start Mon Mar 30 2020 04:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47172 * 2 1 4 4 C 1.50702 * 109.46837 * 239.99511 * 2 1 3 5 5 H 1.08004 * 120.00044 * 239.99604 * 4 2 1 6 6 C 1.37873 * 119.99651 * 60.00542 * 4 2 1 7 7 N 1.31516 * 120.00637 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99479 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46936 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.46999 * 299.99397 * 8 6 4 11 11 H 1.48496 * 109.47315 * 59.99863 * 8 6 4 12 12 N 1.46503 * 109.46968 * 119.99890 * 2 1 3 13 13 C 1.44707 * 114.08783 * 65.22672 * 12 2 1 14 14 C 1.51882 * 112.91750 * 192.90408 * 13 12 2 15 15 H 1.09002 * 109.10316 * 174.14143 * 14 13 12 16 16 C 1.53001 * 109.10457 * 55.04308 * 14 13 12 17 17 N 1.45564 * 111.33675 * 294.55946 * 14 13 12 18 18 C 1.32531 * 122.51983 * 71.25323 * 17 14 13 19 19 O 1.21274 * 120.29296 * 184.57942 * 18 17 14 20 20 C 1.50701 * 119.41542 * 4.55222 * 18 17 14 21 21 C 1.31332 * 114.08058 * 244.98376 * 12 2 1 22 22 O 1.21279 * 116.49266 * 357.23984 * 21 12 2 23 23 H 1.08999 * 109.47062 * 53.48191 * 1 2 3 24 24 H 1.09000 * 109.46879 * 173.48302 * 1 2 3 25 25 H 1.09003 * 109.46666 * 293.48320 * 1 2 3 26 26 H 0.96996 * 120.00178 * 180.02562 * 7 6 4 27 27 H 1.09004 * 108.79487 * 313.79129 * 13 12 2 28 28 H 1.09002 * 108.79996 * 72.01861 * 13 12 2 29 29 H 1.09002 * 109.47119 * 85.76170 * 16 14 13 30 30 H 1.08999 * 109.47053 * 205.76111 * 16 14 13 31 31 H 1.09002 * 109.47198 * 325.75951 * 16 14 13 32 32 H 0.96998 * 118.74504 * 251.27140 * 17 14 13 33 33 H 1.08999 * 109.17241 * 56.13167 * 20 18 17 34 34 H 1.08997 * 109.17328 * 175.35611 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8269 -0.4202 -5.2204 10 1 3.8075 -1.1192 -4.0076 11 1 1.8280 -2.5200 -4.0080 12 7 2.0184 -0.6906 1.1962 13 6 1.6933 -2.1001 1.2385 14 6 1.9278 -2.7203 2.6049 15 1 1.5675 -3.7490 2.5963 16 6 1.1493 -1.9261 3.6557 17 7 3.3411 -2.7146 2.9537 18 6 3.9943 -1.6035 3.2623 19 8 5.1894 -1.6330 3.4659 20 6 3.2388 -0.3030 3.3574 21 6 2.6750 0.0823 2.0307 22 8 2.8366 1.2343 1.6879 23 1 -0.3633 0.6115 -0.8259 24 1 -0.3633 -1.0210 -0.1166 25 1 -0.3633 0.4095 0.9426 26 1 0.7083 1.1607 -3.4844 27 1 0.6443 -2.2267 0.9707 28 1 2.3063 -2.6241 0.5052 29 1 0.1279 -2.3026 3.7125 30 1 1.6321 -2.0375 4.6266 31 1 1.1333 -0.8726 3.3766 32 1 3.8233 -3.5562 2.9603 33 1 2.4273 -0.4122 4.0768 34 1 3.9159 0.4801 3.6987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:43 Heat of formation + Delta-G solvation = -41.360876 kcal Electronic energy + Delta-G solvation = -18462.288053 eV Core-core repulsion = 15589.440158 eV Total energy + Delta-G solvation = -2872.847895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07494 -38.77134 -36.77288 -35.02829 -32.66414 -30.93964 -30.47529 -28.80865 -26.46220 -25.26215 -23.06341 -21.29861 -20.13953 -18.64172 -17.64448 -16.69831 -16.07629 -15.69961 -15.62078 -14.68748 -14.63497 -14.04301 -13.87552 -13.58922 -12.84764 -12.64887 -12.61976 -12.29643 -11.84025 -11.51657 -11.40429 -11.10801 -10.85375 -10.76235 -10.67646 -10.31427 -10.12325 -9.97985 -9.35024 -9.14132 -8.80157 -8.32642 -7.75096 -6.09524 -4.16842 2.58381 3.17764 3.25956 3.31874 3.33835 3.49509 3.80971 4.37130 4.58440 4.69820 4.83807 4.97590 5.18027 5.23384 5.30770 5.55179 5.64100 5.81861 5.94224 5.99058 6.20372 6.69015 6.75028 6.78831 7.01765 7.20490 7.27186 7.60292 7.72132 7.95473 8.16279 8.24508 8.54709 8.81531 8.95019 9.48647 10.96628 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029304 B = 0.008269 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.264945 B = 3385.343047 C = 3497.493848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.229 3.771 3 H 0.083 0.917 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.572 5.572 13 C 0.109 3.891 14 C 0.121 3.879 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.714 5.714 18 C 0.533 3.467 19 O -0.546 6.546 20 C -0.178 4.178 21 C 0.513 3.487 22 O -0.555 6.555 23 H 0.090 0.910 24 H 0.030 0.970 25 H 0.011 0.989 26 H 0.264 0.736 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.399 0.601 33 H 0.130 0.870 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 -8.693 10.636 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.128 3.872 3 H 0.100 0.900 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.301 5.301 13 C -0.016 4.016 14 C 0.016 3.984 15 H 0.127 0.873 16 C -0.242 4.242 17 N -0.366 5.366 18 C 0.319 3.681 19 O -0.424 6.424 20 C -0.220 4.220 21 C 0.299 3.701 22 O -0.436 6.436 23 H 0.108 0.892 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.234 0.766 33 H 0.147 0.853 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.372 -7.819 10.469 13.280 hybrid contribution 0.379 -0.999 -0.938 1.422 sum -1.994 -8.818 9.531 13.136 Atomic orbital electron populations 1.22055 0.98068 1.00124 0.99731 1.19327 0.91066 0.96573 0.80224 0.89980 1.21210 1.32162 1.13025 0.90333 0.92416 1.24865 0.94894 0.94917 0.98903 1.69882 1.36118 1.22429 1.23852 0.86577 0.79308 0.79514 0.82105 1.21151 1.20269 1.20264 1.46704 1.51918 1.08764 1.22729 1.21295 1.02941 0.82141 0.95211 1.21162 0.80416 1.01785 0.95062 0.87302 1.22723 1.00895 1.02242 0.98387 1.45448 1.11529 1.10086 1.69526 1.19696 0.87214 0.85659 0.75497 1.90751 1.14524 1.86406 1.50710 1.22416 1.03317 0.97367 0.98901 1.18343 0.79782 0.86645 0.85378 1.90724 1.59231 1.19040 1.74571 0.89168 0.95047 0.97029 0.92635 0.89006 0.90580 0.90776 0.91562 0.90548 0.76550 0.85283 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.66 37.16 0.32 -2.87 16 2 C 0.23 5.64 2.31 -69.08 -0.16 5.48 16 3 H 0.08 2.41 6.10 -51.93 -0.32 2.09 16 4 C -0.53 -13.93 8.11 -34.44 -0.28 -14.21 16 5 H 0.06 1.49 6.51 -52.48 -0.34 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.73 11.39 55.43 0.63 -24.10 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.57 -11.46 2.41 -171.09 -0.41 -11.88 16 13 C 0.11 1.67 4.82 -5.57 -0.03 1.65 16 14 C 0.12 1.31 3.68 -69.00 -0.25 1.05 16 15 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.18 -1.82 7.60 37.16 0.28 -1.54 16 17 N -0.71 -8.86 5.00 -55.50 -0.28 -9.13 16 18 C 0.53 8.61 7.13 -11.98 -0.09 8.53 16 19 O -0.55 -10.76 17.91 5.56 0.10 -10.66 16 20 C -0.18 -2.82 5.13 -29.74 -0.15 -2.98 16 21 C 0.51 10.55 6.01 -13.20 -0.08 10.47 16 22 O -0.56 -14.00 15.18 5.56 0.08 -13.92 16 23 H 0.09 2.28 6.27 -51.93 -0.33 1.96 16 24 H 0.03 0.64 6.78 -51.93 -0.35 0.29 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.09 1.35 6.28 -51.93 -0.33 1.03 16 28 H 0.08 1.27 6.82 -51.93 -0.35 0.92 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.57 7.44 -51.93 -0.39 0.19 16 31 H 0.08 0.94 4.39 -51.93 -0.23 0.71 16 32 H 0.40 4.19 8.87 -40.82 -0.36 3.83 16 33 H 0.13 1.59 4.59 -51.93 -0.24 1.36 16 34 H 0.12 1.97 8.03 -51.93 -0.42 1.55 16 LS Contribution 266.34 15.07 4.01 4.01 Total: -1.00 -33.17 266.34 -5.46 -38.63 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.05 Total: 3.93 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.53 Total: 7.28 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.06 Total: -45.11 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.18 Total: -24.58 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.17 -5.46 -38.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.732 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds